RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 CHMP5Q9NZZ3 219 aa14.51□□□□□ -0.09
PTPRF-205ENST00000414879 BTBD11A6QL63 1104 aa14.51□□□□□ -0.09
PTPRF-205ENST00000414879 RRS1Q15050 365 aaKnown RBP14.51□□□□□ -0.09
PTPRF-205ENST00000414879 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.51□□□□□ -0.09
PTPRF-205ENST00000414879 CPLX1O14810 134 aa14.5□□□□□ -0.09
PTPRF-205ENST00000414879 MAST1Q9Y2H9 1570 aa14.5□□□□□ -0.09
PTPRF-205ENST00000414879 STARD3NLO95772 234 aa14.5□□□□□ -0.09
PTPRF-205ENST00000414879 RASSF8Q8NHQ8 419 aa14.5□□□□□ -0.09
PTPRF-205ENST00000414879 RBM42Q9BTD8 480 aaKnown RBP14.5□□□□□ -0.09
PTPRF-205ENST00000414879 TAF7Q15545 349 aaPredicted RBP14.49□□□□□ -0.09
PTPRF-205ENST00000414879 RALYLQ86SE5 291 aaKnown RBP14.49□□□□□ -0.09
PTPRF-205ENST00000414879 MSH6P52701 1360 aa14.49□□□□□ -0.09
PTPRF-205ENST00000414879 APPP05067 770 aa14.49□□□□□ -0.09
PTPRF-205ENST00000414879 C22orf23Q9BZE7 217 aa14.49□□□□□ -0.09
PTPRF-205ENST00000414879 ASXL1Q8IXJ9 1541 aa14.49□□□□□ -0.09
PTPRF-205ENST00000414879 NEUROD6Q96NK8 337 aa14.49□□□□□ -0.09
PTPRF-205ENST00000414879 MARCH6O60337 910 aa14.48□□□□□ -0.09
PTPRF-205ENST00000414879 NKTRP30414 1462 aaKnown RBP14.48□□□□□ -0.09
PTPRF-205ENST00000414879 CCDC158Q5M9N0 1113 aa14.48□□□□□ -0.09
PTPRF-205ENST00000414879 TSR2Q969E8 191 aaKnown RBP14.48□□□□□ -0.09
PTPRF-205ENST00000414879 TBX22Q9Y458 520 aa14.48□□□□□ -0.09
PTPRF-205ENST00000414879 CEBPAP49715 358 aaPredicted RBP14.47□□□□□ -0.09
PTPRF-205ENST00000414879 TEX13AQ9BXU3 409 aaPredicted RBP14.47□□□□□ -0.09
PTPRF-205ENST00000414879 ZSCAN25Q6NSZ9 544 aa14.47□□□□□ -0.09
PTPRF-205ENST00000414879 LRRCC1Q9C099 1032 aa14.47□□□□□ -0.09
PTPRF-205ENST00000414879 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.47□□□□□ -0.09
PTPRF-205ENST00000414879 HOOK1Q9UJC3 728 aaKnown RBP14.47□□□□□ -0.09
PTPRF-205ENST00000414879 PDIA4P13667 645 aaKnown RBP14.47□□□□□ -0.09
PTPRF-205ENST00000414879 NME9Q86XW9 330 aa14.47□□□□□ -0.09
PTPRF-205ENST00000414879 SAMD9LQ8IVG5 1584 aa14.47□□□□□ -0.09
PTPRF-205ENST00000414879 TRPM2O94759 1503 aa14.46□□□□□ -0.09
PTPRF-205ENST00000414879 ERCC6L2Q5T890 1561 aa14.46□□□□□ -0.09
PTPRF-205ENST00000414879 NPHP3Q7Z494 1330 aa14.46□□□□□ -0.09
PTPRF-205ENST00000414879 KRT28Q7Z3Y7 464 aa14.46□□□□□ -0.09
PTPRF-205ENST00000414879 ZMYM3Q14202 1370 aa14.46□□□□□ -0.09
PTPRF-205ENST00000414879 SLC3A2P08195 630 aaKnown RBP14.46□□□□□ -0.1
PTPRF-205ENST00000414879 SART3Q15020 963 aaKnown RBP14.46□□□□□ -0.1
PTPRF-205ENST00000414879 CCDC47Q96A33 483 aaKnown RBP14.46□□□□□ -0.1
PTPRF-205ENST00000414879 IL27Q8NEV9 243 aa14.45□□□□□ -0.1
PTPRF-205ENST00000414879 FSD1Q9BTV5 496 aa14.45□□□□□ -0.1
PTPRF-205ENST00000414879 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.45□□□□□ -0.1
PTPRF-205ENST00000414879 DISP3Q9P2K9 1392 aa14.45□□□□□ -0.1
PTPRF-205ENST00000414879 TTC37Q6PGP7 1564 aa14.45□□□□□ -0.1
PTPRF-205ENST00000414879 SAFBQ15424 915 aaKnown RBP eCLIP14.45□□□□□ -0.1
PTPRF-205ENST00000414879 HSP90AB3PQ58FF7 597 aa14.45□□□□□ -0.1
PTPRF-205ENST00000414879 LARP1Q6PKG0 1096 aaKnown RBP14.45□□□□□ -0.1
PTPRF-205ENST00000414879 ACEP12821 1306 aa14.45□□□□□ -0.1
PTPRF-205ENST00000414879 SF3B2Q13435 895 aaKnown RBP14.45□□□□□ -0.1
PTPRF-205ENST00000414879 DDX54Q8TDD1 881 aaKnown RBP14.45□□□□□ -0.1
PTPRF-205ENST00000414879 RABEP1Q15276 862 aa14.45□□□□□ -0.1
PTPRF-205ENST00000414879 ZNF652Q9Y2D9 606 aa14.45□□□□□ -0.1
PTPRF-205ENST00000414879 SMC3Q9UQE7 1217 aa14.44□□□□□ -0.1
PTPRF-205ENST00000414879 PTPRCP08575 1304 aa14.44□□□□□ -0.1
PTPRF-205ENST00000414879 ZFYVE9O95405 1425 aa14.44□□□□□ -0.1
PTPRF-205ENST00000414879 C11orf95C9JLR9 678 aaPredicted RBP14.44□□□□□ -0.1
PTPRF-205ENST00000414879 PDZRN3Q9UPQ7 1066 aa14.44□□□□□ -0.1
PTPRF-205ENST00000414879 RAB11FIP3O75154 756 aa14.44□□□□□ -0.1
PTPRF-205ENST00000414879 XBP1P17861 261 aa14.44□□□□□ -0.1
PTPRF-205ENST00000414879 NOL8Q76FK4 1167 aaKnown RBP14.44□□□□□ -0.1
PTPRF-205ENST00000414879 PZPP20742 1482 aa14.44□□□□□ -0.1
PTPRF-205ENST00000414879 ZC3H6P61129 1189 aaKnown RBP14.44□□□□□ -0.1
PTPRF-205ENST00000414879 PDCP20941 246 aa14.43□□□□□ -0.1
PTPRF-205ENST00000414879 WASHC4Q2M389 1173 aa14.43□□□□□ -0.1
PTPRF-205ENST00000414879 DHX16O60231 1041 aaKnown RBP14.43□□□□□ -0.1
PTPRF-205ENST00000414879 NPC1L1Q9UHC9 1359 aa14.43□□□□□ -0.1
PTPRF-205ENST00000414879 KDM5DQ9BY66 1539 aa14.43□□□□□ -0.1
PTPRF-205ENST00000414879 PLXNC1O60486 1568 aa14.43□□□□□ -0.1
PTPRF-205ENST00000414879 TULP1O00294 542 aaPredicted RBP14.43□□□□□ -0.1
PTPRF-205ENST00000414879 CCDC57Q2TAC2 916 aa14.43□□□□□ -0.1
PTPRF-205ENST00000414879 DUSP27Q5VZP5 1158 aa14.42□□□□□ -0.1
PTPRF-205ENST00000414879 CTDP1Q9Y5B0 961 aaPredicted RBP14.42□□□□□ -0.1
PTPRF-205ENST00000414879 POLR3AO14802 1390 aaPredicted RBP14.42□□□□□ -0.1
PTPRF-205ENST00000414879 MBD5Q9P267 1494 aa14.42□□□□□ -0.1
PTPRF-205ENST00000414879 CDC42BPBQ9Y5S2 1711 aa14.42□□□□□ -0.1
PTPRF-205ENST00000414879 BCAR3O75815 825 aa14.42□□□□□ -0.1
PTPRF-205ENST00000414879 CCDC27Q2M243 656 aa14.42□□□□□ -0.1
PTPRF-205ENST00000414879 MAGI2Q86UL8 1455 aa14.42□□□□□ -0.1
PTPRF-205ENST00000414879 HYPKQ9NX55 129 aa14.42□□□□□ -0.1
PTPRF-205ENST00000414879 DDX49Q9Y6V7 483 aaKnown RBP14.42□□□□□ -0.1
PTPRF-205ENST00000414879 FOXO3O43524 673 aa14.42□□□□□ -0.1
PTPRF-205ENST00000414879 NFXL1Q6ZNB6 911 aa14.42□□□□□ -0.1
PTPRF-205ENST00000414879 CNNM1Q9NRU3 951 aa14.42□□□□□ -0.1
PTPRF-205ENST00000414879 TMOD3Q9NYL9 352 aa14.42□□□□□ -0.1
PTPRF-205ENST00000414879 ANKRD1Q15327 319 aa14.41□□□□□ -0.1
PTPRF-205ENST00000414879 BRMS1Q9HCU9 246 aa14.41□□□□□ -0.1
PTPRF-205ENST00000414879 IFNL2Q8IZJ0 200 aa14.41□□□□□ -0.1
PTPRF-205ENST00000414879 PPIP5K1Q6PFW1 1433 aa14.41□□□□□ -0.1
PTPRF-205ENST00000414879 TPM2P07951 284 aa14.4□□□□□ -0.1
PTPRF-205ENST00000414879 SOS1Q07889 1333 aaPredicted RBP14.4□□□□□ -0.1
PTPRF-205ENST00000414879 SIRT1Q96EB6 747 aa14.4□□□□□ -0.1
PTPRF-205ENST00000414879 DBF4Q9UBU7 674 aaPredicted RBP14.4□□□□□ -0.1
PTPRF-205ENST00000414879 DEKP35659 375 aaKnown RBP14.4□□□□□ -0.1
PTPRF-205ENST00000414879 NACAP1Q9BZK3 213 aa14.4□□□□□ -0.1
PTPRF-205ENST00000414879 CEP126Q9P2H0 1117 aa14.4□□□□□ -0.1
PTPRF-205ENST00000414879 PIK3C2GO75747 1445 aa14.39□□□□□ -0.11
PTPRF-205ENST00000414879 C19orf44Q9H6X5 657 aa14.39□□□□□ -0.11
PTPRF-205ENST00000414879 EMILIN1Q9Y6C2 1016 aa14.39□□□□□ -0.11
PTPRF-205ENST00000414879 ABCC1P33527 1531 aa14.39□□□□□ -0.11
PTPRF-205ENST00000414879 NUTM2BA6NNL0 878 aaPredicted RBP14.39□□□□□ -0.11
PTPRF-205ENST00000414879 NUTM2EB1AL46 878 aaPredicted RBP14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms