RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 HAP1P54257 671 aaPredicted RBP13.75□□□□□ -0.21
LIMS1-207ENST00000422797 RNF216Q9NWF9 866 aaPredicted RBP13.75□□□□□ -0.21
LIMS1-207ENST00000422797 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.75□□□□□ -0.21
LIMS1-207ENST00000422797 IBTKQ9P2D0 1353 aaPredicted RBP13.75□□□□□ -0.21
LIMS1-207ENST00000422797 GOLGA6L22H0YM25 854 aa13.74□□□□□ -0.21
LIMS1-207ENST00000422797 GNAI1P63096 354 aa13.74□□□□□ -0.21
LIMS1-207ENST00000422797 IFT57Q9NWB7 429 aa13.74□□□□□ -0.21
LIMS1-207ENST00000422797 ARHGEF40Q8TER5 1519 aa13.74□□□□□ -0.21
LIMS1-207ENST00000422797 RAB3GAP1Q15042 981 aa13.74□□□□□ -0.21
LIMS1-207ENST00000422797 UBE2Q2Q8WVN8 375 aa13.74□□□□□ -0.21
LIMS1-207ENST00000422797 GGNBP2Q9H3C7 697 aa13.74□□□□□ -0.21
LIMS1-207ENST00000422797 PREX1Q8TCU6 1659 aa13.73□□□□□ -0.21
LIMS1-207ENST00000422797 NFE2L2Q16236 605 aa13.73□□□□□ -0.21
LIMS1-207ENST00000422797 CLEC17AQ6ZS10 378 aa13.73□□□□□ -0.21
LIMS1-207ENST00000422797 API5Q9BZZ5 524 aaKnown RBP13.73□□□□□ -0.21
LIMS1-207ENST00000422797 GRPEL1Q9HAV7 217 aa13.73□□□□□ -0.21
LIMS1-207ENST00000422797 CDK12Q9NYV4 1490 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-207ENST00000422797 RRAGDQ9NQL2 400 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-207ENST00000422797 ABCC4O15439 1325 aa13.72□□□□□ -0.21
LIMS1-207ENST00000422797 K7ELQ4 463 aaPredicted RBP13.71□□□□□ -0.21
LIMS1-207ENST00000422797 CDC45O75419 566 aa13.71□□□□□ -0.21
LIMS1-207ENST00000422797 AATKQ6ZMQ8 1374 aa13.71□□□□□ -0.22
LIMS1-207ENST00000422797 YEATS2Q9ULM3 1422 aa13.7□□□□□ -0.22
LIMS1-207ENST00000422797 MRPL50Q8N5N7 158 aaKnown RBP13.7□□□□□ -0.22
LIMS1-207ENST00000422797 ALKQ9UM73 1620 aa13.7□□□□□ -0.22
LIMS1-207ENST00000422797 ZBTB7BO15156 539 aaPredicted RBP13.69□□□□□ -0.22
LIMS1-207ENST00000422797 HSP90AA1P07900 732 aaKnown RBP13.69□□□□□ -0.22
LIMS1-207ENST00000422797 IDI1Q13907 227 aa13.69□□□□□ -0.22
LIMS1-207ENST00000422797 TNPO1Q92973 898 aaKnown RBP13.69□□□□□ -0.22
LIMS1-207ENST00000422797 LNPKQ9C0E8 428 aa13.69□□□□□ -0.22
LIMS1-207ENST00000422797 CPSF1Q10570 1443 aaKnown RBP13.69□□□□□ -0.22
LIMS1-207ENST00000422797 EDC4Q6P2E9 1401 aaKnown RBP13.69□□□□□ -0.22
LIMS1-207ENST00000422797 RABEP1Q15276 862 aa13.69□□□□□ -0.22
LIMS1-207ENST00000422797 PRAM1Q96QH2 718 aa13.69□□□□□ -0.22
LIMS1-207ENST00000422797 RICTORQ6R327 1708 aa13.68□□□□□ -0.22
LIMS1-207ENST00000422797 ZNF853P0CG23 659 aa13.68□□□□□ -0.22
LIMS1-207ENST00000422797 PRKAR2BP31323 418 aa13.68□□□□□ -0.22
LIMS1-207ENST00000422797 PPP4R3CPQ6ZMV5 832 aa13.68□□□□□ -0.22
LIMS1-207ENST00000422797 SPRYD3Q8NCJ5 442 aa13.68□□□□□ -0.22
LIMS1-207ENST00000422797 TRIM44Q96DX7 344 aaPredicted RBP13.68□□□□□ -0.22
LIMS1-207ENST00000422797 CFAP65Q6ZU64 1925 aaKnown RBP13.68□□□□□ -0.22
LIMS1-207ENST00000422797 KDM4FA0A1W2PPD8 638 aa13.67□□□□□ -0.22
LIMS1-207ENST00000422797 VAMP4O75379 141 aa13.67□□□□□ -0.22
LIMS1-207ENST00000422797 GLIPR1L2Q4G1C9 344 aa13.67□□□□□ -0.22
LIMS1-207ENST00000422797 ANKRD45Q5TZF3 282 aa13.67□□□□□ -0.22
LIMS1-207ENST00000422797 ANP32BQ92688 251 aaKnown RBP13.67□□□□□ -0.22
LIMS1-207ENST00000422797 GZF1Q9H116 711 aaPredicted RBP13.67□□□□□ -0.22
LIMS1-207ENST00000422797 NUCB2P80303 420 aa13.66□□□□□ -0.22
LIMS1-207ENST00000422797 CCDC173Q0VFZ6 552 aa13.66□□□□□ -0.22
LIMS1-207ENST00000422797 TBC1D9Q6ZT07 1266 aa13.66□□□□□ -0.22
LIMS1-207ENST00000422797 CDK19Q9BWU1 502 aa13.66□□□□□ -0.22
LIMS1-207ENST00000422797 MINK1Q8N4C8 1332 aaPredicted RBP13.66□□□□□ -0.22
LIMS1-207ENST00000422797 ESPNB1AK53 854 aa13.65□□□□□ -0.22
LIMS1-207ENST00000422797 CASC1Q6TDU7 716 aa13.65□□□□□ -0.22
LIMS1-207ENST00000422797 KLHL40Q2TBA0 621 aa13.64□□□□□ -0.23
LIMS1-207ENST00000422797 KIF2CQ99661 725 aa13.64□□□□□ -0.23
LIMS1-207ENST00000422797 CWC22Q9HCG8 908 aaKnown RBP13.64□□□□□ -0.23
LIMS1-207ENST00000422797 STK26Q9P289 416 aa13.64□□□□□ -0.23
LIMS1-207ENST00000422797 POLKQ9UBT6 870 aa13.64□□□□□ -0.23
LIMS1-207ENST00000422797 MYO5BQ9ULV0 1848 aa13.63□□□□□ -0.23
LIMS1-207ENST00000422797 SAFB2Q14151 953 aaKnown RBP eCLIP13.63□□□□□ -0.23
LIMS1-207ENST00000422797 INTS3Q68E01 1043 aaKnown RBP13.63□□□□□ -0.23
LIMS1-207ENST00000422797 CNKSR2Q8WXI2 1034 aa13.63□□□□□ -0.23
LIMS1-207ENST00000422797 PANK2Q9BZ23 570 aa13.63□□□□□ -0.23
LIMS1-207ENST00000422797 RIMS2Q9UQ26 1411 aa13.62□□□□□ -0.23
LIMS1-207ENST00000422797 RRP9O43818 475 aaKnown RBP13.62□□□□□ -0.23
LIMS1-207ENST00000422797 TPM2P07951 284 aa13.62□□□□□ -0.23
LIMS1-207ENST00000422797 TWISTNBQ3B726 338 aaPredicted RBP13.62□□□□□ -0.23
LIMS1-207ENST00000422797 HS1BP3Q53T59 392 aa13.62□□□□□ -0.23
LIMS1-207ENST00000422797 RPAP2Q8IXW5 612 aaPredicted RBP13.62□□□□□ -0.23
LIMS1-207ENST00000422797 NAP1L5Q96NT1 182 aaPredicted RBP13.62□□□□□ -0.23
LIMS1-207ENST00000422797 PPP1R9BQ96SB3 815 aa13.62□□□□□ -0.23
LIMS1-207ENST00000422797 DCTPP1Q9H773 170 aa13.62□□□□□ -0.23
LIMS1-207ENST00000422797 CABP1Q9NZU7 370 aa13.62□□□□□ -0.23
LIMS1-207ENST00000422797 NRKQ7Z2Y5 1582 aa13.62□□□□□ -0.23
LIMS1-207ENST00000422797 KCNA4P22459 653 aa13.61□□□□□ -0.23
LIMS1-207ENST00000422797 IL13P35225 146 aa13.61□□□□□ -0.23
LIMS1-207ENST00000422797 KIAA0232Q92628 1395 aa13.61□□□□□ -0.23
LIMS1-207ENST00000422797 DIP2BQ9P265 1576 aa13.6□□□□□ -0.23
LIMS1-207ENST00000422797 TTC22Q5TAA0 569 aa13.6□□□□□ -0.23
LIMS1-207ENST00000422797 NUTM2DQ5VT03 806 aaPredicted RBP13.6□□□□□ -0.23
LIMS1-207ENST00000422797 SIRT1Q96EB6 747 aa13.6□□□□□ -0.23
LIMS1-207ENST00000422797 MBIPQ9NS73 344 aa13.6□□□□□ -0.23
LIMS1-207ENST00000422797 AGLP35573 1532 aa13.6□□□□□ -0.23
LIMS1-207ENST00000422797 PTPRCP08575 1304 aa13.6□□□□□ -0.23
LIMS1-207ENST00000422797 ST18O60284 1047 aa13.59□□□□□ -0.23
LIMS1-207ENST00000422797 ZNF445P59923 1031 aa13.59□□□□□ -0.23
LIMS1-207ENST00000422797 ANKRD44Q8N8A2 993 aa13.59□□□□□ -0.23
LIMS1-207ENST00000422797 SETD1AO15047 1707 aaKnown RBP13.59□□□□□ -0.23
LIMS1-207ENST00000422797 KNDC1Q76NI1 1749 aa13.59□□□□□ -0.23
LIMS1-207ENST00000422797 MON2Q7Z3U7 1717 aa13.59□□□□□ -0.23
LIMS1-207ENST00000422797 REC8O95072 547 aa13.59□□□□□ -0.23
LIMS1-207ENST00000422797 FAM69CQ0P6D2 419 aa13.59□□□□□ -0.23
LIMS1-207ENST00000422797 SPATA31D1Q6ZQQ2 1576 aa13.58□□□□□ -0.23
LIMS1-207ENST00000422797 BAG4O95429 457 aaKnown RBP13.58□□□□□ -0.24
LIMS1-207ENST00000422797 NASPP49321 788 aaPredicted RBP13.58□□□□□ -0.24
LIMS1-207ENST00000422797 TERF1P54274 439 aa13.58□□□□□ -0.24
LIMS1-207ENST00000422797 PLEKHM2Q8IWE5 1019 aa13.58□□□□□ -0.24
LIMS1-207ENST00000422797 SIRT2Q8IXJ6 389 aa13.58□□□□□ -0.24
LIMS1-207ENST00000422797 HMMRO75330 724 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms