RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 STARD3NLO95772 234 aa8.51□□□□□ -1.05
UPF2-203ENST00000397053 GNAI2P04899 355 aa8.51□□□□□ -1.05
UPF2-203ENST00000397053 CT47B1P0C2W7 299 aaPredicted RBP8.51□□□□□ -1.05
UPF2-203ENST00000397053 ZC3H6P61129 1189 aaKnown RBP8.51□□□□□ -1.05
UPF2-203ENST00000397053 NGLY1Q96IV0 654 aa8.51□□□□□ -1.05
UPF2-203ENST00000397053 C22orf23Q9BZE7 217 aa8.51□□□□□ -1.05
UPF2-203ENST00000397053 TAX1BP1Q86VP1 789 aa8.51□□□□□ -1.05
UPF2-203ENST00000397053 CCDC112Q8NEF3 446 aa8.51□□□□□ -1.05
UPF2-203ENST00000397053 SLC26A8Q96RN1 970 aa8.51□□□□□ -1.05
UPF2-203ENST00000397053 GOLGA6L10A6NI86 522 aa8.51□□□□□ -1.05
UPF2-203ENST00000397053 PPFIBP1Q86W92 1011 aa8.51□□□□□ -1.05
UPF2-203ENST00000397053 CCDC85AQ96PX6 553 aaPredicted RBP8.51□□□□□ -1.05
UPF2-203ENST00000397053 FAM13BQ9NYF5 915 aa8.51□□□□□ -1.05
UPF2-203ENST00000397053 SULT6B1Q6IMI4 303 aa8.5□□□□□ -1.05
UPF2-203ENST00000397053 RNF214Q8ND24 703 aa8.5□□□□□ -1.05
UPF2-203ENST00000397053 IDH1O75874 414 aaKnown RBP8.5□□□□□ -1.05
UPF2-203ENST00000397053 ZNF219Q9P2Y4 722 aaPredicted RBP8.5□□□□□ -1.05
UPF2-203ENST00000397053 SERPINC1P01008 464 aa8.5□□□□□ -1.05
UPF2-203ENST00000397053 SLC4A2P04920 1241 aa8.5□□□□□ -1.05
UPF2-203ENST00000397053 GRM1Q13255 1194 aa8.5□□□□□ -1.05
UPF2-203ENST00000397053 TWISTNBQ3B726 338 aaPredicted RBP8.5□□□□□ -1.05
UPF2-203ENST00000397053 PIBF1Q8WXW3 757 aa8.5□□□□□ -1.05
UPF2-203ENST00000397053 DRC1Q96MC2 740 aa8.5□□□□□ -1.05
UPF2-203ENST00000397053 CADPSQ9ULU8 1353 aa8.5□□□□□ -1.05
UPF2-203ENST00000397053 PPP1R12BO60237 982 aaPredicted RBP8.5□□□□□ -1.05
UPF2-203ENST00000397053 ADAMTS2O95450 1211 aa8.5□□□□□ -1.05
UPF2-203ENST00000397053 ANAPC15P60006 121 aa8.5□□□□□ -1.05
UPF2-203ENST00000397053 FIBPO43427 364 aa8.49□□□□□ -1.05
UPF2-203ENST00000397053 DACH1Q9UI36 760 aa8.49□□□□□ -1.05
UPF2-203ENST00000397053 POLR3DP05423 398 aaPredicted RBP8.49□□□□□ -1.05
UPF2-203ENST00000397053 ME1P48163 572 aa8.49□□□□□ -1.05
UPF2-203ENST00000397053 ZNF692Q9BU19 519 aaPredicted RBP8.49□□□□□ -1.05
UPF2-203ENST00000397053 CTNNA3Q9UI47 895 aa8.49□□□□□ -1.05
UPF2-203ENST00000397053 XPCQ01831 940 aaPredicted RBP8.49□□□□□ -1.05
UPF2-203ENST00000397053 PLCD4Q9BRC7 762 aa8.49□□□□□ -1.05
UPF2-203ENST00000397053 PTCD1O75127 700 aaKnown RBP8.49□□□□□ -1.05
UPF2-203ENST00000397053 CDKL5O76039 1030 aa8.49□□□□□ -1.05
UPF2-203ENST00000397053 PRAM1Q96QH2 718 aa8.49□□□□□ -1.05
UPF2-203ENST00000397053 CYP46A1Q9Y6A2 500 aa8.49□□□□□ -1.05
UPF2-203ENST00000397053 CCP110O43303 1012 aa8.48□□□□□ -1.05
UPF2-203ENST00000397053 MCM2P49736 904 aa8.48□□□□□ -1.05
UPF2-203ENST00000397053 AAMPQ13685 434 aa8.48□□□□□ -1.05
UPF2-203ENST00000397053 TCP11L2Q8N4U5 519 aa8.48□□□□□ -1.05
UPF2-203ENST00000397053 PANK1Q8TE04 598 aa8.48□□□□□ -1.05
UPF2-203ENST00000397053 KIF7Q2M1P5 1343 aa8.48□□□□□ -1.05
UPF2-203ENST00000397053 HMGN5P82970 282 aaKnown RBP8.48□□□□□ -1.05
UPF2-203ENST00000397053 STK3Q13188 491 aa8.48□□□□□ -1.05
UPF2-203ENST00000397053 GSE1Q14687 1217 aa8.48□□□□□ -1.05
UPF2-203ENST00000397053 FEZ1Q99689 392 aa8.48□□□□□ -1.05
UPF2-203ENST00000397053 MKNK2Q9HBH9 465 aa8.48□□□□□ -1.05
UPF2-203ENST00000397053 ANKIB1Q9P2G1 1089 aa8.48□□□□□ -1.05
UPF2-203ENST00000397053 RAPGEF2Q9Y4G8 1499 aa8.48□□□□□ -1.05
UPF2-203ENST00000397053 CAVIN4Q5BKX8 364 aa8.48□□□□□ -1.05
UPF2-203ENST00000397053 AFAP1Q8N556 730 aa8.48□□□□□ -1.05
UPF2-203ENST00000397053 COMMD10Q9Y6G5 202 aa8.48□□□□□ -1.05
UPF2-203ENST00000397053 ANKRD1Q15327 319 aa8.48□□□□□ -1.05
UPF2-203ENST00000397053 AIDAQ96BJ3 306 aa8.48□□□□□ -1.05
UPF2-203ENST00000397053 CDK19Q9BWU1 502 aa8.48□□□□□ -1.05
UPF2-203ENST00000397053 GOLGA6L7A0A1B0GV03 622 aa8.47□□□□□ -1.05
UPF2-203ENST00000397053 MBD3O95983 291 aa8.47□□□□□ -1.05
UPF2-203ENST00000397053 SPINK5Q9NQ38 1064 aaPredicted RBP8.47□□□□□ -1.05
UPF2-203ENST00000397053 SEC63Q9UGP8 760 aaKnown RBP8.47□□□□□ -1.05
UPF2-203ENST00000397053 IFIT1P09914 478 aaKnown RBP8.47□□□□□ -1.05
UPF2-203ENST00000397053 GBP2P32456 591 aaPredicted RBP8.47□□□□□ -1.05
UPF2-203ENST00000397053 GRIPAP1Q4V328 841 aa8.47□□□□□ -1.05
UPF2-203ENST00000397053 CFAP70Q5T0N1 1121 aa8.47□□□□□ -1.05
UPF2-203ENST00000397053 CENPHQ9H3R5 247 aa8.47□□□□□ -1.05
UPF2-203ENST00000397053 CA8P35219 290 aa8.47□□□□□ -1.05
UPF2-203ENST00000397053 METTL24Q5JXM2 366 aa8.47□□□□□ -1.05
UPF2-203ENST00000397053 ATF7IPQ6VMQ6 1270 aa8.47□□□□□ -1.05
UPF2-203ENST00000397053 C6orf229H3BNL8 230 aa8.46□□□□□ -1.05
UPF2-203ENST00000397053 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.46□□□□□ -1.05
UPF2-203ENST00000397053 LETM1O95202 739 aaPredicted RBP8.46□□□□□ -1.05
UPF2-203ENST00000397053 CCT4P50991 539 aaKnown RBP8.46□□□□□ -1.05
UPF2-203ENST00000397053 RABEP1Q15276 862 aa8.46□□□□□ -1.05
UPF2-203ENST00000397053 CCDC96Q2M329 555 aa8.46□□□□□ -1.05
UPF2-203ENST00000397053 DZIP1Q86YF9 867 aaKnown RBP8.46□□□□□ -1.05
UPF2-203ENST00000397053 EPB41L2O43491 1005 aaKnown RBP8.46□□□□□ -1.06
UPF2-203ENST00000397053 BLOC1S2Q6QNY1 142 aa8.46□□□□□ -1.06
UPF2-203ENST00000397053 RPGRQ92834 1020 aaKnown RBP8.46□□□□□ -1.06
UPF2-203ENST00000397053 TMOD3Q9NYL9 352 aa8.46□□□□□ -1.06
UPF2-203ENST00000397053 EIF5P55010 431 aaKnown RBP8.46□□□□□ -1.06
UPF2-203ENST00000397053 EXOSC9Q06265 439 aaKnown RBP8.46□□□□□ -1.06
UPF2-203ENST00000397053 AACSQ86V21 672 aa8.46□□□□□ -1.06
UPF2-203ENST00000397053 TAF4BQ92750 862 aa8.46□□□□□ -1.06
UPF2-203ENST00000397053 FAM43AQ8N2R8 423 aa8.45□□□□□ -1.06
UPF2-203ENST00000397053 LRRFIP2Q9Y608 721 aaKnown RBP8.45□□□□□ -1.06
UPF2-203ENST00000397053 SRGAP3O43295 1099 aa8.45□□□□□ -1.06
UPF2-203ENST00000397053 CUL5Q93034 780 aa8.45□□□□□ -1.06
UPF2-203ENST00000397053 WASF1Q92558 559 aa8.45□□□□□ -1.06
UPF2-203ENST00000397053 VTI1AQ96AJ9 217 aa8.45□□□□□ -1.06
UPF2-203ENST00000397053 LRRCC1Q9C099 1032 aa8.45□□□□□ -1.06
UPF2-203ENST00000397053 ZBED9Q6R2W3 1325 aa8.45□□□□□ -1.06
UPF2-203ENST00000397053 BTBD11A6QL63 1104 aa8.45□□□□□ -1.06
UPF2-203ENST00000397053 MINDY4BA8MYZ0 360 aa8.45□□□□□ -1.06
UPF2-203ENST00000397053 MAP3K9P80192 1104 aa8.45□□□□□ -1.06
UPF2-203ENST00000397053 CLEC11AQ9Y240 323 aa8.45□□□□□ -1.06
UPF2-203ENST00000397053 JAKMIP3Q5VZ66 844 aa8.44□□□□□ -1.06
UPF2-203ENST00000397053 UBA5Q9GZZ9 404 aa8.44□□□□□ -1.06
UPF2-203ENST00000397053 CABP1Q9NZU7 370 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms