RNA–Protein interactions for RNA: ENST00000374490.7

HMGCL-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCL, Length 1,600 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-203ENST00000374490 IGHDP01880 384 aa17.84■□□□□ 0.45
HMGCL-203ENST00000374490 ZNF772Q68DY9 489 aaPredicted RBP17.84■□□□□ 0.45
HMGCL-203ENST00000374490 COL16A1Q07092 1604 aaPredicted RBP17.83■□□□□ 0.45
HMGCL-203ENST00000374490 U2SURPO15042 1029 aaKnown RBP17.83■□□□□ 0.45
HMGCL-203ENST00000374490 TMPOP42166 694 aaKnown RBP17.83■□□□□ 0.45
HMGCL-203ENST00000374490 ZKSCAN2Q63HK3 967 aa17.83■□□□□ 0.45
HMGCL-203ENST00000374490 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.83■□□□□ 0.44
HMGCL-203ENST00000374490 DIAPH1O60610 1272 aaKnown RBP17.83■□□□□ 0.44
HMGCL-203ENST00000374490 BRINP3Q76B58 766 aa17.83■□□□□ 0.44
HMGCL-203ENST00000374490 DCCP43146 1447 aa17.82■□□□□ 0.44
HMGCL-203ENST00000374490 RWDD1Q9H446 243 aaPredicted RBP17.82■□□□□ 0.44
HMGCL-203ENST00000374490 VIRMAQ69YN4 1812 aaKnown RBP17.82■□□□□ 0.44
HMGCL-203ENST00000374490 CABP1Q9NZU7 370 aa17.81■□□□□ 0.44
HMGCL-203ENST00000374490 PPIP5K1Q6PFW1 1433 aa17.81■□□□□ 0.44
HMGCL-203ENST00000374490 AHDC1Q5TGY3 1603 aaPredicted RBP17.81■□□□□ 0.44
HMGCL-203ENST00000374490 MVPQ14764 893 aaKnown RBP17.8■□□□□ 0.44
HMGCL-203ENST00000374490 ITSN1Q15811 1721 aa17.8■□□□□ 0.44
HMGCL-203ENST00000374490 LRP6O75581 1613 aa17.8■□□□□ 0.44
HMGCL-203ENST00000374490 FCHSD2O94868 740 aa17.79■□□□□ 0.44
HMGCL-203ENST00000374490 DZIP1LQ8IYY4 767 aaKnown RBP17.79■□□□□ 0.44
HMGCL-203ENST00000374490 NEFMP07197 916 aa17.78■□□□□ 0.44
HMGCL-203ENST00000374490 FTSJ3Q8IY81 847 aaKnown RBP17.78■□□□□ 0.44
HMGCL-203ENST00000374490 NUDT16Q96DE0 195 aaKnown RBP17.78■□□□□ 0.44
HMGCL-203ENST00000374490 TRIM35Q9UPQ4 493 aa17.78■□□□□ 0.44
HMGCL-203ENST00000374490 NUTM2BA6NNL0 878 aaPredicted RBP17.77■□□□□ 0.44
HMGCL-203ENST00000374490 NUTM2EB1AL46 878 aaPredicted RBP17.77■□□□□ 0.44
HMGCL-203ENST00000374490 RLBP1P12271 317 aa17.77■□□□□ 0.44
HMGCL-203ENST00000374490 NUTM2AQ8IVF1 878 aaPredicted RBP17.77■□□□□ 0.44
HMGCL-203ENST00000374490 BCL11AQ9H165 835 aa17.77■□□□□ 0.44
HMGCL-203ENST00000374490 CCDC61Q9Y6R9 512 aa17.77■□□□□ 0.44
HMGCL-203ENST00000374490 EDC4Q6P2E9 1401 aaKnown RBP17.77■□□□□ 0.43
HMGCL-203ENST00000374490 TOPAZ1Q8N9V7 1692 aa17.77■□□□□ 0.43
HMGCL-203ENST00000374490 LAS1LQ9Y4W2 734 aaKnown RBP17.76■□□□□ 0.43
HMGCL-203ENST00000374490 AKAP12Q02952 1782 aa17.76■□□□□ 0.43
HMGCL-203ENST00000374490 ZNF428Q96B54 188 aa17.76■□□□□ 0.43
HMGCL-203ENST00000374490 SMC4Q9NTJ3 1288 aa17.76■□□□□ 0.43
HMGCL-203ENST00000374490 MON2Q7Z3U7 1717 aa17.75■□□□□ 0.43
HMGCL-203ENST00000374490 KIF16BQ96L93 1317 aa17.75■□□□□ 0.43
HMGCL-203ENST00000374490 RIPK4P57078 832 aa17.75■□□□□ 0.43
HMGCL-203ENST00000374490 CALD1Q05682 793 aaKnown RBP17.75■□□□□ 0.43
HMGCL-203ENST00000374490 EXOSC9Q06265 439 aaKnown RBP17.75■□□□□ 0.43
HMGCL-203ENST00000374490 PCDHB15Q9Y5E8 787 aa17.75■□□□□ 0.43
HMGCL-203ENST00000374490 MST1RQ04912 1400 aa17.75■□□□□ 0.43
HMGCL-203ENST00000374490 IPO8O15397 1037 aaKnown RBP17.74■□□□□ 0.43
HMGCL-203ENST00000374490 CPSF1Q10570 1443 aaKnown RBP17.74■□□□□ 0.43
HMGCL-203ENST00000374490 ALDH1L2Q3SY69 923 aa17.74■□□□□ 0.43
HMGCL-203ENST00000374490 LRRC59Q96AG4 307 aaKnown RBP17.74■□□□□ 0.43
HMGCL-203ENST00000374490 BCL2L13Q9BXK5 485 aa17.74■□□□□ 0.43
HMGCL-203ENST00000374490 DDX19BQ9UMR2 479 aa17.74■□□□□ 0.43
HMGCL-203ENST00000374490 ADGRL3Q9HAR2 1447 aa17.73■□□□□ 0.43
HMGCL-203ENST00000374490 RXRBP28702 533 aa17.73■□□□□ 0.43
HMGCL-203ENST00000374490 AATKQ6ZMQ8 1374 aa17.73■□□□□ 0.43
HMGCL-203ENST00000374490 CDK12Q9NYV4 1490 aaPredicted RBP17.73■□□□□ 0.43
HMGCL-203ENST00000374490 TSR2Q969E8 191 aaKnown RBP17.72■□□□□ 0.43
HMGCL-203ENST00000374490 PRR36Q9H6K5 1346 aa17.72■□□□□ 0.43
HMGCL-203ENST00000374490 ATF7IPQ6VMQ6 1270 aa17.72■□□□□ 0.43
HMGCL-203ENST00000374490 UPF2Q9HAU5 1272 aaKnown RBP17.72■□□□□ 0.43
HMGCL-203ENST00000374490 PDZRN3Q9UPQ7 1066 aa17.72■□□□□ 0.43
HMGCL-203ENST00000374490 HDAC1Q13547 482 aaPredicted RBP17.71■□□□□ 0.43
HMGCL-203ENST00000374490 RSPH6AQ9H0K4 717 aa17.71■□□□□ 0.43
HMGCL-203ENST00000374490 POLKQ9UBT6 870 aa17.71■□□□□ 0.43
HMGCL-203ENST00000374490 TNNQ9UQP3 1299 aa17.71■□□□□ 0.43
HMGCL-203ENST00000374490 BRPF1P55201 1214 aaPredicted RBP17.7■□□□□ 0.42
HMGCL-203ENST00000374490 AFF2P51816 1311 aa17.7■□□□□ 0.42
HMGCL-203ENST00000374490 BECN1Q14457 450 aa17.69■□□□□ 0.42
HMGCL-203ENST00000374490 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.69■□□□□ 0.42
HMGCL-203ENST00000374490 SSH1Q8WYL5 1049 aa17.69■□□□□ 0.42
HMGCL-203ENST00000374490 ZNF692Q9BU19 519 aaPredicted RBP17.69■□□□□ 0.42
HMGCL-203ENST00000374490 CHMP4BQ9H444 224 aaKnown RBP17.69■□□□□ 0.42
HMGCL-203ENST00000374490 FMN2Q9NZ56 1722 aa17.69■□□□□ 0.42
HMGCL-203ENST00000374490 TRIM27P14373 513 aa17.69■□□□□ 0.42
HMGCL-203ENST00000374490 NFE2L2Q16236 605 aa17.69■□□□□ 0.42
HMGCL-203ENST00000374490 UPF1Q92900 1129 aaKnown RBP eCLIP17.69■□□□□ 0.423e-12■■■■■ 46
HMGCL-203ENST00000374490 NALCNQ8IZF0 1738 aa17.68■□□□□ 0.42
HMGCL-203ENST00000374490 PRKAR2BP31323 418 aa17.68■□□□□ 0.42
HMGCL-203ENST00000374490 LMOD3Q0VAK6 560 aa17.68■□□□□ 0.42
HMGCL-203ENST00000374490 ANKARQ7Z5J8 1434 aa17.68■□□□□ 0.42
HMGCL-203ENST00000374490 USP19O94966 1318 aa17.67■□□□□ 0.42
HMGCL-203ENST00000374490 NUTM2FA1L443 756 aa17.67■□□□□ 0.42
HMGCL-203ENST00000374490 DDX17Q92841 729 aaKnown RBP17.67■□□□□ 0.42
HMGCL-203ENST00000374490 C8orf37Q96NL8 207 aa17.67■□□□□ 0.42
HMGCL-203ENST00000374490 PLEKHG3A1L390 1219 aa17.66■□□□□ 0.42
HMGCL-203ENST00000374490 NRKQ7Z2Y5 1582 aa17.66■□□□□ 0.42
HMGCL-203ENST00000374490 ITPRIPQ8IWB1 547 aa17.65■□□□□ 0.42
HMGCL-203ENST00000374490 NOB1Q9ULX3 412 aaKnown RBP17.65■□□□□ 0.42
HMGCL-203ENST00000374490 RGPD8O14715 1765 aaPredicted RBP17.65■□□□□ 0.42
HMGCL-203ENST00000374490 C1orf167Q5SNV9 1468 aa17.65■□□□□ 0.42
HMGCL-203ENST00000374490 COG3Q96JB2 828 aa17.65■□□□□ 0.42
HMGCL-203ENST00000374490 IL13P35225 146 aa17.64■□□□□ 0.41
HMGCL-203ENST00000374490 GNAI1P63096 354 aa17.64■□□□□ 0.41
HMGCL-203ENST00000374490 NFKBIBQ15653 356 aa17.64■□□□□ 0.41
HMGCL-203ENST00000374490 ARHGAP45Q92619 1136 aa17.64■□□□□ 0.41
HMGCL-203ENST00000374490 IFT57Q9NWB7 429 aa17.64■□□□□ 0.41
HMGCL-203ENST00000374490 ACEP12821 1306 aa17.64■□□□□ 0.41
HMGCL-203ENST00000374490 SMC5Q8IY18 1101 aa17.62■□□□□ 0.41
HMGCL-203ENST00000374490 QTRT2Q9H974 415 aaKnown RBP17.62■□□□□ 0.41
HMGCL-203ENST00000374490 USP6P35125 1406 aa17.62■□□□□ 0.41
HMGCL-203ENST00000374490 NHSL1Q5SYE7 1610 aa17.62■□□□□ 0.41
HMGCL-203ENST00000374490 ADAMTS2O95450 1211 aa17.61■□□□□ 0.41
HMGCL-203ENST00000374490 SLC4A3P48751 1232 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms