RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 DDX58O95786 925 aaKnown RBP15.15■□□□□ 0.02
COL6A3-206ENST00000409809 RUNDC1Q96C34 613 aa15.15■□□□□ 0.02
COL6A3-206ENST00000409809 NUP62CLQ9H1M0 184 aa15.15■□□□□ 0.02
COL6A3-206ENST00000409809 CDKL5O76039 1030 aa15.15■□□□□ 0.02
COL6A3-206ENST00000409809 TERF1P54274 439 aa15.15■□□□□ 0.02
COL6A3-206ENST00000409809 CCDC50Q8IVM0 306 aa15.15■□□□□ 0.02
COL6A3-206ENST00000409809 SPC24Q8NBT2 197 aa15.15■□□□□ 0.02
COL6A3-206ENST00000409809 SMARCC1Q92922 1105 aaPredicted RBP15.15■□□□□ 0.02
COL6A3-206ENST00000409809 CEP63Q96MT8 703 aa15.15■□□□□ 0.02
COL6A3-206ENST00000409809 TAOK3Q9H2K8 898 aa15.15■□□□□ 0.02
COL6A3-206ENST00000409809 ZSCAN31Q96LW9 406 aaPredicted RBP15.15■□□□□ 0.02
COL6A3-206ENST00000409809 CECR2Q9BXF3 1484 aa15.15■□□□□ 0.02
COL6A3-206ENST00000409809 DESP17661 470 aa15.14■□□□□ 0.01
COL6A3-206ENST00000409809 RSRC1Q96IZ7 334 aaKnown RBP15.14■□□□□ 0.01
COL6A3-206ENST00000409809 CASQ1P31415 396 aa15.14■□□□□ 0.01
COL6A3-206ENST00000409809 C11orf95C9JLR9 678 aaPredicted RBP15.14■□□□□ 0.01
COL6A3-206ENST00000409809 NFXL1Q6ZNB6 911 aa15.14■□□□□ 0.01
COL6A3-206ENST00000409809 DDX46Q7L014 1031 aaKnown RBP15.14■□□□□ 0.01
COL6A3-206ENST00000409809 NSRP1Q9H0G5 558 aaKnown RBP15.14■□□□□ 0.01
COL6A3-206ENST00000409809 KIF3CO14782 793 aa15.14■□□□□ 0.01
COL6A3-206ENST00000409809 GNAI1P63096 354 aa15.14■□□□□ 0.01
COL6A3-206ENST00000409809 CBX1P83916 185 aa15.13■□□□□ 0.01
COL6A3-206ENST00000409809 TTC31Q49AM3 519 aaPredicted RBP15.13■□□□□ 0.01
COL6A3-206ENST00000409809 CCAR1Q8IX12 1150 aaKnown RBP15.13■□□□□ 0.01
COL6A3-206ENST00000409809 C9orf78Q9NZ63 289 aaPredicted RBP15.13■□□□□ 0.01
COL6A3-206ENST00000409809 UPF3BQ9BZI7 483 aaKnown RBP15.13■□□□□ 0.01
COL6A3-206ENST00000409809 DAAM2Q86T65 1068 aa15.13■□□□□ 0.01
COL6A3-206ENST00000409809 L3MBTL2Q969R5 705 aa15.13■□□□□ 0.01
COL6A3-206ENST00000409809 PPP6R1Q9UPN7 881 aa15.13■□□□□ 0.01
COL6A3-206ENST00000409809 SARNPP82979 210 aaKnown RBP15.13■□□□□ 0.01
COL6A3-206ENST00000409809 SH2D4BQ5SQS7 431 aa15.12■□□□□ 0.01
COL6A3-206ENST00000409809 MIPOL1Q8TD10 442 aa15.12■□□□□ 0.01
COL6A3-206ENST00000409809 RRBP1Q9P2E9 1410 aaKnown RBP15.12■□□□□ 0.01
COL6A3-206ENST00000409809 STK38Q15208 465 aa15.12■□□□□ 0.01
COL6A3-206ENST00000409809 TAF4BQ92750 862 aa15.12■□□□□ 0.01
COL6A3-206ENST00000409809 RASSF4Q9H2L5 321 aa15.12■□□□□ 0.01
COL6A3-206ENST00000409809 G3BP1Q13283 466 aaKnown RBP eCLIP15.12■□□□□ 0.01
COL6A3-206ENST00000409809 ZNF428Q96B54 188 aa15.12■□□□□ 0.01
COL6A3-206ENST00000409809 SCAND2PQ9GZW5 306 aaPredicted RBP15.12■□□□□ 0.01
COL6A3-206ENST00000409809 CETN2P41208 172 aa15.12■□□□□ 0.01
COL6A3-206ENST00000409809 LRRFIP2Q9Y608 721 aaKnown RBP15.11■□□□□ 0.01
COL6A3-206ENST00000409809 STMN4Q9H169 189 aaPredicted RBP15.11■□□□□ 0.01
COL6A3-206ENST00000409809 TAX1BP1Q86VP1 789 aa15.11■□□□□ 0.01
COL6A3-206ENST00000409809 FAM193AP78312 1265 aa15.11■□□□□ 0.01
COL6A3-206ENST00000409809 ARFGAP3Q9NP61 516 aa15.11■□□□□ 0.01
COL6A3-206ENST00000409809 CADPSQ9ULU8 1353 aa15.11■□□□□ 0.01
COL6A3-206ENST00000409809 EVC2Q86UK5 1308 aa15.1■□□□□ 0.01
COL6A3-206ENST00000409809 USH1CQ9Y6N9 552 aa15.1■□□□□ 0.01
COL6A3-206ENST00000409809 ATAD2Q6PL18 1390 aa15.1■□□□□ 0.01
COL6A3-206ENST00000409809 VPS36Q86VN1 386 aa15.1■□□□□ 0.01
COL6A3-206ENST00000409809 FIBPO43427 364 aa15.1■□□□□ 0.01
COL6A3-206ENST00000409809 CCDC150Q8NCX0 1101 aa15.1■□□□□ 0.01
COL6A3-206ENST00000409809 NEK4P51957 841 aa15.1■□□□□ 0.01
COL6A3-206ENST00000409809 IPO4Q8TEX9 1081 aaKnown RBP15.09■□□□□ 0.01
COL6A3-206ENST00000409809 RBM25P49756 843 aaKnown RBP15.09■□□□□ 0.01
COL6A3-206ENST00000409809 KRT32Q14532 448 aa15.09■□□□□ 0.01
COL6A3-206ENST00000409809 PLIN1O60240 522 aa15.09■□□□□ 0.01
COL6A3-206ENST00000409809 TICAM2Q86XR7 235 aa15.09■□□□□ 0.01
COL6A3-206ENST00000409809 CYP46A1Q9Y6A2 500 aa15.09■□□□□ 0.01
COL6A3-206ENST00000409809 FMNL2Q96PY5 1086 aa15.08■□□□□ 0.01
COL6A3-206ENST00000409809 ANO10Q9NW15 660 aa15.08■□□□□ 0.01
COL6A3-206ENST00000409809 GBP6Q6ZN66 633 aa15.08■□□□□ 0
COL6A3-206ENST00000409809 A0A1B0GUL7 405 aa15.08■□□□□ 0
COL6A3-206ENST00000409809 GNAI3P08754 354 aa15.08■□□□□ 0
COL6A3-206ENST00000409809 CEP112Q8N8E3 955 aa15.08■□□□□ 0
COL6A3-206ENST00000409809 GABPB1Q06547 395 aaPredicted RBP15.08■□□□□ 0
COL6A3-206ENST00000409809 TTC14Q96N46 770 aa15.08■□□□□ 0
COL6A3-206ENST00000409809 GTF2F1P35269 517 aaKnown RBP eCLIP15.07■□□□□ 0
COL6A3-206ENST00000409809 ZHX1Q9UKY1 873 aaPredicted RBP15.07■□□□□ 0
COL6A3-206ENST00000409809 ZFYVE27Q5T4F4 411 aa15.07■□□□□ 0
COL6A3-206ENST00000409809 CDK5RAP3Q96JB5 506 aa15.07■□□□□ 0
COL6A3-206ENST00000409809 RNF168Q8IYW5 571 aaPredicted RBP15.07■□□□□ 0
COL6A3-206ENST00000409809 SPATA32Q96LK8 384 aa15.07■□□□□ 0
COL6A3-206ENST00000409809 ALS2CR12Q96Q35 445 aa15.07■□□□□ 0
COL6A3-206ENST00000409809 SPA17Q15506 151 aa15.07■□□□□ 0
COL6A3-206ENST00000409809 MSL1Q68DK7 614 aa15.07■□□□□ 0
COL6A3-206ENST00000409809 ME1P48163 572 aa15.06■□□□□ 0
COL6A3-206ENST00000409809 CKAP4Q07065 602 aaKnown RBP15.06■□□□□ 0
COL6A3-206ENST00000409809 KAT6BQ8WYB5 2073 aa15.06■□□□□ 0
COL6A3-206ENST00000409809 TRIM22Q8IYM9 498 aa15.06■□□□□ 0
COL6A3-206ENST00000409809 ZFYP08048 801 aaPredicted RBP15.06■□□□□ 0
COL6A3-206ENST00000409809 CEP131Q9UPN4 1083 aa15.06■□□□□ 0
COL6A3-206ENST00000409809 CEP83Q9Y592 693 aa15.06■□□□□ 0
COL6A3-206ENST00000409809 POTEDQ86YR6 584 aa15.06■□□□□ 0
COL6A3-206ENST00000409809 EBAG9O00559 213 aa15.06■□□□□ 0
COL6A3-206ENST00000409809 FGFR1OPO95684 399 aaKnown RBP15.06■□□□□ 0
COL6A3-206ENST00000409809 KIF21BO75037 1637 aa15.05■□□□□ 0
COL6A3-206ENST00000409809 LMOD2Q6P5Q4 547 aa15.05■□□□□ 0
COL6A3-206ENST00000409809 B4GALNT4Q76KP1 1039 aa15.05■□□□□ 0
COL6A3-206ENST00000409809 SLC3A2P08195 630 aaKnown RBP15.05■□□□□ 0
COL6A3-206ENST00000409809 PAFAH1B1P43034 410 aa15.05■□□□□ 0
COL6A3-206ENST00000409809 IFFO1Q0D2I5 559 aa15.05■□□□□ 0
COL6A3-206ENST00000409809 WASF1Q92558 559 aa15.05■□□□□ 0
COL6A3-206ENST00000409809 TNNT1P13805 278 aa15.05■□□□□ -0
COL6A3-206ENST00000409809 LMAN1P49257 510 aa15.05■□□□□ -0
COL6A3-206ENST00000409809 PANK3Q9H999 370 aa15.05■□□□□ -0
COL6A3-206ENST00000409809 OGFRQ9NZT2 677 aa15.05■□□□□ -0
COL6A3-206ENST00000409809 OPA1O60313 960 aa15.04■□□□□ -0
COL6A3-206ENST00000409809 RNF187Q5TA31 235 aaPredicted RBP15.04■□□□□ -0
COL6A3-206ENST00000409809 LNPKQ9C0E8 428 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms