RNA–Protein interactions for RNA: ENST00000373887.7

TRAF1-201, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 6,324 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-201ENST00000373887 NUDT16Q96DE0 195 aaKnown RBP17.11■□□□□ 0.33
TRAF1-201ENST00000373887 CWC15Q9P013 229 aaKnown RBP17.11■□□□□ 0.33
TRAF1-201ENST00000373887 ATP2B1P20020 1258 aa17.1■□□□□ 0.33
TRAF1-201ENST00000373887 NASPP49321 788 aaPredicted RBP17.1■□□□□ 0.33
TRAF1-201ENST00000373887 SDF4Q9BRK5 362 aa17.1■□□□□ 0.33
TRAF1-201ENST00000373887 CLASRPQ8N2M8 674 aaKnown RBP17.1■□□□□ 0.33
TRAF1-201ENST00000373887 ERICH3Q5RHP9 1530 aa17.1■□□□□ 0.33
TRAF1-201ENST00000373887 PTCD1O75127 700 aaKnown RBP17.09■□□□□ 0.33
TRAF1-201ENST00000373887 AXDND1Q5T1B0 1012 aaPredicted RBP17.09■□□□□ 0.33
TRAF1-201ENST00000373887 DNMBPQ6XZF7 1577 aa17.09■□□□□ 0.33
TRAF1-201ENST00000373887 CNTROBQ8N137 903 aa17.09■□□□□ 0.33
TRAF1-201ENST00000373887 FMNL2Q96PY5 1086 aa17.09■□□□□ 0.33
TRAF1-201ENST00000373887 KIAA1107Q9UPP5 1409 aa17.09■□□□□ 0.33
TRAF1-201ENST00000373887 NEFHP12036 1026 aa17.09■□□□□ 0.33
TRAF1-201ENST00000373887 C22orf23Q9BZE7 217 aa17.09■□□□□ 0.33
TRAF1-201ENST00000373887 ERCC4Q92889 916 aaPredicted RBP17.08■□□□□ 0.33
TRAF1-201ENST00000373887 TRIM5Q9C035 493 aa17.08■□□□□ 0.33
TRAF1-201ENST00000373887 ANKRD62A6NC57 917 aa17.08■□□□□ 0.33
TRAF1-201ENST00000373887 DAPK1P53355 1430 aa17.08■□□□□ 0.32
TRAF1-201ENST00000373887 RBM10P98175 930 aaKnown RBP17.08■□□□□ 0.32
TRAF1-201ENST00000373887 MYO6Q9UM54 1294 aa17.07■□□□□ 0.32
TRAF1-201ENST00000373887 MPHOSPH8Q99549 860 aa17.07■□□□□ 0.32
TRAF1-201ENST00000373887 FOXO3O43524 673 aa17.07■□□□□ 0.32
TRAF1-201ENST00000373887 NINLQ9Y2I6 1382 aa17.07■□□□□ 0.32
TRAF1-201ENST00000373887 GNAI3P08754 354 aa17.07■□□□□ 0.32
TRAF1-201ENST00000373887 CCDC158Q5M9N0 1113 aa17.07■□□□□ 0.32
TRAF1-201ENST00000373887 TOP2BQ02880 1626 aa17.06■□□□□ 0.32
TRAF1-201ENST00000373887 ZNF219Q9P2Y4 722 aaPredicted RBP17.06■□□□□ 0.32
TRAF1-201ENST00000373887 SPC24Q8NBT2 197 aa17.06■□□□□ 0.32
TRAF1-201ENST00000373887 EFCAB5A4FU69 1503 aa17.06■□□□□ 0.32
TRAF1-201ENST00000373887 BCAR3O75815 825 aa17.06■□□□□ 0.32
TRAF1-201ENST00000373887 CEBPZQ03701 1054 aaKnown RBP17.06■□□□□ 0.32
TRAF1-201ENST00000373887 CAVIN1Q6NZI2 390 aaKnown RBP17.06■□□□□ 0.32
TRAF1-201ENST00000373887 PLB1Q6P1J6 1458 aa17.06■□□□□ 0.32
TRAF1-201ENST00000373887 NGLY1Q96IV0 654 aa17.05■□□□□ 0.32
TRAF1-201ENST00000373887 HFM1A2PYH4 1435 aa17.05■□□□□ 0.32
TRAF1-201ENST00000373887 GNAI2P04899 355 aa17.04■□□□□ 0.32
TRAF1-201ENST00000373887 XBP1P17861 261 aa17.04■□□□□ 0.32
TRAF1-201ENST00000373887 GNL3LQ9NVN8 582 aaKnown RBP17.04■□□□□ 0.32
TRAF1-201ENST00000373887 MAGEC2Q9UBF1 373 aaPredicted RBP17.04■□□□□ 0.32
TRAF1-201ENST00000373887 FKBP4Q02790 459 aaKnown RBP eCLIP17.04■□□□□ 0.32
TRAF1-201ENST00000373887 LEKR1Q6ZMV7 388 aa17.04■□□□□ 0.32
TRAF1-201ENST00000373887 CDK5RAP3Q96JB5 506 aa17.04■□□□□ 0.32
TRAF1-201ENST00000373887 NFKBIBQ15653 356 aa17.04■□□□□ 0.32
TRAF1-201ENST00000373887 MPRIPQ6WCQ1 1025 aa17.04■□□□□ 0.32
TRAF1-201ENST00000373887 ZSCAN29Q8IWY8 852 aaPredicted RBP17.04■□□□□ 0.32
TRAF1-201ENST00000373887 CCDC57Q2TAC2 916 aa17.04■□□□□ 0.32
TRAF1-201ENST00000373887 SUPT6HQ7KZ85 1726 aaKnown RBP17.03■□□□□ 0.32
TRAF1-201ENST00000373887 SYCP1Q15431 976 aa17.03■□□□□ 0.32
TRAF1-201ENST00000373887 HMGXB3Q12766 1538 aa17.03■□□□□ 0.32
TRAF1-201ENST00000373887 SMARCE1Q969G3 411 aa17.02■□□□□ 0.32
TRAF1-201ENST00000373887 AMOTL2Q9Y2J4 779 aa17.02■□□□□ 0.32
TRAF1-201ENST00000373887 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.02■□□□□ 0.32
TRAF1-201ENST00000373887 ADGRL1O94910 1474 aa17.02■□□□□ 0.32
TRAF1-201ENST00000373887 CT47B1P0C2W7 299 aaPredicted RBP17.02■□□□□ 0.32
TRAF1-201ENST00000373887 MCM10Q7L590 875 aa17.02■□□□□ 0.32
TRAF1-201ENST00000373887 THUMPD2Q9BTF0 503 aaKnown RBP17.02■□□□□ 0.32
TRAF1-201ENST00000373887 CDC45O75419 566 aa17.02■□□□□ 0.31
TRAF1-201ENST00000373887 ENOX2Q16206 610 aaKnown RBP17.02■□□□□ 0.31
TRAF1-201ENST00000373887 KRT18P05783 430 aaKnown RBP17.02■□□□□ 0.31
TRAF1-201ENST00000373887 BRD4O60885 1362 aaPredicted RBP17.01■□□□□ 0.31
TRAF1-201ENST00000373887 TSPY26PQ9H489 355 aa17.01■□□□□ 0.31
TRAF1-201ENST00000373887 EPRSP07814 1512 aaKnown RBP17.01■□□□□ 0.31
TRAF1-201ENST00000373887 SART3Q15020 963 aaKnown RBP17.01■□□□□ 0.31
TRAF1-201ENST00000373887 TMOD3Q9NYL9 352 aa17.01■□□□□ 0.31
TRAF1-201ENST00000373887 FILIP1LQ4L180 1135 aa17■□□□□ 0.31
TRAF1-201ENST00000373887 MPNDQ8N594 471 aa17■□□□□ 0.31
TRAF1-201ENST00000373887 SRCIN1Q9C0H9 1055 aa17■□□□□ 0.31
TRAF1-201ENST00000373887 STK3Q13188 491 aa17■□□□□ 0.31
TRAF1-201ENST00000373887 IQGAP2Q13576 1575 aa17■□□□□ 0.31
TRAF1-201ENST00000373887 CCDC66A2RUB6 948 aa17■□□□□ 0.31
TRAF1-201ENST00000373887 NME9Q86XW9 330 aa17■□□□□ 0.31
TRAF1-201ENST00000373887 SLC3A2P08195 630 aaKnown RBP17■□□□□ 0.31
TRAF1-201ENST00000373887 MRE11P49959 708 aa17■□□□□ 0.31
TRAF1-201ENST00000373887 SEPT7Q16181 437 aaKnown RBP17■□□□□ 0.31
TRAF1-201ENST00000373887 KINO60870 393 aaKnown RBP16.99■□□□□ 0.31
TRAF1-201ENST00000373887 WWC2Q6AWC2 1192 aa16.99■□□□□ 0.31
TRAF1-201ENST00000373887 FANCIQ9NVI1 1328 aa16.99■□□□□ 0.31
TRAF1-201ENST00000373887 NSD3Q9BZ95 1437 aa16.99■□□□□ 0.31
TRAF1-201ENST00000373887 PRPF40AO75400 957 aaKnown RBP16.99■□□□□ 0.31
TRAF1-201ENST00000373887 KIAA0586Q9BVV6 1533 aa16.99■□□□□ 0.31
TRAF1-201ENST00000373887 PSMA5P28066 241 aa16.99■□□□□ 0.31
TRAF1-201ENST00000373887 CENPHQ9H3R5 247 aa16.99■□□□□ 0.31
TRAF1-201ENST00000373887 MAGI1Q96QZ7 1491 aaPredicted RBP16.99■□□□□ 0.31
TRAF1-201ENST00000373887 PNISRQ8TF01 805 aaKnown RBP16.99■□□□□ 0.31
TRAF1-201ENST00000373887 ZRSR2Q15696 482 aaKnown RBP16.99■□□□□ 0.31
TRAF1-201ENST00000373887 PIBF1Q8WXW3 757 aa16.98■□□□□ 0.31
TRAF1-201ENST00000373887 IBSPP21815 317 aaPredicted RBP16.98■□□□□ 0.31
TRAF1-201ENST00000373887 FAM193AP78312 1265 aa16.98■□□□□ 0.31
TRAF1-201ENST00000373887 GNAT3A8MTJ3 354 aa16.98■□□□□ 0.31
TRAF1-201ENST00000373887 CCDC61Q9Y6R9 512 aa16.98■□□□□ 0.31
TRAF1-201ENST00000373887 RPGRIP1LQ68CZ1 1315 aa16.97■□□□□ 0.31
TRAF1-201ENST00000373887 TRAK2O60296 914 aa16.97■□□□□ 0.31
TRAF1-201ENST00000373887 ZPR1O75312 459 aa16.97■□□□□ 0.31
TRAF1-201ENST00000373887 TAX1BP1Q86VP1 789 aa16.97■□□□□ 0.31
TRAF1-201ENST00000373887 FAM177A1Q8N128 213 aaPredicted RBP16.97■□□□□ 0.31
TRAF1-201ENST00000373887 RAI14Q9P0K7 980 aa16.97■□□□□ 0.31
TRAF1-201ENST00000373887 FIBPO43427 364 aa16.97■□□□□ 0.31
TRAF1-201ENST00000373887 AACSQ86V21 672 aa16.97■□□□□ 0.31
TRAF1-201ENST00000373887 NUP133Q8WUM0 1156 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms