RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 PTPRMP28827 1452 aa26.32■■□□□ 1.8
UPF3A-202ENST00000375299 SENP3Q9H4L4 574 aaPredicted RBP26.32■■□□□ 1.8
UPF3A-202ENST00000375299 FOXD4L1Q9NU39 408 aa26.32■■□□□ 1.8
UPF3A-202ENST00000375299 FAM135BQ49AJ0 1406 aa26.3■■□□□ 1.8
UPF3A-202ENST00000375299 FCHSD2O94868 740 aa26.29■■□□□ 1.8
UPF3A-202ENST00000375299 GLIPR1L2Q4G1C9 344 aa26.29■■□□□ 1.8
UPF3A-202ENST00000375299 RRP9O43818 475 aaKnown RBP26.29■■□□□ 1.8
UPF3A-202ENST00000375299 ARHGAP45Q92619 1136 aa26.29■■□□□ 1.8
UPF3A-202ENST00000375299 MRPL50Q8N5N7 158 aaKnown RBP26.28■■□□□ 1.8
UPF3A-202ENST00000375299 C1orf115Q9H7X2 142 aa26.28■■□□□ 1.8
UPF3A-202ENST00000375299 SSFA2P28290 1259 aa26.27■■□□□ 1.8
UPF3A-202ENST00000375299 HSP90AA2PQ14568 343 aaPredicted RBP26.27■■□□□ 1.8
UPF3A-202ENST00000375299 CLEC17AQ6ZS10 378 aa26.27■■□□□ 1.8
UPF3A-202ENST00000375299 RBM42Q9BTD8 480 aaKnown RBP26.27■■□□□ 1.8
UPF3A-202ENST00000375299 GOLGA6L22H0YM25 854 aa26.27■■□□□ 1.8
UPF3A-202ENST00000375299 GAS2L2Q8NHY3 880 aa26.27■■□□□ 1.8
UPF3A-202ENST00000375299 PRAM1Q96QH2 718 aa26.26■■□□□ 1.79
UPF3A-202ENST00000375299 YTHDC2Q9H6S0 1430 aaKnown RBP26.26■■□□□ 1.79
UPF3A-202ENST00000375299 MINK1Q8N4C8 1332 aaPredicted RBP26.25■■□□□ 1.79
UPF3A-202ENST00000375299 VAMP4O75379 141 aa26.25■■□□□ 1.79
UPF3A-202ENST00000375299 CDC45O75419 566 aa26.25■■□□□ 1.79
UPF3A-202ENST00000375299 PRKAR2BP31323 418 aa26.25■■□□□ 1.79
UPF3A-202ENST00000375299 CCDC173Q0VFZ6 552 aa26.25■■□□□ 1.79
UPF3A-202ENST00000375299 IBTKQ9P2D0 1353 aaPredicted RBP26.25■■□□□ 1.79
UPF3A-202ENST00000375299 SIRT2Q8IXJ6 389 aa26.24■■□□□ 1.79
UPF3A-202ENST00000375299 ABCC4O15439 1325 aa26.24■■□□□ 1.79
UPF3A-202ENST00000375299 HDGFL2Q7Z4V5 671 aaPredicted RBP26.23■■□□□ 1.79
UPF3A-202ENST00000375299 KLHL40Q2TBA0 621 aa26.22■■□□□ 1.79
UPF3A-202ENST00000375299 PPP1R9BQ96SB3 815 aa26.22■■□□□ 1.79
UPF3A-202ENST00000375299 FBXO31Q5XUX0 539 aaPredicted RBP26.21■■□□□ 1.79
UPF3A-202ENST00000375299 BAG4O95429 457 aaKnown RBP26.21■■□□□ 1.79
UPF3A-202ENST00000375299 NASPP49321 788 aaPredicted RBP26.2■■□□□ 1.79
UPF3A-202ENST00000375299 CALD1Q05682 793 aaKnown RBP26.2■■□□□ 1.79
UPF3A-202ENST00000375299 NFE2L2Q16236 605 aa26.2■■□□□ 1.79
UPF3A-202ENST00000375299 AK9Q5TCS8 1911 aa26.19■■□□□ 1.78
UPF3A-202ENST00000375299 TSPYL6Q8N831 410 aa26.19■■□□□ 1.78
UPF3A-202ENST00000375299 DDX49Q9Y6V7 483 aaKnown RBP26.19■■□□□ 1.78
UPF3A-202ENST00000375299 ALKQ9UM73 1620 aa26.19■■□□□ 1.78
UPF3A-202ENST00000375299 TPM2P07951 284 aa26.18■■□□□ 1.78
UPF3A-202ENST00000375299 GSPT1P15170 499 aaKnown RBP26.18■■□□□ 1.78
UPF3A-202ENST00000375299 GNAI1P63096 354 aa26.18■■□□□ 1.78
UPF3A-202ENST00000375299 IFT57Q9NWB7 429 aa26.18■■□□□ 1.78
UPF3A-202ENST00000375299 RABEP1Q15276 862 aa26.17■■□□□ 1.78
UPF3A-202ENST00000375299 CFAP44Q96MT7 982 aa26.17■■□□□ 1.78
UPF3A-202ENST00000375299 THUMPD2Q9BTF0 503 aaKnown RBP26.17■■□□□ 1.78
UPF3A-202ENST00000375299 KNDC1Q76NI1 1749 aa26.16■■□□□ 1.78
UPF3A-202ENST00000375299 ANP32BQ92688 251 aaKnown RBP26.16■■□□□ 1.78
UPF3A-202ENST00000375299 PHACTR3Q96KR7 559 aa26.15■■□□□ 1.78
UPF3A-202ENST00000375299 CDK19Q9BWU1 502 aa26.15■■□□□ 1.78
UPF3A-202ENST00000375299 ARHGEF40Q8TER5 1519 aa26.15■■□□□ 1.78
UPF3A-202ENST00000375299 MAP2P11137 1827 aaKnown RBP26.15■■□□□ 1.78
UPF3A-202ENST00000375299 POLKQ9UBT6 870 aa26.14■■□□□ 1.78
UPF3A-202ENST00000375299 ZSCAN30Q86W11 494 aa26.14■■□□□ 1.77
UPF3A-202ENST00000375299 PLEKHM2Q8IWE5 1019 aa26.14■■□□□ 1.77
UPF3A-202ENST00000375299 MBIPQ9NS73 344 aa26.14■■□□□ 1.77
UPF3A-202ENST00000375299 ZNF853P0CG23 659 aa26.13■■□□□ 1.77
UPF3A-202ENST00000375299 API5Q9BZZ5 524 aaKnown RBP26.13■■□□□ 1.77
UPF3A-202ENST00000375299 NUCB2P80303 420 aa26.13■■□□□ 1.77
UPF3A-202ENST00000375299 HMOX1P09601 288 aa26.12■■□□□ 1.77
UPF3A-202ENST00000375299 ZNF445P59923 1031 aa26.12■■□□□ 1.77
UPF3A-202ENST00000375299 CABP1Q9NZU7 370 aa26.12■■□□□ 1.77
UPF3A-202ENST00000375299 KIF24Q5T7B8 1368 aa26.12■■□□□ 1.77
UPF3A-202ENST00000375299 ELL2O00472 640 aaPredicted RBP26.12■■□□□ 1.77
UPF3A-202ENST00000375299 TWISTNBQ3B726 338 aaPredicted RBP26.12■■□□□ 1.77
UPF3A-202ENST00000375299 TTC22Q5TAA0 569 aa26.11■■□□□ 1.77
UPF3A-202ENST00000375299 DLG5Q8TDM6 1919 aa26.11■■□□□ 1.77
UPF3A-202ENST00000375299 CYP2E1P05181 493 aaPredicted RBP26.1■■□□□ 1.77
UPF3A-202ENST00000375299 STAG3Q9UJ98 1225 aa26.1■■□□□ 1.77
UPF3A-202ENST00000375299 MCTP1Q6DN14 999 aa26.1■■□□□ 1.77
UPF3A-202ENST00000375299 DCTPP1Q9H773 170 aa26.1■■□□□ 1.77
UPF3A-202ENST00000375299 FBLN1P23142 703 aa26.09■■□□□ 1.77
UPF3A-202ENST00000375299 USP26Q9BXU7 913 aa26.08■■□□□ 1.77
UPF3A-202ENST00000375299 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.07■■□□□ 1.76
UPF3A-202ENST00000375299 ATP7BP35670 1465 aa26.07■■□□□ 1.76
UPF3A-202ENST00000375299 KIAA1211Q6ZU35 1233 aa26.07■■□□□ 1.76
UPF3A-202ENST00000375299 LMBRD1Q9NUN5 540 aa26.07■■□□□ 1.76
UPF3A-202ENST00000375299 INTS3Q68E01 1043 aaKnown RBP26.06■■□□□ 1.76
UPF3A-202ENST00000375299 C8orf58Q8NAV2 365 aa26.06■■□□□ 1.76
UPF3A-202ENST00000375299 MSNP26038 577 aaKnown RBP26.06■■□□□ 1.76
UPF3A-202ENST00000375299 CYB5RLQ6IPT4 315 aa26.06■■□□□ 1.76
UPF3A-202ENST00000375299 ZSCAN23Q3MJ62 389 aa26.05■■□□□ 1.76
UPF3A-202ENST00000375299 CAVIN1Q6NZI2 390 aaKnown RBP26.05■■□□□ 1.76
UPF3A-202ENST00000375299 LMOD3Q0VAK6 560 aa26.05■■□□□ 1.76
UPF3A-202ENST00000375299 VSIG10Q8N0Z9 540 aa26.05■■□□□ 1.76
UPF3A-202ENST00000375299 DLC1Q96QB1 1528 aa26.05■■□□□ 1.76
UPF3A-202ENST00000375299 OFD1O75665 1012 aa26.04■■□□□ 1.76
UPF3A-202ENST00000375299 A2ML1A8K2U0 1454 aa26.04■■□□□ 1.76
UPF3A-202ENST00000375299 IL13P35225 146 aa26.04■■□□□ 1.76
UPF3A-202ENST00000375299 CWC22Q9HCG8 908 aaKnown RBP26.04■■□□□ 1.76
UPF3A-202ENST00000375299 CDK12Q9NYV4 1490 aaPredicted RBP26.03■■□□□ 1.76
UPF3A-202ENST00000375299 FAM69CQ0P6D2 419 aa26.03■■□□□ 1.76
UPF3A-202ENST00000375299 RIMS2Q9UQ26 1411 aa26.03■■□□□ 1.76
UPF3A-202ENST00000375299 NCLP19338 710 aaKnown RBP26.03■■□□□ 1.76
UPF3A-202ENST00000375299 AGLP35573 1532 aa26.02■■□□□ 1.76
UPF3A-202ENST00000375299 HS1BP3Q53T59 392 aa26.02■■□□□ 1.76
UPF3A-202ENST00000375299 PDZRN4Q6ZMN7 1036 aaPredicted RBP26.02■■□□□ 1.76
UPF3A-202ENST00000375299 WAPLQ7Z5K2 1190 aa26.02■■□□□ 1.76
UPF3A-202ENST00000375299 PPP6R1Q9UPN7 881 aa26.02■■□□□ 1.76
UPF3A-202ENST00000375299 ATP10DQ9P241 1426 aa26.02■■□□□ 1.76
UPF3A-202ENST00000375299 C16orf71Q8IYS4 520 aaPredicted RBP26.02■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms