RNA–Protein interactions for RNA: ENST00000429411.5

HPS4-205, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 3,492 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-205ENST00000429411 GOLGA6L22H0YM25 854 aa10.02□□□□□ -0.8
HPS4-205ENST00000429411 TMEM2Q9UHN6 1383 aa10.02□□□□□ -0.8
HPS4-205ENST00000429411 MCM4P33991 863 aa10.02□□□□□ -0.81
HPS4-205ENST00000429411 FOXO3O43524 673 aa10.02□□□□□ -0.81
HPS4-205ENST00000429411 NME9Q86XW9 330 aa10.02□□□□□ -0.81
HPS4-205ENST00000429411 PANK2Q9BZ23 570 aa10.02□□□□□ -0.81
HPS4-205ENST00000429411 PRDM10Q9NQV6 1147 aa10.02□□□□□ -0.81
HPS4-205ENST00000429411 CHD1LQ86WJ1 897 aa10.01□□□□□ -0.81
HPS4-205ENST00000429411 TSPYL6Q8N831 410 aa10.01□□□□□ -0.81
HPS4-205ENST00000429411 RIMS2Q9UQ26 1411 aa10.01□□□□□ -0.81
HPS4-205ENST00000429411 FER1L4A9Z1Z3 1794 aa10.01□□□□□ -0.81
HPS4-205ENST00000429411 IQGAP3Q86VI3 1631 aa10.01□□□□□ -0.81
HPS4-205ENST00000429411 ABCC3O15438 1527 aa10.01□□□□□ -0.81
HPS4-205ENST00000429411 USP19O94966 1318 aa10.01□□□□□ -0.81
HPS4-205ENST00000429411 TWISTNBQ3B726 338 aaPredicted RBP10.01□□□□□ -0.81
HPS4-205ENST00000429411 LTV1Q96GA3 475 aaPredicted RBP10.01□□□□□ -0.81
HPS4-205ENST00000429411 COG3Q96JB2 828 aa10.01□□□□□ -0.81
HPS4-205ENST00000429411 RBM42Q9BTD8 480 aaKnown RBP10.01□□□□□ -0.81
HPS4-205ENST00000429411 NINLQ9Y2I6 1382 aa10.01□□□□□ -0.81
HPS4-205ENST00000429411 ADAMTS2O95450 1211 aa10.01□□□□□ -0.81
HPS4-205ENST00000429411 PHACTR3Q96KR7 559 aa10.01□□□□□ -0.81
HPS4-205ENST00000429411 MIS18AQ9NYP9 233 aa10.01□□□□□ -0.81
HPS4-205ENST00000429411 INSRP06213 1382 aa10□□□□□ -0.81
HPS4-205ENST00000429411 GBP4Q96PP9 640 aa10□□□□□ -0.81
HPS4-205ENST00000429411 E9PCH4 1651 aa10□□□□□ -0.81
HPS4-205ENST00000429411 INO80Q9ULG1 1556 aaPredicted RBP10□□□□□ -0.81
HPS4-205ENST00000429411 A0A1W2PP64 1363 aa10□□□□□ -0.81
HPS4-205ENST00000429411 NPC1L1Q9UHC9 1359 aa10□□□□□ -0.81
HPS4-205ENST00000429411 TRIM35Q9UPQ4 493 aa10□□□□□ -0.81
HPS4-205ENST00000429411 CLTCL1P53675 1640 aa10□□□□□ -0.81
HPS4-205ENST00000429411 CAMSAP1Q5T5Y3 1602 aa10□□□□□ -0.81
HPS4-205ENST00000429411 UNC13BO14795 1591 aa10□□□□□ -0.81
HPS4-205ENST00000429411 SETD1BQ9UPS6 1966 aaKnown RBP10□□□□□ -0.81
HPS4-205ENST00000429411 MEX3CQ5U5Q3 659 aaKnown RBP9.99□□□□□ -0.81
HPS4-205ENST00000429411 TMEM94Q12767 1356 aa9.99□□□□□ -0.81
HPS4-205ENST00000429411 ZNF526Q8TF50 670 aaPredicted RBP9.99□□□□□ -0.81
HPS4-205ENST00000429411 NPHP4O75161 1426 aaPredicted RBP9.99□□□□□ -0.81
HPS4-205ENST00000429411 KRT24Q2M2I5 525 aa9.99□□□□□ -0.81
HPS4-205ENST00000429411 KDM5AP29375 1690 aaKnown RBP9.98□□□□□ -0.81
HPS4-205ENST00000429411 DDX49Q9Y6V7 483 aaKnown RBP9.98□□□□□ -0.81
HPS4-205ENST00000429411 SYNMO15061 1565 aa9.98□□□□□ -0.81
HPS4-205ENST00000429411 HSPA1LP34931 641 aa9.98□□□□□ -0.81
HPS4-205ENST00000429411 GNAI1P63096 354 aa9.98□□□□□ -0.81
HPS4-205ENST00000429411 CALD1Q05682 793 aaKnown RBP9.98□□□□□ -0.81
HPS4-205ENST00000429411 SULT6B1Q6IMI4 303 aa9.98□□□□□ -0.81
HPS4-205ENST00000429411 ATAD2Q6PL18 1390 aa9.98□□□□□ -0.81
HPS4-205ENST00000429411 ANKRD36BQ8N2N9 1353 aa9.98□□□□□ -0.81
HPS4-205ENST00000429411 SMARCA5O60264 1052 aaPredicted RBP9.98□□□□□ -0.81
HPS4-205ENST00000429411 CASC1Q6TDU7 716 aa9.98□□□□□ -0.81
HPS4-205ENST00000429411 ZMYND15Q9H091 742 aa9.98□□□□□ -0.81
HPS4-205ENST00000429411 CHMP4BQ9H444 224 aaKnown RBP9.98□□□□□ -0.81
HPS4-205ENST00000429411 TRPM2O94759 1503 aa9.98□□□□□ -0.81
HPS4-205ENST00000429411 AGLP35573 1532 aa9.97□□□□□ -0.81
HPS4-205ENST00000429411 MCM10Q7L590 875 aa9.97□□□□□ -0.81
HPS4-205ENST00000429411 NGDNQ8NEJ9 315 aaKnown RBP9.97□□□□□ -0.81
HPS4-205ENST00000429411 RTF1Q92541 710 aaKnown RBP9.97□□□□□ -0.81
HPS4-205ENST00000429411 ZNF428Q96B54 188 aa9.97□□□□□ -0.81
HPS4-205ENST00000429411 RPGRIP1LQ68CZ1 1315 aa9.97□□□□□ -0.81
HPS4-205ENST00000429411 ORAI2Q96SN7 254 aa9.97□□□□□ -0.81
HPS4-205ENST00000429411 DDX11L8A8MPP1 907 aa9.97□□□□□ -0.81
HPS4-205ENST00000429411 TRIM6-TRIM34B2RNG4 842 aa9.97□□□□□ -0.81
HPS4-205ENST00000429411 FCHSD2O94868 740 aa9.96□□□□□ -0.81
HPS4-205ENST00000429411 C16orf71Q8IYS4 520 aaPredicted RBP9.96□□□□□ -0.82
HPS4-205ENST00000429411 VSIG10Q8N0Z9 540 aa9.96□□□□□ -0.82
HPS4-205ENST00000429411 SLAIN2Q9P270 581 aa9.96□□□□□ -0.82
HPS4-205ENST00000429411 NFE2L2Q16236 605 aa9.95□□□□□ -0.82
HPS4-205ENST00000429411 CCDC27Q2M243 656 aa9.95□□□□□ -0.82
HPS4-205ENST00000429411 MCTP1Q6DN14 999 aa9.95□□□□□ -0.82
HPS4-205ENST00000429411 RILPL2Q969X0 211 aa9.95□□□□□ -0.82
HPS4-205ENST00000429411 MBIPQ9NS73 344 aa9.95□□□□□ -0.82
HPS4-205ENST00000429411 XRCC6P12956 609 aaKnown RBP eCLIP9.95□□□□□ -0.826e-6■■■■■ 31.4
HPS4-205ENST00000429411 C8orf58Q8NAV2 365 aa9.95□□□□□ -0.82
HPS4-205ENST00000429411 ZBTB40Q9NUA8 1239 aa9.95□□□□□ -0.82
HPS4-205ENST00000429411 POLKQ9UBT6 870 aa9.95□□□□□ -0.82
HPS4-205ENST00000429411 RSPH6AQ9H0K4 717 aa9.95□□□□□ -0.82
HPS4-205ENST00000429411 A2ML1A8K2U0 1454 aa9.95□□□□□ -0.82
HPS4-205ENST00000429411 METP08581 1390 aa9.94□□□□□ -0.82
HPS4-205ENST00000429411 TBC1D9Q6ZT07 1266 aa9.94□□□□□ -0.82
HPS4-205ENST00000429411 AEBP1Q8IUX7 1158 aa9.94□□□□□ -0.82
HPS4-205ENST00000429411 FBXO41Q8TF61 875 aa9.94□□□□□ -0.82
HPS4-205ENST00000429411 TNPO1Q92973 898 aaKnown RBP9.94□□□□□ -0.82
HPS4-205ENST00000429411 API5Q9BZZ5 524 aaKnown RBP9.94□□□□□ -0.82
HPS4-205ENST00000429411 BCCIPQ9P287 314 aaKnown RBP eCLIP9.94□□□□□ -0.82
HPS4-205ENST00000429411 ADAMTSL3P82987 1691 aa9.94□□□□□ -0.82
HPS4-205ENST00000429411 TSHZ3Q63HK5 1081 aa9.94□□□□□ -0.82
HPS4-205ENST00000429411 CT47B1P0C2W7 299 aaPredicted RBP9.94□□□□□ -0.82
HPS4-205ENST00000429411 SSFA2P28290 1259 aa9.94□□□□□ -0.82
HPS4-205ENST00000429411 PSME1Q06323 249 aa9.94□□□□□ -0.82
HPS4-205ENST00000429411 LMOD3Q0VAK6 560 aa9.94□□□□□ -0.82
HPS4-205ENST00000429411 HDAC1Q13547 482 aaPredicted RBP9.94□□□□□ -0.82
HPS4-205ENST00000429411 ZNF592Q92610 1267 aa9.94□□□□□ -0.82
HPS4-205ENST00000429411 MSH6P52701 1360 aa9.93□□□□□ -0.82
HPS4-205ENST00000429411 F6X3S4 739 aa9.93□□□□□ -0.82
HPS4-205ENST00000429411 AMPHP49418 695 aa9.93□□□□□ -0.82
HPS4-205ENST00000429411 FAM43AQ8N2R8 423 aa9.93□□□□□ -0.82
HPS4-205ENST00000429411 CABLES1Q8TDN4 633 aa9.93□□□□□ -0.82
HPS4-205ENST00000429411 TBX22Q9Y458 520 aa9.93□□□□□ -0.82
HPS4-205ENST00000429411 CDC45O75419 566 aa9.93□□□□□ -0.82
HPS4-205ENST00000429411 SLC4A2P04920 1241 aa9.93□□□□□ -0.82
HPS4-205ENST00000429411 NUCB1Q02818 461 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms