RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 CT47B1P0C2W7 299 aaPredicted RBP24.56■■□□□ 1.52
USP39-202ENST00000409025 RARSP54136 660 aaKnown RBP24.56■■□□□ 1.52
USP39-202ENST00000409025 PSME1Q06323 249 aa24.55■■□□□ 1.52
USP39-202ENST00000409025 AMPHP49418 695 aa24.55■■□□□ 1.52
USP39-202ENST00000409025 TSR2Q969E8 191 aaKnown RBP24.55■■□□□ 1.52
USP39-202ENST00000409025 KDM4FA0A1W2PPD8 638 aa24.54■■□□□ 1.52
USP39-202ENST00000409025 NUTM2GQ5VZR2 741 aa24.54■■□□□ 1.52
USP39-202ENST00000409025 RGPD1P0DJD0 1748 aa24.54■■□□□ 1.52
USP39-202ENST00000409025 CALD1Q05682 793 aaKnown RBP24.53■■□□□ 1.52
USP39-202ENST00000409025 SULT6B1Q6IMI4 303 aa24.53■■□□□ 1.52
USP39-202ENST00000409025 CANXP27824 592 aaKnown RBP24.53■■□□□ 1.52
USP39-202ENST00000409025 LMOD3Q0VAK6 560 aa24.53■■□□□ 1.52
USP39-202ENST00000409025 KIF24Q5T7B8 1368 aa24.52■■□□□ 1.52
USP39-202ENST00000409025 C19orf44Q9H6X5 657 aa24.52■■□□□ 1.52
USP39-202ENST00000409025 PDE3AQ14432 1141 aa24.51■■□□□ 1.51
USP39-202ENST00000409025 ARHGEF10O15013 1369 aa24.51■■□□□ 1.51
USP39-202ENST00000409025 EXOSC9Q06265 439 aaKnown RBP24.5■■□□□ 1.51
USP39-202ENST00000409025 AEBP1Q8IUX7 1158 aa24.5■■□□□ 1.51
USP39-202ENST00000409025 HSPA2P54652 639 aa24.49■■□□□ 1.51
USP39-202ENST00000409025 ORAI2Q96SN7 254 aa24.49■■□□□ 1.51
USP39-202ENST00000409025 DLG5Q8TDM6 1919 aa24.49■■□□□ 1.51
USP39-202ENST00000409025 FRAT1Q92837 279 aaPredicted RBP24.47■■□□□ 1.51
USP39-202ENST00000409025 NCOA3Q9Y6Q9 1424 aa24.46■■□□□ 1.51
USP39-202ENST00000409025 STRCP1A6NGW2 1772 aa24.46■■□□□ 1.51
USP39-202ENST00000409025 KIF1AQ12756 1690 aa24.46■■□□□ 1.51
USP39-202ENST00000409025 HOXC9P31274 260 aa24.45■■□□□ 1.51
USP39-202ENST00000409025 C1orf167Q5SNV9 1468 aa24.45■■□□□ 1.51
USP39-202ENST00000409025 TMEM94Q12767 1356 aa24.45■■□□□ 1.5
USP39-202ENST00000409025 GNAI1P63096 354 aa24.45■■□□□ 1.5
USP39-202ENST00000409025 IFT57Q9NWB7 429 aa24.45■■□□□ 1.5
USP39-202ENST00000409025 FOXO3O43524 673 aa24.44■■□□□ 1.5
USP39-202ENST00000409025 LAS1LQ9Y4W2 734 aaKnown RBP24.44■■□□□ 1.5
USP39-202ENST00000409025 RTL1A6NKG5 1358 aa24.44■■□□□ 1.5
USP39-202ENST00000409025 ATF3P18847 181 aa24.43■■□□□ 1.5
USP39-202ENST00000409025 THUMPD2Q9BTF0 503 aaKnown RBP24.43■■□□□ 1.5
USP39-202ENST00000409025 BCL2L13Q9BXK5 485 aa24.43■■□□□ 1.5
USP39-202ENST00000409025 IGSF1Q8N6C5 1336 aa24.42■■□□□ 1.5
USP39-202ENST00000409025 DCCP43146 1447 aa24.42■■□□□ 1.5
USP39-202ENST00000409025 KCNH5Q8NCM2 988 aa24.42■■□□□ 1.5
USP39-202ENST00000409025 EYA1Q99502 592 aa24.41■■□□□ 1.5
USP39-202ENST00000409025 KDRP35968 1356 aa24.41■■□□□ 1.5
USP39-202ENST00000409025 LTN1O94822 1766 aa24.41■■□□□ 1.5
USP39-202ENST00000409025 NFAT5O94916 1531 aa24.4■■□□□ 1.5
USP39-202ENST00000409025 LMTK3Q96Q04 1460 aa24.4■■□□□ 1.5
USP39-202ENST00000409025 ZNF853P0CG23 659 aa24.4■■□□□ 1.5
USP39-202ENST00000409025 SMC4Q9NTJ3 1288 aa24.4■■□□□ 1.5
USP39-202ENST00000409025 PANK1Q8TE04 598 aa24.39■■□□□ 1.5
USP39-202ENST00000409025 KRT28Q7Z3Y7 464 aa24.39■■□□□ 1.49
USP39-202ENST00000409025 CFAP44Q96MT7 982 aa24.39■■□□□ 1.49
USP39-202ENST00000409025 FAM83GA6ND36 823 aa24.38■■□□□ 1.49
USP39-202ENST00000409025 XPCQ01831 940 aaPredicted RBP24.38■■□□□ 1.49
USP39-202ENST00000409025 MST1RQ04912 1400 aa24.38■■□□□ 1.49
USP39-202ENST00000409025 TRPM3Q9HCF6 1732 aaPredicted RBP24.37■■□□□ 1.49
USP39-202ENST00000409025 ZKSCAN2Q63HK3 967 aa24.37■■□□□ 1.49
USP39-202ENST00000409025 SSH1Q8WYL5 1049 aa24.37■■□□□ 1.49
USP39-202ENST00000409025 ZNF428Q96B54 188 aa24.37■■□□□ 1.49
USP39-202ENST00000409025 MS4A1P11836 297 aa24.37■■□□□ 1.49
USP39-202ENST00000409025 IP6K1Q92551 441 aa24.37■■□□□ 1.49
USP39-202ENST00000409025 COG6Q9Y2V7 657 aa24.37■■□□□ 1.49
USP39-202ENST00000409025 MBIPQ9NS73 344 aa24.36■■□□□ 1.49
USP39-202ENST00000409025 RBM19Q9Y4C8 960 aaKnown RBP24.36■■□□□ 1.49
USP39-202ENST00000409025 DCTN1Q14203 1278 aa24.35■■□□□ 1.49
USP39-202ENST00000409025 ALDH1L2Q3SY69 923 aa24.35■■□□□ 1.49
USP39-202ENST00000409025 CADPS2Q86UW7 1296 aa24.35■■□□□ 1.49
USP39-202ENST00000409025 STRCQ7RTU9 1775 aa24.34■■□□□ 1.49
USP39-202ENST00000409025 AAMPQ13685 434 aa24.34■■□□□ 1.49
USP39-202ENST00000409025 CENPQQ7L2Z9 268 aaPredicted RBP24.34■■□□□ 1.49
USP39-202ENST00000409025 SLIT3O75094 1523 aa24.34■■□□□ 1.49
USP39-202ENST00000409025 LMOD2Q6P5Q4 547 aa24.33■■□□□ 1.49
USP39-202ENST00000409025 LTV1Q96GA3 475 aaPredicted RBP24.33■■□□□ 1.49
USP39-202ENST00000409025 KDM2BQ8NHM5 1336 aa24.33■■□□□ 1.49
USP39-202ENST00000409025 PHRF1Q9P1Y6 1649 aaKnown RBP24.33■■□□□ 1.49
USP39-202ENST00000409025 GAS2L2Q8NHY3 880 aa24.33■■□□□ 1.49
USP39-202ENST00000409025 MSH6P52701 1360 aa24.33■■□□□ 1.48
USP39-202ENST00000409025 MTHFSDQ2M296 383 aaKnown RBP24.32■■□□□ 1.48
USP39-202ENST00000409025 KIF16BQ96L93 1317 aa24.31■■□□□ 1.48
USP39-202ENST00000409025 GCP02774 474 aa24.31■■□□□ 1.48
USP39-202ENST00000409025 RLBP1P12271 317 aa24.31■■□□□ 1.48
USP39-202ENST00000409025 TNNQ9UQP3 1299 aa24.31■■□□□ 1.48
USP39-202ENST00000409025 FTSJ3Q8IY81 847 aaKnown RBP24.31■■□□□ 1.48
USP39-202ENST00000409025 DZIP1LQ8IYY4 767 aaKnown RBP24.31■■□□□ 1.48
USP39-202ENST00000409025 CLUAP1Q96AJ1 413 aa24.31■■□□□ 1.48
USP39-202ENST00000409025 USP19O94966 1318 aa24.3■■□□□ 1.48
USP39-202ENST00000409025 VAMP4O75379 141 aa24.3■■□□□ 1.48
USP39-202ENST00000409025 ZBTB7CA1YPR0 619 aa24.29■■□□□ 1.48
USP39-202ENST00000409025 IPO8O15397 1037 aaKnown RBP24.29■■□□□ 1.48
USP39-202ENST00000409025 MCM10Q7L590 875 aa24.29■■□□□ 1.48
USP39-202ENST00000409025 RTF1Q92541 710 aaKnown RBP24.29■■□□□ 1.48
USP39-202ENST00000409025 NOB1Q9ULX3 412 aaKnown RBP24.29■■□□□ 1.48
USP39-202ENST00000409025 BRPF1P55201 1214 aaPredicted RBP24.28■■□□□ 1.48
USP39-202ENST00000409025 ATF7IPQ6VMQ6 1270 aa24.28■■□□□ 1.48
USP39-202ENST00000409025 ALS2Q96Q42 1657 aa24.28■■□□□ 1.48
USP39-202ENST00000409025 TCERG1O14776 1098 aaKnown RBP24.27■■□□□ 1.48
USP39-202ENST00000409025 ARHGEF25Q86VW2 580 aa24.27■■□□□ 1.48
USP39-202ENST00000409025 TRIM27P14373 513 aa24.27■■□□□ 1.48
USP39-202ENST00000409025 MVPQ14764 893 aaKnown RBP24.27■■□□□ 1.48
USP39-202ENST00000409025 TWISTNBQ3B726 338 aaPredicted RBP24.27■■□□□ 1.48
USP39-202ENST00000409025 TSPYL6Q8N831 410 aa24.27■■□□□ 1.48
USP39-202ENST00000409025 XIRP1Q702N8 1843 aaKnown RBP24.27■■□□□ 1.48
USP39-202ENST00000409025 CHL1O00533 1208 aa24.26■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms