RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 NSD2O96028 1365 aa14.95□□□□□ -0.02
TCOF1-205ENST00000439160 TEX14Q8IWB6 1497 aa14.95□□□□□ -0.02
TCOF1-205ENST00000439160 HSP90AB2PQ58FF8 381 aa14.95□□□□□ -0.02
TCOF1-205ENST00000439160 ABCC11Q96J66 1382 aa14.95□□□□□ -0.02
TCOF1-205ENST00000439160 SRGAP3O43295 1099 aa14.94□□□□□ -0.02
TCOF1-205ENST00000439160 WASHC4Q2M389 1173 aa14.94□□□□□ -0.02
TCOF1-205ENST00000439160 ZRANB1Q9UGI0 708 aa14.94□□□□□ -0.02
TCOF1-205ENST00000439160 CNTROBQ8N137 903 aa14.94□□□□□ -0.02
TCOF1-205ENST00000439160 MPRIPQ6WCQ1 1025 aa14.94□□□□□ -0.02
TCOF1-205ENST00000439160 LRRCC1Q9C099 1032 aa14.94□□□□□ -0.02
TCOF1-205ENST00000439160 IL1RAPL2Q9NP60 686 aa14.94□□□□□ -0.02
TCOF1-205ENST00000439160 ATP6V1DQ9Y5K8 247 aa14.94□□□□□ -0.02
TCOF1-205ENST00000439160 ANKRD36BQ8N2N9 1353 aa14.93□□□□□ -0.02
TCOF1-205ENST00000439160 PARD3Q8TEW0 1356 aa14.93□□□□□ -0.02
TCOF1-205ENST00000439160 RIMS2Q9UQ26 1411 aa14.93□□□□□ -0.02
TCOF1-205ENST00000439160 PER1O15534 1290 aaPredicted RBP14.93□□□□□ -0.02
TCOF1-205ENST00000439160 F6X3S4 739 aa14.93□□□□□ -0.02
TCOF1-205ENST00000439160 DNAJC2Q99543 621 aaKnown RBP14.93□□□□□ -0.02
TCOF1-205ENST00000439160 EXOC6BQ9Y2D4 811 aa14.93□□□□□ -0.02
TCOF1-205ENST00000439160 ADGRL2O95490 1459 aa14.93□□□□□ -0.02
TCOF1-205ENST00000439160 VPS37CA5D8V6 355 aaPredicted RBP14.92□□□□□ -0.02
TCOF1-205ENST00000439160 PTCD1O75127 700 aaKnown RBP14.92□□□□□ -0.02
TCOF1-205ENST00000439160 TRIM27P14373 513 aa14.92□□□□□ -0.02
TCOF1-205ENST00000439160 NEK4P51957 841 aa14.92□□□□□ -0.02
TCOF1-205ENST00000439160 PIP4K2BP78356 416 aa14.92□□□□□ -0.02
TCOF1-205ENST00000439160 TAF7Q15545 349 aaPredicted RBP14.92□□□□□ -0.02
TCOF1-205ENST00000439160 NFKBIBQ15653 356 aa14.92□□□□□ -0.02
TCOF1-205ENST00000439160 TRDNQ13061 729 aa14.91□□□□□ -0.02
TCOF1-205ENST00000439160 KIF6Q6ZMV9 814 aa14.91□□□□□ -0.02
TCOF1-205ENST00000439160 NCKAP5LQ9HCH0 1330 aa14.91□□□□□ -0.02
TCOF1-205ENST00000439160 CPLX1O14810 134 aa14.91□□□□□ -0.02
TCOF1-205ENST00000439160 ALDH1L2Q3SY69 923 aa14.91□□□□□ -0.02
TCOF1-205ENST00000439160 RASSF8Q8NHQ8 419 aa14.91□□□□□ -0.02
TCOF1-205ENST00000439160 RPAP2Q8IXW5 612 aaPredicted RBP14.91□□□□□ -0.02
TCOF1-205ENST00000439160 SMC3Q9UQE7 1217 aa14.91□□□□□ -0.02
TCOF1-205ENST00000439160 TTC21BQ7Z4L5 1316 aa14.91□□□□□ -0.02
TCOF1-205ENST00000439160 MAP4K4O95819 1239 aaPredicted RBP14.9□□□□□ -0.02
TCOF1-205ENST00000439160 CPLX2Q6PUV4 134 aaKnown RBP14.9□□□□□ -0.02
TCOF1-205ENST00000439160 KRT28Q7Z3Y7 464 aa14.9□□□□□ -0.02
TCOF1-205ENST00000439160 ASXL1Q8IXJ9 1541 aa14.9□□□□□ -0.02
TCOF1-205ENST00000439160 LRPPRCP42704 1394 aaKnown RBP14.9□□□□□ -0.02
TCOF1-205ENST00000439160 KIAA2012Q0VF49 1180 aa14.9□□□□□ -0.02
TCOF1-205ENST00000439160 SYNE3Q6ZMZ3 975 aa14.9□□□□□ -0.02
TCOF1-205ENST00000439160 CHAF1AQ13111 956 aaPredicted RBP14.89□□□□□ -0.03
TCOF1-205ENST00000439160 ARHGEF12Q9NZN5 1544 aa14.89□□□□□ -0.03
TCOF1-205ENST00000439160 ZMYM3Q14202 1370 aa14.89□□□□□ -0.03
TCOF1-205ENST00000439160 SKOR2Q2VWA4 1001 aaPredicted RBP14.89□□□□□ -0.03
TCOF1-205ENST00000439160 MBIPQ9NS73 344 aa14.89□□□□□ -0.03
TCOF1-205ENST00000439160 POLKQ9UBT6 870 aa14.89□□□□□ -0.03
TCOF1-205ENST00000439160 PHF14O94880 888 aa14.88□□□□□ -0.03
TCOF1-205ENST00000439160 AKAP17AQ02040 695 aaKnown RBP14.88□□□□□ -0.03
TCOF1-205ENST00000439160 ERC1Q8IUD2 1116 aa14.88□□□□□ -0.03
TCOF1-205ENST00000439160 IL27Q8NEV9 243 aa14.88□□□□□ -0.03
TCOF1-205ENST00000439160 NUCB2P80303 420 aa14.88□□□□□ -0.03
TCOF1-205ENST00000439160 PPIP5K1Q6PFW1 1433 aa14.88□□□□□ -0.03
TCOF1-205ENST00000439160 FOSBP53539 338 aa14.88□□□□□ -0.03
TCOF1-205ENST00000439160 AEBP1Q8IUX7 1158 aa14.88□□□□□ -0.03
TCOF1-205ENST00000439160 CCDC34Q96HJ3 373 aa14.87□□□□□ -0.03
TCOF1-205ENST00000439160 AMOTQ4VCS5 1084 aa14.87□□□□□ -0.03
TCOF1-205ENST00000439160 CCDC85AQ96PX6 553 aaPredicted RBP14.87□□□□□ -0.03
TCOF1-205ENST00000439160 ATP7AQ04656 1500 aa14.87□□□□□ -0.03
TCOF1-205ENST00000439160 CHMP4CQ96CF2 233 aa14.86□□□□□ -0.03
TCOF1-205ENST00000439160 CHRNA2Q15822 529 aa14.86□□□□□ -0.03
TCOF1-205ENST00000439160 RALYLQ86SE5 291 aaKnown RBP14.86□□□□□ -0.03
TCOF1-205ENST00000439160 SMARCA5O60264 1052 aaPredicted RBP14.86□□□□□ -0.03
TCOF1-205ENST00000439160 NOL10Q9BSC4 688 aaKnown RBP14.86□□□□□ -0.03
TCOF1-205ENST00000439160 CCDC27Q2M243 656 aa14.85□□□□□ -0.03
TCOF1-205ENST00000439160 NFXL1Q6ZNB6 911 aa14.85□□□□□ -0.03
TCOF1-205ENST00000439160 AACSQ86V21 672 aa14.85□□□□□ -0.03
TCOF1-205ENST00000439160 FBXW7Q969H0 707 aa14.85□□□□□ -0.03
TCOF1-205ENST00000439160 CNNM1Q9NRU3 951 aa14.85□□□□□ -0.03
TCOF1-205ENST00000439160 CREBRFQ8IUR6 639 aa14.85□□□□□ -0.03
TCOF1-205ENST00000439160 RABEP1Q15276 862 aa14.84□□□□□ -0.03
TCOF1-205ENST00000439160 UHRF1BP1Q6BDS2 1440 aa14.84□□□□□ -0.03
TCOF1-205ENST00000439160 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.84□□□□□ -0.03
TCOF1-205ENST00000439160 RAD21O60216 631 aa14.84□□□□□ -0.03
TCOF1-205ENST00000439160 NUTM1Q86Y26 1132 aa14.84□□□□□ -0.03
TCOF1-205ENST00000439160 KCNA6P17658 529 aa14.84□□□□□ -0.03
TCOF1-205ENST00000439160 A0A1W2PP64 1363 aa14.84□□□□□ -0.03
TCOF1-205ENST00000439160 ARID3AQ99856 593 aa14.83□□□□□ -0.03
TCOF1-205ENST00000439160 CFAP65Q6ZU64 1925 aaKnown RBP14.83□□□□□ -0.04
TCOF1-205ENST00000439160 MBD5Q9P267 1494 aa14.83□□□□□ -0.04
TCOF1-205ENST00000439160 ADAMTS2O95450 1211 aa14.83□□□□□ -0.04
TCOF1-205ENST00000439160 FLIIQ13045 1269 aa14.83□□□□□ -0.04
TCOF1-205ENST00000439160 CLSTN1O94985 981 aa14.83□□□□□ -0.04
TCOF1-205ENST00000439160 BRPF3Q9ULD4 1205 aa14.83□□□□□ -0.04
TCOF1-205ENST00000439160 EIF4A2Q14240 407 aaKnown RBP14.83□□□□□ -0.04
TCOF1-205ENST00000439160 CADPS2Q86UW7 1296 aa14.83□□□□□ -0.04
TCOF1-205ENST00000439160 POLR3AO14802 1390 aaPredicted RBP14.82□□□□□ -0.04
TCOF1-205ENST00000439160 ANXA1P04083 346 aa14.82□□□□□ -0.04
TCOF1-205ENST00000439160 TPM4P67936 248 aa14.82□□□□□ -0.04
TCOF1-205ENST00000439160 TRIM29Q14134 588 aa14.82□□□□□ -0.04
TCOF1-205ENST00000439160 CCDC57Q2TAC2 916 aa14.82□□□□□ -0.04
TCOF1-205ENST00000439160 IGHDP01880 384 aa14.82□□□□□ -0.04
TCOF1-205ENST00000439160 BICD2Q8TD16 824 aa14.82□□□□□ -0.04
TCOF1-205ENST00000439160 ANKRD24Q8TF21 1146 aa14.82□□□□□ -0.04
TCOF1-205ENST00000439160 PUS7Q96PZ0 661 aaKnown RBP14.82□□□□□ -0.04
TCOF1-205ENST00000439160 YTHDC2Q9H6S0 1430 aaKnown RBP14.82□□□□□ -0.04
TCOF1-205ENST00000439160 AMOTL1Q8IY63 956 aa14.82□□□□□ -0.04
TCOF1-205ENST00000439160 EIF2AK4Q9P2K8 1649 aaKnown RBP14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms