RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 BACH2Q9BYV9 841 aa25.9■■□□□ 1.74
USP39-204ENST00000409766 FMN2Q9NZ56 1722 aa25.89■■□□□ 1.74
USP39-204ENST00000409766 DLG5Q8TDM6 1919 aa25.89■■□□□ 1.74
USP39-204ENST00000409766 NGDNQ8NEJ9 315 aaKnown RBP25.88■■□□□ 1.73
USP39-204ENST00000409766 EIF4A2Q14240 407 aaKnown RBP25.88■■□□□ 1.73
USP39-204ENST00000409766 ZKSCAN2Q63HK3 967 aa25.87■■□□□ 1.73
USP39-204ENST00000409766 SSH1Q8WYL5 1049 aa25.87■■□□□ 1.73
USP39-204ENST00000409766 IGHDP01880 384 aa25.87■■□□□ 1.73
USP39-204ENST00000409766 SMC4Q9NTJ3 1288 aa25.87■■□□□ 1.73
USP39-204ENST00000409766 CALD1Q05682 793 aaKnown RBP25.86■■□□□ 1.73
USP39-204ENST00000409766 PIK3C2AO00443 1686 aa25.84■■□□□ 1.73
USP39-204ENST00000409766 RGPD1P0DJD0 1748 aa25.84■■□□□ 1.73
USP39-204ENST00000409766 THUMPD2Q9BTF0 503 aaKnown RBP25.83■■□□□ 1.73
USP39-204ENST00000409766 LMOD3Q0VAK6 560 aa25.82■■□□□ 1.72
USP39-204ENST00000409766 HSP90AB2PQ58FF8 381 aa25.82■■□□□ 1.72
USP39-204ENST00000409766 DZIP1LQ8IYY4 767 aaKnown RBP25.82■■□□□ 1.72
USP39-204ENST00000409766 MVPQ14764 893 aaKnown RBP25.81■■□□□ 1.72
USP39-204ENST00000409766 ANP32EQ9BTT0 268 aa25.81■■□□□ 1.72
USP39-204ENST00000409766 IFT57Q9NWB7 429 aa25.81■■□□□ 1.72
USP39-204ENST00000409766 ZNF853P0CG23 659 aa25.81■■□□□ 1.72
USP39-204ENST00000409766 ALDH1L2Q3SY69 923 aa25.8■■□□□ 1.72
USP39-204ENST00000409766 SULT6B1Q6IMI4 303 aa25.8■■□□□ 1.72
USP39-204ENST00000409766 AEBP1Q8IUX7 1158 aa25.8■■□□□ 1.72
USP39-204ENST00000409766 MAP3K19Q56UN5 1328 aa25.8■■□□□ 1.72
USP39-204ENST00000409766 TRIM27P14373 513 aa25.8■■□□□ 1.72
USP39-204ENST00000409766 ANP32AP39687 249 aaKnown RBP25.8■■□□□ 1.72
USP39-204ENST00000409766 GNAI1P63096 354 aa25.8■■□□□ 1.72
USP39-204ENST00000409766 ZNF428Q96B54 188 aa25.8■■□□□ 1.72
USP39-204ENST00000409766 LAS1LQ9Y4W2 734 aaKnown RBP25.8■■□□□ 1.72
USP39-204ENST00000409766 FTSJ3Q8IY81 847 aaKnown RBP25.79■■□□□ 1.72
USP39-204ENST00000409766 ATF7IPQ6VMQ6 1270 aa25.78■■□□□ 1.72
USP39-204ENST00000409766 PCDHB15Q9Y5E8 787 aa25.78■■□□□ 1.72
USP39-204ENST00000409766 SOX12O15370 315 aa25.78■■□□□ 1.72
USP39-204ENST00000409766 NOB1Q9ULX3 412 aaKnown RBP25.77■■□□□ 1.72
USP39-204ENST00000409766 SBNO1A3KN83 1393 aa25.77■■□□□ 1.72
USP39-204ENST00000409766 MARF1Q9Y4F3 1742 aaKnown RBP25.76■■□□□ 1.71
USP39-204ENST00000409766 KIF16BQ96L93 1317 aa25.76■■□□□ 1.71
USP39-204ENST00000409766 USP54Q70EL1 1684 aa25.76■■□□□ 1.71
USP39-204ENST00000409766 FLT4P35916 1363 aa25.76■■□□□ 1.71
USP39-204ENST00000409766 CFAP44Q96MT7 982 aa25.76■■□□□ 1.71
USP39-204ENST00000409766 BRPF1P55201 1214 aaPredicted RBP25.75■■□□□ 1.71
USP39-204ENST00000409766 MBIPQ9NS73 344 aa25.75■■□□□ 1.71
USP39-204ENST00000409766 FAM83GA6ND36 823 aa25.74■■□□□ 1.71
USP39-204ENST00000409766 VAMP4O75379 141 aa25.73■■□□□ 1.71
USP39-204ENST00000409766 ARHGEF10O15013 1369 aa25.73■■□□□ 1.71
USP39-204ENST00000409766 IPO8O15397 1037 aaKnown RBP25.73■■□□□ 1.71
USP39-204ENST00000409766 NLRP6P59044 892 aa25.73■■□□□ 1.71
USP39-204ENST00000409766 IPO9Q96P70 1041 aaKnown RBP25.73■■□□□ 1.71
USP39-204ENST00000409766 RGS3P49796 1198 aa25.72■■□□□ 1.71
USP39-204ENST00000409766 NPHP4O75161 1426 aaPredicted RBP25.72■■□□□ 1.71
USP39-204ENST00000409766 TSPYL6Q8N831 410 aa25.71■■□□□ 1.71
USP39-204ENST00000409766 DCTN1Q14203 1278 aa25.7■■□□□ 1.7
USP39-204ENST00000409766 DDX19BQ9UMR2 479 aa25.7■■□□□ 1.7
USP39-204ENST00000409766 ADGRL3Q9HAR2 1447 aa25.7■■□□□ 1.7
USP39-204ENST00000409766 FAM161AQ3B820 660 aa25.69■■□□□ 1.7
USP39-204ENST00000409766 RBM33Q96EV2 1170 aaKnown RBP25.69■■□□□ 1.7
USP39-204ENST00000409766 PHF8Q9UPP1 1060 aa25.69■■□□□ 1.7
USP39-204ENST00000409766 AMPHP49418 695 aa25.68■■□□□ 1.7
USP39-204ENST00000409766 KDRP35968 1356 aa25.68■■□□□ 1.7
USP39-204ENST00000409766 KIF24Q5T7B8 1368 aa25.68■■□□□ 1.7
USP39-204ENST00000409766 C8orf34Q49A92 452 aa25.68■■□□□ 1.7
USP39-204ENST00000409766 ITPRIPQ8IWB1 547 aa25.68■■□□□ 1.7
USP39-204ENST00000409766 RWDD1Q9H446 243 aaPredicted RBP25.68■■□□□ 1.7
USP39-204ENST00000409766 TMEM57Q8N5G2 664 aa25.67■■□□□ 1.7
USP39-204ENST00000409766 ABTB2Q8N961 1025 aa25.67■■□□□ 1.7
USP39-204ENST00000409766 MRPL50Q8N5N7 158 aaKnown RBP25.66■■□□□ 1.7
USP39-204ENST00000409766 TWISTNBQ3B726 338 aaPredicted RBP25.66■■□□□ 1.7
USP39-204ENST00000409766 ERICH6Q7L0X2 663 aa25.66■■□□□ 1.7
USP39-204ENST00000409766 IGSF1Q8N6C5 1336 aa25.65■■□□□ 1.7
USP39-204ENST00000409766 NUTM2GQ5VZR2 741 aa25.65■■□□□ 1.7
USP39-204ENST00000409766 NPM2Q86SE8 214 aaKnown RBP25.65■■□□□ 1.7
USP39-204ENST00000409766 C8orf58Q8NAV2 365 aa25.65■■□□□ 1.7
USP39-204ENST00000409766 NOP58Q9Y2X3 529 aaKnown RBP25.65■■□□□ 1.7
USP39-204ENST00000409766 PAK3O75914 559 aaPredicted RBP25.64■■□□□ 1.69
USP39-204ENST00000409766 ARHGAP45Q92619 1136 aa25.64■■□□□ 1.69
USP39-204ENST00000409766 EYA1Q99502 592 aa25.64■■□□□ 1.69
USP39-204ENST00000409766 ELL2O00472 640 aaPredicted RBP25.63■■□□□ 1.69
USP39-204ENST00000409766 HOXC9P31274 260 aa25.62■■□□□ 1.69
USP39-204ENST00000409766 ZBTB40Q9NUA8 1239 aa25.62■■□□□ 1.69
USP39-204ENST00000409766 CHL1O00533 1208 aa25.61■■□□□ 1.69
USP39-204ENST00000409766 MCM10Q7L590 875 aa25.61■■□□□ 1.69
USP39-204ENST00000409766 NWD1Q149M9 1564 aa25.61■■□□□ 1.69
USP39-204ENST00000409766 HDAC1Q13547 482 aaPredicted RBP25.59■■□□□ 1.69
USP39-204ENST00000409766 MTHFSDQ2M296 383 aaKnown RBP25.59■■□□□ 1.69
USP39-204ENST00000409766 VIRMAQ69YN4 1812 aaKnown RBP25.59■■□□□ 1.69
USP39-204ENST00000409766 PDZRN3Q9UPQ7 1066 aa25.59■■□□□ 1.69
USP39-204ENST00000409766 CRB1P82279 1406 aa25.59■■□□□ 1.69
USP39-204ENST00000409766 ESCO1Q5FWF5 840 aa25.58■■□□□ 1.69
USP39-204ENST00000409766 ZBTB47Q9UFB7 747 aaPredicted RBP25.57■■□□□ 1.68
USP39-204ENST00000409766 LTN1O94822 1766 aa25.57■■□□□ 1.68
USP39-204ENST00000409766 FOXO3O43524 673 aa25.56■■□□□ 1.68
USP39-204ENST00000409766 C14orf37Q86TY3 774 aa25.56■■□□□ 1.68
USP39-204ENST00000409766 RTL1A6NKG5 1358 aa25.55■■□□□ 1.68
USP39-204ENST00000409766 KIAA0232Q92628 1395 aa25.55■■□□□ 1.68
USP39-204ENST00000409766 PSME1Q06323 249 aa25.55■■□□□ 1.68
USP39-204ENST00000409766 ABCC4O15439 1325 aa25.54■■□□□ 1.68
USP39-204ENST00000409766 NFAT5O94916 1531 aa25.54■■□□□ 1.68
USP39-204ENST00000409766 GAS2L2Q8NHY3 880 aa25.54■■□□□ 1.68
USP39-204ENST00000409766 KDM4FA0A1W2PPD8 638 aa25.52■■□□□ 1.68
USP39-204ENST00000409766 ZBTB7BO15156 539 aaPredicted RBP25.52■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms