RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 SLC4A10Q6U841 1118 aa15.15■□□□□ 0.02
PTPRN-204ENST00000423636 ANKRD45Q5TZF3 282 aa15.15■□□□□ 0.02
PTPRN-204ENST00000423636 MAP2P11137 1827 aaKnown RBP15.15■□□□□ 0.02
PTPRN-204ENST00000423636 VAMP4O75379 141 aa15.15■□□□□ 0.02
PTPRN-204ENST00000423636 PUS7Q96PZ0 661 aaKnown RBP15.14■□□□□ 0.01
PTPRN-204ENST00000423636 F6X3S4 739 aa15.14■□□□□ 0.01
PTPRN-204ENST00000423636 RTN4Q9NQC3 1192 aaKnown RBP15.13■□□□□ 0.01
PTPRN-204ENST00000423636 COL3A1P02461 1466 aaPredicted RBP15.13■□□□□ 0.01
PTPRN-204ENST00000423636 FOXD4L1Q9NU39 408 aa15.13■□□□□ 0.01
PTPRN-204ENST00000423636 LRRC7Q96NW7 1537 aa15.13■□□□□ 0.01
PTPRN-204ENST00000423636 FRAT2O75474 233 aaPredicted RBP15.12■□□□□ 0.01
PTPRN-204ENST00000423636 ABTB2Q8N961 1025 aa15.12■□□□□ 0.01
PTPRN-204ENST00000423636 MAP3K19Q56UN5 1328 aa15.11■□□□□ 0.01
PTPRN-204ENST00000423636 NGEFQ8N5V2 710 aa15.11■□□□□ 0.01
PTPRN-204ENST00000423636 USP19O94966 1318 aa15.11■□□□□ 0.01
PTPRN-204ENST00000423636 PTPRUQ92729 1446 aa15.11■□□□□ 0.01
PTPRN-204ENST00000423636 C16orf71Q8IYS4 520 aaPredicted RBP15.1■□□□□ 0.01
PTPRN-204ENST00000423636 DDX19BQ9UMR2 479 aa15.1■□□□□ 0.01
PTPRN-204ENST00000423636 MTHFSDQ2M296 383 aaKnown RBP15.09■□□□□ 0.01
PTPRN-204ENST00000423636 SMARCA5O60264 1052 aaPredicted RBP15.09■□□□□ 0.01
PTPRN-204ENST00000423636 NFKBIBQ15653 356 aa15.09■□□□□ 0.01
PTPRN-204ENST00000423636 DDX17Q92841 729 aaKnown RBP15.09■□□□□ 0.01
PTPRN-204ENST00000423636 MRPL50Q8N5N7 158 aaKnown RBP15.09■□□□□ 0.01
PTPRN-204ENST00000423636 ZBTB40Q9NUA8 1239 aa15.09■□□□□ 0.01
PTPRN-204ENST00000423636 PNPLA6Q8IY17 1366 aa15.08■□□□□ 0.01
PTPRN-204ENST00000423636 NINLQ9Y2I6 1382 aa15.08■□□□□ 0.01
PTPRN-204ENST00000423636 KIF13AQ9H1H9 1805 aa15.08■□□□□ 0.01
PTPRN-204ENST00000423636 ADAMTS13Q76LX8 1427 aa15.08■□□□□ 0.01
PTPRN-204ENST00000423636 ESCO1Q5FWF5 840 aa15.08■□□□□ 0
PTPRN-204ENST00000423636 G2E3Q7L622 706 aa15.08■□□□□ 0
PTPRN-204ENST00000423636 PPP6R1Q9UPN7 881 aa15.08■□□□□ 0
PTPRN-204ENST00000423636 GNAI1P63096 354 aa15.08■□□□□ 0
PTPRN-204ENST00000423636 EYA1Q99502 592 aa15.07■□□□□ 0
PTPRN-204ENST00000423636 PNNQ9H307 717 aaKnown RBP15.07■□□□□ 0
PTPRN-204ENST00000423636 EDC4Q6P2E9 1401 aaKnown RBP15.07■□□□□ 0
PTPRN-204ENST00000423636 IPO8O15397 1037 aaKnown RBP15.07■□□□□ 0
PTPRN-204ENST00000423636 CPSF1Q10570 1443 aaKnown RBP15.07■□□□□ 0
PTPRN-204ENST00000423636 SPATA31D1Q6ZQQ2 1576 aa15.07■□□□□ 0
PTPRN-204ENST00000423636 SLC4A2P04920 1241 aa15.07■□□□□ 0
PTPRN-204ENST00000423636 TSHZ3Q63HK5 1081 aa15.07■□□□□ 0
PTPRN-204ENST00000423636 ZNF692Q9BU19 519 aaPredicted RBP15.07■□□□□ 0
PTPRN-204ENST00000423636 OTUD7AQ8TE49 926 aaPredicted RBP15.06■□□□□ 0
PTPRN-204ENST00000423636 DDRGK1Q96HY6 314 aa15.06■□□□□ 0
PTPRN-204ENST00000423636 SIRT2Q8IXJ6 389 aa15.06■□□□□ 0
PTPRN-204ENST00000423636 ANXA1P04083 346 aa15.05■□□□□ 0
PTPRN-204ENST00000423636 NRXN3Q9Y4C0 1643 aa15.05■□□□□ 0
PTPRN-204ENST00000423636 FAM135BQ49AJ0 1406 aa15.05■□□□□ 0
PTPRN-204ENST00000423636 LRRC59Q96AG4 307 aaKnown RBP15.05■□□□□ -0
PTPRN-204ENST00000423636 CFAP44Q96MT7 982 aa15.05■□□□□ -0
PTPRN-204ENST00000423636 TSPYL4Q9UJ04 414 aa15.05■□□□□ -0
PTPRN-204ENST00000423636 ZBTB7BO15156 539 aaPredicted RBP15.04■□□□□ -0
PTPRN-204ENST00000423636 EIF2S2P20042 333 aaKnown RBP15.04■□□□□ -0
PTPRN-204ENST00000423636 THEMISQ8N1K5 641 aaPredicted RBP15.04■□□□□ -0
PTPRN-204ENST00000423636 RTF1Q92541 710 aaKnown RBP15.04■□□□□ -0
PTPRN-204ENST00000423636 ORAI2Q96SN7 254 aa15.04■□□□□ -0
PTPRN-204ENST00000423636 ATP7BP35670 1465 aa15.04■□□□□ -0
PTPRN-204ENST00000423636 KIF16BQ96L93 1317 aa15.03■□□□□ -0
PTPRN-204ENST00000423636 MEIS3Q99687 375 aa15.02■□□□□ -0
PTPRN-204ENST00000423636 IFT57Q9NWB7 429 aa15.02■□□□□ -0
PTPRN-204ENST00000423636 UPF2Q9HAU5 1272 aaKnown RBP15.02■□□□□ -0
PTPRN-204ENST00000423636 RBM42Q9BTD8 480 aaKnown RBP15.02□□□□□ -0.01
PTPRN-204ENST00000423636 AGLP35573 1532 aa15.01□□□□□ -0.01
PTPRN-204ENST00000423636 PSME1Q06323 249 aa15□□□□□ -0.01
PTPRN-204ENST00000423636 CHD1LQ86WJ1 897 aa15□□□□□ -0.01
PTPRN-204ENST00000423636 SIPA1L2Q9P2F8 1722 aaPredicted RBP15□□□□□ -0.01
PTPRN-204ENST00000423636 DLC1Q96QB1 1528 aa15□□□□□ -0.01
PTPRN-204ENST00000423636 GZF1Q9H116 711 aaPredicted RBP15□□□□□ -0.01
PTPRN-204ENST00000423636 MED14O60244 1454 aa15□□□□□ -0.01
PTPRN-204ENST00000423636 USP32Q8NFA0 1604 aa15□□□□□ -0.01
PTPRN-204ENST00000423636 TBC1D2Q9BYX2 928 aa14.99□□□□□ -0.01
PTPRN-204ENST00000423636 ZNF853P0CG23 659 aa14.99□□□□□ -0.01
PTPRN-204ENST00000423636 C22orf23Q9BZE7 217 aa14.99□□□□□ -0.01
PTPRN-204ENST00000423636 KIF20BQ96Q89 1820 aa14.99□□□□□ -0.01
PTPRN-204ENST00000423636 IL16Q14005 1332 aa14.98□□□□□ -0.01
PTPRN-204ENST00000423636 ADGRB2O60241 1585 aa14.98□□□□□ -0.01
PTPRN-204ENST00000423636 USP6P35125 1406 aa14.98□□□□□ -0.01
PTPRN-204ENST00000423636 PLEKHG3A1L390 1219 aa14.98□□□□□ -0.01
PTPRN-204ENST00000423636 KCNQ3O43525 872 aa14.98□□□□□ -0.01
PTPRN-204ENST00000423636 ZC3H6P61129 1189 aaKnown RBP14.98□□□□□ -0.01
PTPRN-204ENST00000423636 RIMS1Q86UR5 1692 aaKnown RBP14.98□□□□□ -0.01
PTPRN-204ENST00000423636 IL27Q8NEV9 243 aa14.98□□□□□ -0.01
PTPRN-204ENST00000423636 RGPD8O14715 1765 aaPredicted RBP14.97□□□□□ -0.01
PTPRN-204ENST00000423636 ALDH1L2Q3SY69 923 aa14.97□□□□□ -0.01
PTPRN-204ENST00000423636 LGR6Q9HBX8 967 aa14.97□□□□□ -0.01
PTPRN-204ENST00000423636 CABLES1Q8TDN4 633 aa14.97□□□□□ -0.01
PTPRN-204ENST00000423636 EXOC6BQ9Y2D4 811 aa14.97□□□□□ -0.01
PTPRN-204ENST00000423636 FKBP5Q13451 457 aaPredicted RBP14.96□□□□□ -0.01
PTPRN-204ENST00000423636 MPRIPQ6WCQ1 1025 aa14.96□□□□□ -0.01
PTPRN-204ENST00000423636 SETD1AO15047 1707 aaKnown RBP14.96□□□□□ -0.01
PTPRN-204ENST00000423636 PLEKHG1Q9ULL1 1385 aa14.96□□□□□ -0.02
PTPRN-204ENST00000423636 HDAC1Q13547 482 aaPredicted RBP14.95□□□□□ -0.02
PTPRN-204ENST00000423636 SMC5Q8IY18 1101 aa14.95□□□□□ -0.02
PTPRN-204ENST00000423636 TBX22Q9Y458 520 aa14.95□□□□□ -0.02
PTPRN-204ENST00000423636 HOXC9P31274 260 aa14.95□□□□□ -0.02
PTPRN-204ENST00000423636 NUCB1Q02818 461 aa14.95□□□□□ -0.02
PTPRN-204ENST00000423636 CALD1Q05682 793 aaKnown RBP14.95□□□□□ -0.02
PTPRN-204ENST00000423636 LMOD3Q0VAK6 560 aa14.95□□□□□ -0.02
PTPRN-204ENST00000423636 TBC1D32Q96NH3 1257 aa14.95□□□□□ -0.02
PTPRN-204ENST00000423636 PHAXQ9H814 394 aaKnown RBP14.95□□□□□ -0.02
PTPRN-204ENST00000423636 PHF8Q9UPP1 1060 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms