RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 USP5P45974 858 aa16.25■□□□□ 0.19
COL4A1-201ENST00000375820 TOM1L2Q6ZVM7 507 aa16.24■□□□□ 0.19
COL4A1-201ENST00000375820 IL1RAPL2Q9NP60 686 aa16.24■□□□□ 0.19
COL4A1-201ENST00000375820 PPP2R1AP30153 589 aa16.24■□□□□ 0.19
COL4A1-201ENST00000375820 AACSQ86V21 672 aa16.24■□□□□ 0.19
COL4A1-201ENST00000375820 TAF3Q5VWG9 929 aa16.24■□□□□ 0.19
COL4A1-201ENST00000375820 SSR1P43307 286 aaKnown RBP16.24■□□□□ 0.19
COL4A1-201ENST00000375820 GAS2L2Q8NHY3 880 aa16.24■□□□□ 0.19
COL4A1-201ENST00000375820 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.24■□□□□ 0.19
COL4A1-201ENST00000375820 LRRCC1Q9C099 1032 aa16.23■□□□□ 0.19
COL4A1-201ENST00000375820 GOLGA6L10A6NI86 522 aa16.23■□□□□ 0.19
COL4A1-201ENST00000375820 CAMK4Q16566 473 aa16.23■□□□□ 0.19
COL4A1-201ENST00000375820 DDX11Q96FC9 970 aa16.23■□□□□ 0.19
COL4A1-201ENST00000375820 GNL3LQ9NVN8 582 aaKnown RBP16.23■□□□□ 0.19
COL4A1-201ENST00000375820 LRRFIP2Q9Y608 721 aaKnown RBP16.23■□□□□ 0.19
COL4A1-201ENST00000375820 GPRASP1Q5JY77 1395 aa16.23■□□□□ 0.19
COL4A1-201ENST00000375820 LARP1BQ659C4 914 aaKnown RBP16.23■□□□□ 0.19
COL4A1-201ENST00000375820 ERICH4A6NGS2 130 aa16.22■□□□□ 0.19
COL4A1-201ENST00000375820 AKNAQ7Z591 1439 aa16.22■□□□□ 0.19
COL4A1-201ENST00000375820 ERLIN2O94905 339 aa16.22■□□□□ 0.19
COL4A1-201ENST00000375820 MBD3O95983 291 aa16.22■□□□□ 0.19
COL4A1-201ENST00000375820 SOGA3Q5TF21 947 aa16.22■□□□□ 0.19
COL4A1-201ENST00000375820 PROSER2Q86WR7 435 aaPredicted RBP16.22■□□□□ 0.19
COL4A1-201ENST00000375820 TRIM22Q8IYM9 498 aa16.22■□□□□ 0.19
COL4A1-201ENST00000375820 MPHOSPH8Q99549 860 aa16.22■□□□□ 0.19
COL4A1-201ENST00000375820 C11orf95C9JLR9 678 aaPredicted RBP16.21■□□□□ 0.19
COL4A1-201ENST00000375820 TATP17735 454 aaPredicted RBP16.21■□□□□ 0.19
COL4A1-201ENST00000375820 RABEP1Q15276 862 aa16.21■□□□□ 0.19
COL4A1-201ENST00000375820 MIS18AQ9NYP9 233 aa16.21■□□□□ 0.19
COL4A1-201ENST00000375820 HIP1O00291 1037 aa16.21■□□□□ 0.19
COL4A1-201ENST00000375820 PIP4K2BP78356 416 aa16.21■□□□□ 0.19
COL4A1-201ENST00000375820 CCDC192P0DO97 292 aa16.21■□□□□ 0.19
COL4A1-201ENST00000375820 TDO2P48775 406 aa16.21■□□□□ 0.19
COL4A1-201ENST00000375820 RRS1Q15050 365 aaKnown RBP16.21■□□□□ 0.19
COL4A1-201ENST00000375820 WASHC2AQ641Q2 1341 aa16.21■□□□□ 0.19
COL4A1-201ENST00000375820 MPHOSPH10O00566 681 aaKnown RBP16.21■□□□□ 0.19
COL4A1-201ENST00000375820 JAKMIP1Q96N16 626 aaKnown RBP16.21■□□□□ 0.19
COL4A1-201ENST00000375820 PDCP20941 246 aa16.21■□□□□ 0.18
COL4A1-201ENST00000375820 TMX1Q9H3N1 280 aa16.2■□□□□ 0.18
COL4A1-201ENST00000375820 ERC1Q8IUD2 1116 aa16.2■□□□□ 0.18
COL4A1-201ENST00000375820 FILIP1Q7Z7B0 1213 aa16.2■□□□□ 0.18
COL4A1-201ENST00000375820 NUTM1Q86Y26 1132 aa16.2■□□□□ 0.18
COL4A1-201ENST00000375820 SLC12A5Q9H2X9 1139 aa16.2■□□□□ 0.18
COL4A1-201ENST00000375820 RAI14Q9P0K7 980 aa16.2■□□□□ 0.18
COL4A1-201ENST00000375820 DHX8Q14562 1220 aaKnown RBP16.2■□□□□ 0.18
COL4A1-201ENST00000375820 CCDC57Q2TAC2 916 aa16.2■□□□□ 0.18
COL4A1-201ENST00000375820 CCDC97Q96F63 343 aaPredicted RBP16.19■□□□□ 0.18
COL4A1-201ENST00000375820 ZNF76P36508 570 aa16.19■□□□□ 0.18
COL4A1-201ENST00000375820 NBPF1Q3BBV0 1214 aa16.19■□□□□ 0.18
COL4A1-201ENST00000375820 ZNF530Q6P9A1 599 aaPredicted RBP16.19■□□□□ 0.18
COL4A1-201ENST00000375820 SPATA32Q96LK8 384 aa16.19■□□□□ 0.18
COL4A1-201ENST00000375820 NACAP1Q9BZK3 213 aa16.19■□□□□ 0.18
COL4A1-201ENST00000375820 STIM1Q13586 685 aa16.19■□□□□ 0.18
COL4A1-201ENST00000375820 PDRG1Q9NUG6 133 aa16.19■□□□□ 0.18
COL4A1-201ENST00000375820 UQCRHLA0A096LP55 91 aa16.19■□□□□ 0.18
COL4A1-201ENST00000375820 UQCRHP07919 91 aa16.19■□□□□ 0.18
COL4A1-201ENST00000375820 SMG6Q86US8 1419 aaKnown RBP16.18■□□□□ 0.18
COL4A1-201ENST00000375820 DCAF8L1A6NGE4 600 aa16.18■□□□□ 0.18
COL4A1-201ENST00000375820 CCP110O43303 1012 aa16.18■□□□□ 0.18
COL4A1-201ENST00000375820 CABP1Q9NZU7 370 aa16.18■□□□□ 0.18
COL4A1-201ENST00000375820 CDK19Q9BWU1 502 aa16.18■□□□□ 0.18
COL4A1-201ENST00000375820 K7ELQ4 463 aaPredicted RBP16.18■□□□□ 0.18
COL4A1-201ENST00000375820 SRGAP3O43295 1099 aa16.17■□□□□ 0.18
COL4A1-201ENST00000375820 CCDC112Q8NEF3 446 aa16.17■□□□□ 0.18
COL4A1-201ENST00000375820 IDH1O75874 414 aaKnown RBP16.17■□□□□ 0.18
COL4A1-201ENST00000375820 DNA2P51530 1060 aa16.17■□□□□ 0.18
COL4A1-201ENST00000375820 KIAA0754O94854 1291 aa16.17■□□□□ 0.18
COL4A1-201ENST00000375820 JMYQ8N9B5 988 aa16.17■□□□□ 0.18
COL4A1-201ENST00000375820 GCC1Q96CN9 775 aa16.17■□□□□ 0.18
COL4A1-201ENST00000375820 NEBLO76041 1014 aa16.17■□□□□ 0.18
COL4A1-201ENST00000375820 ZRSR2Q15696 482 aaKnown RBP16.16■□□□□ 0.18
COL4A1-201ENST00000375820 CCDC102AQ96A19 550 aa16.16■□□□□ 0.18
COL4A1-201ENST00000375820 AFAP1Q8N556 730 aa16.16■□□□□ 0.18
COL4A1-201ENST00000375820 SRCIN1Q9C0H9 1055 aa16.16■□□□□ 0.18
COL4A1-201ENST00000375820 KRT85P78386 507 aa16.16■□□□□ 0.18
COL4A1-201ENST00000375820 CCDC66A2RUB6 948 aa16.16■□□□□ 0.18
COL4A1-201ENST00000375820 UBAC1Q9BSL1 405 aa16.16■□□□□ 0.18
COL4A1-201ENST00000375820 LRP2BPQ9P2M1 347 aa16.15■□□□□ 0.18
COL4A1-201ENST00000375820 ABCF2Q9UG63 623 aa16.15■□□□□ 0.18
COL4A1-201ENST00000375820 BTBD11A6QL63 1104 aa16.15■□□□□ 0.18
COL4A1-201ENST00000375820 SKAP1Q86WV1 359 aa16.15■□□□□ 0.18
COL4A1-201ENST00000375820 GRPEL1Q9HAV7 217 aa16.15■□□□□ 0.18
COL4A1-201ENST00000375820 SMARCA5O60264 1052 aaPredicted RBP16.15■□□□□ 0.18
COL4A1-201ENST00000375820 FERMT3Q86UX7 667 aa16.15■□□□□ 0.18
COL4A1-201ENST00000375820 OSCARQ8IYS5 282 aa16.15■□□□□ 0.18
COL4A1-201ENST00000375820 PIP4K2AP48426 406 aaPredicted RBP16.15■□□□□ 0.18
COL4A1-201ENST00000375820 KIAA1328Q86T90 577 aa16.15■□□□□ 0.18
COL4A1-201ENST00000375820 MYCNP04198 464 aaPredicted RBP16.15■□□□□ 0.18
COL4A1-201ENST00000375820 MCM2P49736 904 aa16.15■□□□□ 0.18
COL4A1-201ENST00000375820 SF3B2Q13435 895 aaKnown RBP16.15■□□□□ 0.18
COL4A1-201ENST00000375820 TRMT1LQ7Z2T5 733 aaKnown RBP16.15■□□□□ 0.18
COL4A1-201ENST00000375820 BLOC1S2Q6QNY1 142 aa16.14■□□□□ 0.17
COL4A1-201ENST00000375820 CASTP20810 708 aaKnown RBP16.14■□□□□ 0.17
COL4A1-201ENST00000375820 DACH1Q9UI36 760 aa16.14■□□□□ 0.17
COL4A1-201ENST00000375820 CADPSQ9ULU8 1353 aa16.14■□□□□ 0.17
COL4A1-201ENST00000375820 AEBP1Q8IUX7 1158 aa16.14■□□□□ 0.17
COL4A1-201ENST00000375820 CCDC82Q8N4S0 544 aa16.14■□□□□ 0.17
COL4A1-201ENST00000375820 WDR33Q9C0J8 1336 aaKnown RBP16.14■□□□□ 0.17
COL4A1-201ENST00000375820 EIF5P55010 431 aaKnown RBP16.14■□□□□ 0.17
COL4A1-201ENST00000375820 CHD1LQ86WJ1 897 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms