RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 HDGFP51858 240 aaKnown RBP17.24■□□□□ 0.35
COL6A3-207ENST00000433762 NUCB1Q02818 461 aa17.24■□□□□ 0.35
COL6A3-207ENST00000433762 TOPAZ1Q8N9V7 1692 aa17.24■□□□□ 0.35
COL6A3-207ENST00000433762 IL13P35225 146 aa17.23■□□□□ 0.35
COL6A3-207ENST00000433762 TBC1D2Q9BYX2 928 aa17.23■□□□□ 0.35
COL6A3-207ENST00000433762 GCC1Q96CN9 775 aa17.23■□□□□ 0.35
COL6A3-207ENST00000433762 EIF5BO60841 1220 aaKnown RBP17.22■□□□□ 0.35
COL6A3-207ENST00000433762 C22orf23Q9BZE7 217 aa17.22■□□□□ 0.35
COL6A3-207ENST00000433762 ESF1Q9H501 851 aaKnown RBP17.22■□□□□ 0.35
COL6A3-207ENST00000433762 NALCNQ8IZF0 1738 aa17.21■□□□□ 0.35
COL6A3-207ENST00000433762 VAMP4O75379 141 aa17.21■□□□□ 0.35
COL6A3-207ENST00000433762 ZNF692Q9BU19 519 aaPredicted RBP17.21■□□□□ 0.35
COL6A3-207ENST00000433762 ABCC4O15439 1325 aa17.21■□□□□ 0.35
COL6A3-207ENST00000433762 MRPL50Q8N5N7 158 aaKnown RBP17.21■□□□□ 0.34
COL6A3-207ENST00000433762 RBM25P49756 843 aaKnown RBP17.2■□□□□ 0.34
COL6A3-207ENST00000433762 HAP1P54257 671 aaPredicted RBP17.2■□□□□ 0.34
COL6A3-207ENST00000433762 BMP2KLQ5H9B9 411 aa17.2■□□□□ 0.34
COL6A3-207ENST00000433762 UBR1Q8IWV7 1749 aa17.19■□□□□ 0.34
COL6A3-207ENST00000433762 CCDC61Q9Y6R9 512 aa17.19■□□□□ 0.34
COL6A3-207ENST00000433762 NCOA3Q9Y6Q9 1424 aa17.19■□□□□ 0.34
COL6A3-207ENST00000433762 WAPLQ7Z5K2 1190 aa17.18■□□□□ 0.34
COL6A3-207ENST00000433762 CFAP44Q96MT7 982 aa17.18■□□□□ 0.34
COL6A3-207ENST00000433762 ZBTB7BO15156 539 aaPredicted RBP17.18■□□□□ 0.34
COL6A3-207ENST00000433762 CHD1LQ86WJ1 897 aa17.18■□□□□ 0.34
COL6A3-207ENST00000433762 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.18■□□□□ 0.34
COL6A3-207ENST00000433762 METP08581 1390 aa17.17■□□□□ 0.34
COL6A3-207ENST00000433762 SNX21Q969T3 373 aa17.17■□□□□ 0.34
COL6A3-207ENST00000433762 COG3Q96JB2 828 aa17.17■□□□□ 0.34
COL6A3-207ENST00000433762 API5Q9BZZ5 524 aaKnown RBP17.17■□□□□ 0.34
COL6A3-207ENST00000433762 RGPD1P0DJD0 1748 aa17.17■□□□□ 0.34
COL6A3-207ENST00000433762 NUDT16Q96DE0 195 aaKnown RBP17.16■□□□□ 0.34
COL6A3-207ENST00000433762 CHMP5Q9NZZ3 219 aa17.16■□□□□ 0.34
COL6A3-207ENST00000433762 PHACTR3Q96KR7 559 aa17.16■□□□□ 0.34
COL6A3-207ENST00000433762 MBIPQ9NS73 344 aa17.14■□□□□ 0.33
COL6A3-207ENST00000433762 EMILIN1Q9Y6C2 1016 aa17.14■□□□□ 0.33
COL6A3-207ENST00000433762 SLKQ9H2G2 1235 aaPredicted RBP17.14■□□□□ 0.33
COL6A3-207ENST00000433762 MFAP1P55081 439 aaKnown RBP17.13■□□□□ 0.33
COL6A3-207ENST00000433762 L1TD1Q5T7N2 865 aaKnown RBP17.13■□□□□ 0.33
COL6A3-207ENST00000433762 NME9Q86XW9 330 aa17.13■□□□□ 0.33
COL6A3-207ENST00000433762 OVOS2A0A0J9YW53 1432 aa17.13■□□□□ 0.33
COL6A3-207ENST00000433762 OVOS2Q6IE36 1432 aa17.13■□□□□ 0.33
COL6A3-207ENST00000433762 HSCBQ8IWL3 235 aa17.13■□□□□ 0.33
COL6A3-207ENST00000433762 KIAA0232Q92628 1395 aa17.12■□□□□ 0.33
COL6A3-207ENST00000433762 TNRQ92752 1358 aa17.12■□□□□ 0.33
COL6A3-207ENST00000433762 TWISTNBQ3B726 338 aaPredicted RBP17.12■□□□□ 0.33
COL6A3-207ENST00000433762 IL27Q8NEV9 243 aa17.12■□□□□ 0.33
COL6A3-207ENST00000433762 CIZ1Q9ULV3 898 aaPredicted RBP17.12■□□□□ 0.33
COL6A3-207ENST00000433762 TMEM2Q9UHN6 1383 aa17.12■□□□□ 0.33
COL6A3-207ENST00000433762 RIMS1Q86UR5 1692 aaKnown RBP17.11■□□□□ 0.33
COL6A3-207ENST00000433762 HMOX1P09601 288 aa17.11■□□□□ 0.33
COL6A3-207ENST00000433762 FMN2Q9NZ56 1722 aa17.1■□□□□ 0.33
COL6A3-207ENST00000433762 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.1■□□□□ 0.33
COL6A3-207ENST00000433762 USP31Q70CQ4 1352 aa17.1■□□□□ 0.33
COL6A3-207ENST00000433762 ADAMTS13Q76LX8 1427 aa17.1■□□□□ 0.33
COL6A3-207ENST00000433762 PLEKHG1Q9ULL1 1385 aa17.09■□□□□ 0.33
COL6A3-207ENST00000433762 PLEKHG3A1L390 1219 aa17.09■□□□□ 0.33
COL6A3-207ENST00000433762 FER1L4A9Z1Z3 1794 aa17.09■□□□□ 0.33
COL6A3-207ENST00000433762 MCM4P33991 863 aa17.09■□□□□ 0.33
COL6A3-207ENST00000433762 DDIT3P35638 169 aa17.09■□□□□ 0.33
COL6A3-207ENST00000433762 TTC21BQ7Z4L5 1316 aa17.08■□□□□ 0.33
COL6A3-207ENST00000433762 INTS3Q68E01 1043 aaKnown RBP17.08■□□□□ 0.33
COL6A3-207ENST00000433762 TSPYL6Q8N831 410 aa17.08■□□□□ 0.33
COL6A3-207ENST00000433762 LNPKQ9C0E8 428 aa17.08■□□□□ 0.33
COL6A3-207ENST00000433762 TXNDC2Q86VQ3 553 aa17.07■□□□□ 0.32
COL6A3-207ENST00000433762 ISY1Q9ULR0 285 aaKnown RBP17.07■□□□□ 0.32
COL6A3-207ENST00000433762 PRR36Q9H6K5 1346 aa17.07■□□□□ 0.32
COL6A3-207ENST00000433762 DDX11L8A8MPP1 907 aa17.07■□□□□ 0.32
COL6A3-207ENST00000433762 PTMSP20962 102 aa17.07■□□□□ 0.32
COL6A3-207ENST00000433762 USP6P35125 1406 aa17.07■□□□□ 0.32
COL6A3-207ENST00000433762 PEAK1Q9H792 1746 aa17.06■□□□□ 0.32
COL6A3-207ENST00000433762 BRPF3Q9ULD4 1205 aa17.06■□□□□ 0.32
COL6A3-207ENST00000433762 PTPRCP08575 1304 aa17.06■□□□□ 0.32
COL6A3-207ENST00000433762 USP54Q70EL1 1684 aa17.06■□□□□ 0.32
COL6A3-207ENST00000433762 SSH2Q76I76 1423 aa17.06■□□□□ 0.32
COL6A3-207ENST00000433762 ANKRD45Q5TZF3 282 aa17.06■□□□□ 0.32
COL6A3-207ENST00000433762 ARHGEF10O15013 1369 aa17.05■□□□□ 0.32
COL6A3-207ENST00000433762 CEBPAP49715 358 aaPredicted RBP17.05■□□□□ 0.32
COL6A3-207ENST00000433762 SENP3Q9H4L4 574 aaPredicted RBP17.05■□□□□ 0.32
COL6A3-207ENST00000433762 ROBO2Q9HCK4 1378 aa17.05■□□□□ 0.32
COL6A3-207ENST00000433762 DIP2AQ14689 1571 aa17.05■□□□□ 0.32
COL6A3-207ENST00000433762 CHL1O00533 1208 aa17.04■□□□□ 0.32
COL6A3-207ENST00000433762 FBLN1P23142 703 aa17.04■□□□□ 0.32
COL6A3-207ENST00000433762 SIRT2Q8IXJ6 389 aa17.04■□□□□ 0.32
COL6A3-207ENST00000433762 C8orf58Q8NAV2 365 aa17.04■□□□□ 0.32
COL6A3-207ENST00000433762 THUMPD2Q9BTF0 503 aaKnown RBP17.04■□□□□ 0.32
COL6A3-207ENST00000433762 RGS12O14924 1447 aa17.04■□□□□ 0.32
COL6A3-207ENST00000433762 DCTPP1Q9H773 170 aa17.04■□□□□ 0.32
COL6A3-207ENST00000433762 TTC21AQ8NDW8 1320 aa17.04■□□□□ 0.32
COL6A3-207ENST00000433762 PLPPR3Q6T4P5 718 aa17.03■□□□□ 0.32
COL6A3-207ENST00000433762 RPAP2Q8IXW5 612 aaPredicted RBP17.03■□□□□ 0.32
COL6A3-207ENST00000433762 CACNA1FO60840 1977 aa17.03■□□□□ 0.32
COL6A3-207ENST00000433762 CDC45O75419 566 aa17.03■□□□□ 0.32
COL6A3-207ENST00000433762 FAM43AQ8N2R8 423 aa17.03■□□□□ 0.32
COL6A3-207ENST00000433762 SLIT1O75093 1534 aa17.02■□□□□ 0.32
COL6A3-207ENST00000433762 EIF4A2Q14240 407 aaKnown RBP17.02■□□□□ 0.32
COL6A3-207ENST00000433762 ZRANB1Q9UGI0 708 aa17.02■□□□□ 0.32
COL6A3-207ENST00000433762 ATP10DQ9P241 1426 aa17.02■□□□□ 0.32
COL6A3-207ENST00000433762 FSD2A1L4K1 749 aa17.02■□□□□ 0.31
COL6A3-207ENST00000433762 RRS1Q15050 365 aaKnown RBP17.02■□□□□ 0.31
COL6A3-207ENST00000433762 N4BP2Q86UW6 1770 aaPredicted RBP17.02■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms