RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 GBP4Q96PP9 640 aa12.49□□□□□ -0.41
COL17A1-203ENST00000393211 CDK12Q9NYV4 1490 aaPredicted RBP12.49□□□□□ -0.41
COL17A1-203ENST00000393211 AATKQ6ZMQ8 1374 aa12.48□□□□□ -0.41
COL17A1-203ENST00000393211 ZNF853P0CG23 659 aa12.48□□□□□ -0.41
COL17A1-203ENST00000393211 POLKQ9UBT6 870 aa12.48□□□□□ -0.41
COL17A1-203ENST00000393211 PPP6R1Q9UPN7 881 aa12.48□□□□□ -0.41
COL17A1-203ENST00000393211 ABCC4O15439 1325 aa12.48□□□□□ -0.41
COL17A1-203ENST00000393211 PRKAR2BP31323 418 aa12.48□□□□□ -0.41
COL17A1-203ENST00000393211 API5Q9BZZ5 524 aaKnown RBP12.48□□□□□ -0.41
COL17A1-203ENST00000393211 LNPKQ9C0E8 428 aa12.48□□□□□ -0.41
COL17A1-203ENST00000393211 EDC4Q6P2E9 1401 aaKnown RBP12.47□□□□□ -0.41
COL17A1-203ENST00000393211 RAPGEF3O95398 923 aa12.47□□□□□ -0.41
COL17A1-203ENST00000393211 HSP90AB1P08238 724 aaKnown RBP12.47□□□□□ -0.41
COL17A1-203ENST00000393211 RAB3GAP1Q15042 981 aa12.47□□□□□ -0.41
COL17A1-203ENST00000393211 CLEC17AQ6ZS10 378 aa12.47□□□□□ -0.41
COL17A1-203ENST00000393211 SPRYD3Q8NCJ5 442 aa12.47□□□□□ -0.41
COL17A1-203ENST00000393211 CABP1Q9NZU7 370 aa12.47□□□□□ -0.41
COL17A1-203ENST00000393211 MAP2P11137 1827 aaKnown RBP12.47□□□□□ -0.41
COL17A1-203ENST00000393211 YEATS2Q9ULM3 1422 aa12.46□□□□□ -0.41
COL17A1-203ENST00000393211 CLCN1P35523 988 aa12.46□□□□□ -0.41
COL17A1-203ENST00000393211 HAP1P54257 671 aaPredicted RBP12.46□□□□□ -0.41
COL17A1-203ENST00000393211 CPSF1Q10570 1443 aaKnown RBP12.45□□□□□ -0.42
COL17A1-203ENST00000393211 ANKRD45Q5TZF3 282 aa12.45□□□□□ -0.42
COL17A1-203ENST00000393211 CYB5RLQ6IPT4 315 aa12.45□□□□□ -0.42
COL17A1-203ENST00000393211 KIF2CQ99661 725 aa12.45□□□□□ -0.42
COL17A1-203ENST00000393211 RRAGDQ9NQL2 400 aaPredicted RBP12.45□□□□□ -0.42
COL17A1-203ENST00000393211 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.45□□□□□ -0.42
COL17A1-203ENST00000393211 K7ELQ4 463 aaPredicted RBP12.44□□□□□ -0.42
COL17A1-203ENST00000393211 CDC45O75419 566 aa12.44□□□□□ -0.42
COL17A1-203ENST00000393211 IL13P35225 146 aa12.44□□□□□ -0.42
COL17A1-203ENST00000393211 TNPO1Q92973 898 aaKnown RBP12.44□□□□□ -0.42
COL17A1-203ENST00000393211 GRPEL1Q9HAV7 217 aa12.44□□□□□ -0.42
COL17A1-203ENST00000393211 SETD1AO15047 1707 aaKnown RBP12.44□□□□□ -0.42
COL17A1-203ENST00000393211 TBC1D9Q6ZT07 1266 aa12.43□□□□□ -0.42
COL17A1-203ENST00000393211 IBTKQ9P2D0 1353 aaPredicted RBP12.43□□□□□ -0.42
COL17A1-203ENST00000393211 AGLP35573 1532 aa12.42□□□□□ -0.42
COL17A1-203ENST00000393211 GOLGA6L22H0YM25 854 aa12.42□□□□□ -0.42
COL17A1-203ENST00000393211 TWISTNBQ3B726 338 aaPredicted RBP12.42□□□□□ -0.42
COL17A1-203ENST00000393211 SIRT1Q96EB6 747 aa12.42□□□□□ -0.42
COL17A1-203ENST00000393211 GZF1Q9H116 711 aaPredicted RBP12.42□□□□□ -0.42
COL17A1-203ENST00000393211 MBIPQ9NS73 344 aa12.42□□□□□ -0.42
COL17A1-203ENST00000393211 SIRT2Q8IXJ6 389 aa12.41□□□□□ -0.42
COL17A1-203ENST00000393211 PHACTR3Q96KR7 559 aa12.41□□□□□ -0.42
COL17A1-203ENST00000393211 MON2Q7Z3U7 1717 aa12.41□□□□□ -0.42
COL17A1-203ENST00000393211 DLG5Q8TDM6 1919 aa12.41□□□□□ -0.42
COL17A1-203ENST00000393211 A2ML1A8K2U0 1454 aa12.4□□□□□ -0.42
COL17A1-203ENST00000393211 HSP90AA1P07900 732 aaKnown RBP12.4□□□□□ -0.42
COL17A1-203ENST00000393211 PRKCSHP14314 528 aaPredicted RBP12.4□□□□□ -0.42
COL17A1-203ENST00000393211 RABEP1Q15276 862 aa12.4□□□□□ -0.42
COL17A1-203ENST00000393211 INTS3Q68E01 1043 aaKnown RBP12.4□□□□□ -0.42
COL17A1-203ENST00000393211 SPATA31D1Q6ZQQ2 1576 aa12.4□□□□□ -0.42
COL17A1-203ENST00000393211 DCTPP1Q9H773 170 aa12.4□□□□□ -0.42
COL17A1-203ENST00000393211 KNDC1Q76NI1 1749 aa12.4□□□□□ -0.42
COL17A1-203ENST00000393211 RIMS2Q9UQ26 1411 aa12.4□□□□□ -0.42
COL17A1-203ENST00000393211 RPAP2Q8IXW5 612 aaPredicted RBP12.4□□□□□ -0.42
COL17A1-203ENST00000393211 TSPYL6Q8N831 410 aa12.4□□□□□ -0.42
COL17A1-203ENST00000393211 NRKQ7Z2Y5 1582 aa12.39□□□□□ -0.43
COL17A1-203ENST00000393211 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.39□□□□□ -0.43
COL17A1-203ENST00000393211 PANK2Q9BZ23 570 aa12.39□□□□□ -0.43
COL17A1-203ENST00000393211 STAG3Q9UJ98 1225 aa12.39□□□□□ -0.43
COL17A1-203ENST00000393211 AKAP12Q02952 1782 aa12.39□□□□□ -0.43
COL17A1-203ENST00000393211 KIAA0232Q92628 1395 aa12.38□□□□□ -0.43
COL17A1-203ENST00000393211 WASLO00401 505 aaPredicted RBP12.38□□□□□ -0.43
COL17A1-203ENST00000393211 PLEKHM2Q8IWE5 1019 aa12.38□□□□□ -0.43
COL17A1-203ENST00000393211 C3P01024 1663 aa12.37□□□□□ -0.43
COL17A1-203ENST00000393211 HMOX1P09601 288 aa12.37□□□□□ -0.43
COL17A1-203ENST00000393211 NUCB2P80303 420 aa12.37□□□□□ -0.43
COL17A1-203ENST00000393211 TTC22Q5TAA0 569 aa12.37□□□□□ -0.43
COL17A1-203ENST00000393211 ANKRD44Q8N8A2 993 aa12.37□□□□□ -0.43
COL17A1-203ENST00000393211 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.37□□□□□ -0.43
COL17A1-203ENST00000393211 COG3Q96JB2 828 aa12.37□□□□□ -0.43
COL17A1-203ENST00000393211 PTPRCP08575 1304 aa12.37□□□□□ -0.43
COL17A1-203ENST00000393211 KLHL40Q2TBA0 621 aa12.37□□□□□ -0.43
COL17A1-203ENST00000393211 C8orf58Q8NAV2 365 aa12.37□□□□□ -0.43
COL17A1-203ENST00000393211 CWC22Q9HCG8 908 aaKnown RBP12.37□□□□□ -0.43
COL17A1-203ENST00000393211 EMILIN1Q9Y6C2 1016 aa12.37□□□□□ -0.43
COL17A1-203ENST00000393211 TECPR2O15040 1411 aa12.36□□□□□ -0.43
COL17A1-203ENST00000393211 ITSN1Q15811 1721 aa12.36□□□□□ -0.43
COL17A1-203ENST00000393211 ESPNB1AK53 854 aa12.36□□□□□ -0.43
COL17A1-203ENST00000393211 FBXO31Q5XUX0 539 aaPredicted RBP12.36□□□□□ -0.43
COL17A1-203ENST00000393211 CASC1Q6TDU7 716 aa12.36□□□□□ -0.43
COL17A1-203ENST00000393211 C1orf115Q9H7X2 142 aa12.36□□□□□ -0.43
COL17A1-203ENST00000393211 GSPT1P15170 499 aaKnown RBP12.35□□□□□ -0.43
COL17A1-203ENST00000393211 GAS2L2Q8NHY3 880 aa12.35□□□□□ -0.43
COL17A1-203ENST00000393211 UBE2Q2Q8WVN8 375 aa12.35□□□□□ -0.43
COL17A1-203ENST00000393211 TRIM44Q96DX7 344 aaPredicted RBP12.35□□□□□ -0.43
COL17A1-203ENST00000393211 THUMPD2Q9BTF0 503 aaKnown RBP12.35□□□□□ -0.43
COL17A1-203ENST00000393211 USP26Q9BXU7 913 aa12.35□□□□□ -0.43
COL17A1-203ENST00000393211 NRXN3Q9Y4C0 1643 aa12.34□□□□□ -0.43
COL17A1-203ENST00000393211 CD2BP2O95400 341 aaKnown RBP12.34□□□□□ -0.43
COL17A1-203ENST00000393211 CCDC173Q0VFZ6 552 aa12.34□□□□□ -0.43
COL17A1-203ENST00000393211 WAPLQ7Z5K2 1190 aa12.34□□□□□ -0.43
COL17A1-203ENST00000393211 PPP1R9BQ96SB3 815 aa12.34□□□□□ -0.43
COL17A1-203ENST00000393211 CCDC61Q9Y6R9 512 aa12.34□□□□□ -0.43
COL17A1-203ENST00000393211 ATP10DQ9P241 1426 aa12.34□□□□□ -0.43
COL17A1-203ENST00000393211 CPS1P31327 1500 aa12.34□□□□□ -0.43
COL17A1-203ENST00000393211 CHL1O00533 1208 aa12.33□□□□□ -0.43
COL17A1-203ENST00000393211 BAG4O95429 457 aaKnown RBP12.33□□□□□ -0.43
COL17A1-203ENST00000393211 NME9Q86XW9 330 aa12.33□□□□□ -0.43
COL17A1-203ENST00000393211 RGS12O14924 1447 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms