RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 C10orf67Q8IYJ2 551 aa11.1□□□□□ -0.63
COL28A1-201ENST00000399429 STK31Q9BXU1 1019 aa11.1□□□□□ -0.63
COL28A1-201ENST00000399429 ROCK1Q13464 1354 aa11.1□□□□□ -0.63
COL28A1-201ENST00000399429 HDGFL2Q7Z4V5 671 aaPredicted RBP11.09□□□□□ -0.63
COL28A1-201ENST00000399429 ZBTB9Q96C00 473 aa11.09□□□□□ -0.63
COL28A1-201ENST00000399429 GABPB1Q06547 395 aaPredicted RBP11.09□□□□□ -0.63
COL28A1-201ENST00000399429 BMS1Q14692 1282 aaKnown RBP11.09□□□□□ -0.63
COL28A1-201ENST00000399429 PAXBP1Q9Y5B6 917 aa11.09□□□□□ -0.63
COL28A1-201ENST00000399429 GTF3C6Q969F1 213 aa11.09□□□□□ -0.63
COL28A1-201ENST00000399429 ZKSCAN1P17029 563 aaPredicted RBP11.09□□□□□ -0.63
COL28A1-201ENST00000399429 GPT2Q8TD30 523 aa11.09□□□□□ -0.63
COL28A1-201ENST00000399429 ABCC5O15440 1437 aa11.09□□□□□ -0.63
COL28A1-201ENST00000399429 SDF4Q9BRK5 362 aa11.08□□□□□ -0.64
COL28A1-201ENST00000399429 KRT85P78386 507 aa11.08□□□□□ -0.64
COL28A1-201ENST00000399429 CNPY2Q9Y2B0 182 aa11.08□□□□□ -0.64
COL28A1-201ENST00000399429 EFCAB5A4FU69 1503 aa11.08□□□□□ -0.64
COL28A1-201ENST00000399429 ZMYM4Q5VZL5 1548 aa11.08□□□□□ -0.64
COL28A1-201ENST00000399429 KDM4AO75164 1064 aa11.08□□□□□ -0.64
COL28A1-201ENST00000399429 CCDC73Q6ZRK6 1079 aa11.08□□□□□ -0.64
COL28A1-201ENST00000399429 TMPOP42166 694 aaKnown RBP11.07□□□□□ -0.64
COL28A1-201ENST00000399429 TWISTNBQ3B726 338 aaPredicted RBP11.07□□□□□ -0.64
COL28A1-201ENST00000399429 GTF2E1P29083 439 aaPredicted RBP11.07□□□□□ -0.64
COL28A1-201ENST00000399429 GNAI1P63096 354 aa11.07□□□□□ -0.64
COL28A1-201ENST00000399429 CREBRFQ8IUR6 639 aa11.07□□□□□ -0.64
COL28A1-201ENST00000399429 NECTIN2Q92692 538 aa11.07□□□□□ -0.64
COL28A1-201ENST00000399429 TERF2IPQ9NYB0 399 aa11.07□□□□□ -0.64
COL28A1-201ENST00000399429 GPRASP1Q5JY77 1395 aa11.07□□□□□ -0.64
COL28A1-201ENST00000399429 MX1P20591 662 aa11.07□□□□□ -0.64
COL28A1-201ENST00000399429 MAP4K4O95819 1239 aaPredicted RBP11.06□□□□□ -0.64
COL28A1-201ENST00000399429 LMAN1P49257 510 aa11.06□□□□□ -0.64
COL28A1-201ENST00000399429 LARP1BQ659C4 914 aaKnown RBP11.06□□□□□ -0.64
COL28A1-201ENST00000399429 C16orf71Q8IYS4 520 aaPredicted RBP11.06□□□□□ -0.64
COL28A1-201ENST00000399429 THUMPD2Q9BTF0 503 aaKnown RBP11.06□□□□□ -0.64
COL28A1-201ENST00000399429 LMOD3Q0VAK6 560 aa11.06□□□□□ -0.64
COL28A1-201ENST00000399429 ZNF397Q8NF99 534 aaPredicted RBP11.06□□□□□ -0.64
COL28A1-201ENST00000399429 TESK2Q96S53 571 aa11.06□□□□□ -0.64
COL28A1-201ENST00000399429 TEX14Q8IWB6 1497 aa11.06□□□□□ -0.64
COL28A1-201ENST00000399429 SMTNL1A8MU46 457 aa11.06□□□□□ -0.64
COL28A1-201ENST00000399429 H0YHG0 523 aa11.06□□□□□ -0.64
COL28A1-201ENST00000399429 BLMP54132 1417 aaPredicted RBP11.06□□□□□ -0.64
COL28A1-201ENST00000399429 PRKAR2BP31323 418 aa11.06□□□□□ -0.64
COL28A1-201ENST00000399429 UBE2HP62256 183 aa11.06□□□□□ -0.64
COL28A1-201ENST00000399429 URI1O94763 535 aaPredicted RBP11.05□□□□□ -0.64
COL28A1-201ENST00000399429 GADD45BO75293 160 aaPredicted RBP11.05□□□□□ -0.64
COL28A1-201ENST00000399429 PDILTQ8N807 584 aa11.05□□□□□ -0.64
COL28A1-201ENST00000399429 RALGAPBQ86X10 1494 aa11.05□□□□□ -0.64
COL28A1-201ENST00000399429 KIF3BO15066 747 aa11.05□□□□□ -0.64
COL28A1-201ENST00000399429 TSHZ3Q63HK5 1081 aa11.05□□□□□ -0.64
COL28A1-201ENST00000399429 DDX54Q8TDD1 881 aaKnown RBP11.05□□□□□ -0.64
COL28A1-201ENST00000399429 SDSP20132 328 aa11.04□□□□□ -0.64
COL28A1-201ENST00000399429 CCDC83Q8IWF9 413 aa11.04□□□□□ -0.64
COL28A1-201ENST00000399429 SPATA32Q96LK8 384 aa11.04□□□□□ -0.64
COL28A1-201ENST00000399429 KINO60870 393 aaKnown RBP11.04□□□□□ -0.64
COL28A1-201ENST00000399429 ZNF165P49910 485 aa11.04□□□□□ -0.64
COL28A1-201ENST00000399429 RNF20Q5VTR2 975 aa11.04□□□□□ -0.64
COL28A1-201ENST00000399429 TMEM132EQ6IEE7 984 aa11.04□□□□□ -0.64
COL28A1-201ENST00000399429 RASSF4Q9H2L5 321 aa11.04□□□□□ -0.64
COL28A1-201ENST00000399429 ZBTB40Q9NUA8 1239 aa11.04□□□□□ -0.64
COL28A1-201ENST00000399429 KANK1Q14678 1352 aa11.04□□□□□ -0.64
COL28A1-201ENST00000399429 TTC22Q5TAA0 569 aa11.04□□□□□ -0.64
COL28A1-201ENST00000399429 CCDC191Q8NCU4 936 aa11.04□□□□□ -0.64
COL28A1-201ENST00000399429 EXOC6BQ9Y2D4 811 aa11.04□□□□□ -0.64
COL28A1-201ENST00000399429 RSPH4AQ5TD94 716 aa11.04□□□□□ -0.64
COL28A1-201ENST00000399429 NAT10Q9H0A0 1025 aaKnown RBP11.04□□□□□ -0.64
COL28A1-201ENST00000399429 STK3Q13188 491 aa11.03□□□□□ -0.64
COL28A1-201ENST00000399429 TTLL5Q6EMB2 1281 aa11.03□□□□□ -0.64
COL28A1-201ENST00000399429 NOC3LQ8WTT2 800 aaKnown RBP11.03□□□□□ -0.64
COL28A1-201ENST00000399429 CDK13Q14004 1512 aaKnown RBP11.03□□□□□ -0.64
COL28A1-201ENST00000399429 STX6O43752 255 aa11.03□□□□□ -0.64
COL28A1-201ENST00000399429 SKILP12757 684 aa11.03□□□□□ -0.64
COL28A1-201ENST00000399429 RUFY2Q8WXA3 655 aa11.03□□□□□ -0.64
COL28A1-201ENST00000399429 TFIP11Q9UBB9 837 aaKnown RBP11.03□□□□□ -0.64
COL28A1-201ENST00000399429 RSPH14Q9UHP6 348 aa11.03□□□□□ -0.64
COL28A1-201ENST00000399429 LUZP1Q86V48 1076 aa11.03□□□□□ -0.64
COL28A1-201ENST00000399429 CABP2Q9NPB3 220 aa11.03□□□□□ -0.64
COL28A1-201ENST00000399429 CCDC102AQ96A19 550 aa11.02□□□□□ -0.64
COL28A1-201ENST00000399429 USP26Q9BXU7 913 aa11.02□□□□□ -0.64
COL28A1-201ENST00000399429 NSFL1CQ9UNZ2 370 aaKnown RBP11.02□□□□□ -0.64
COL28A1-201ENST00000399429 ELF2Q15723 593 aa11.02□□□□□ -0.65
COL28A1-201ENST00000399429 TXLNBQ8N3L3 684 aa11.02□□□□□ -0.65
COL28A1-201ENST00000399429 FAM200AQ8TCP9 573 aa11.02□□□□□ -0.65
COL28A1-201ENST00000399429 GPATCH3Q96I76 525 aa11.02□□□□□ -0.65
COL28A1-201ENST00000399429 LRRFIP2Q9Y608 721 aaKnown RBP11.02□□□□□ -0.65
COL28A1-201ENST00000399429 UNC13AQ9UPW8 1703 aa11.02□□□□□ -0.65
COL28A1-201ENST00000399429 SLU7O95391 586 aaKnown RBP11.02□□□□□ -0.65
COL28A1-201ENST00000399429 PDCP20941 246 aa11.02□□□□□ -0.65
COL28A1-201ENST00000399429 IBSPP21815 317 aaPredicted RBP11.02□□□□□ -0.65
COL28A1-201ENST00000399429 FKBP5Q13451 457 aaPredicted RBP11.02□□□□□ -0.65
COL28A1-201ENST00000399429 KRBA2Q6ZNG9 492 aa11.02□□□□□ -0.65
COL28A1-201ENST00000399429 PYCARDQ9ULZ3 195 aa11.02□□□□□ -0.65
COL28A1-201ENST00000399429 EVC2Q86UK5 1308 aa11.01□□□□□ -0.65
COL28A1-201ENST00000399429 DTNBO60941 627 aa11.01□□□□□ -0.65
COL28A1-201ENST00000399429 PDLIM2Q96JY6 352 aa11.01□□□□□ -0.65
COL28A1-201ENST00000399429 BICRAQ9NZM4 1560 aa11.01□□□□□ -0.65
COL28A1-201ENST00000399429 SNW1Q13573 536 aaKnown RBP11.01□□□□□ -0.65
COL28A1-201ENST00000399429 ANO6Q4KMQ2 910 aa11.01□□□□□ -0.65
COL28A1-201ENST00000399429 GGT6Q6P531 493 aa11.01□□□□□ -0.65
COL28A1-201ENST00000399429 SCAPERQ9BY12 1400 aa11.01□□□□□ -0.65
COL28A1-201ENST00000399429 IBTKQ9P2D0 1353 aaPredicted RBP11.01□□□□□ -0.65
COL28A1-201ENST00000399429 KIF2AO00139 706 aaPredicted RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms