RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 IPO4Q8TEX9 1081 aaKnown RBP10.62□□□□□ -0.71
SYNE1-209ENST00000367257 EIF3JO75822 258 aaKnown RBP10.62□□□□□ -0.71
SYNE1-209ENST00000367257 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.62□□□□□ -0.71
SYNE1-209ENST00000367257 GOLGA6L7A0A1B0GV03 622 aa10.61□□□□□ -0.71
SYNE1-209ENST00000367257 VPS37CA5D8V6 355 aaPredicted RBP10.61□□□□□ -0.71
SYNE1-209ENST00000367257 SLC3A2P08195 630 aaKnown RBP10.61□□□□□ -0.71
SYNE1-209ENST00000367257 CCDC30Q5VVM6 783 aa10.61□□□□□ -0.71
SYNE1-209ENST00000367257 WDR33Q9C0J8 1336 aaKnown RBP10.61□□□□□ -0.71
SYNE1-209ENST00000367257 FKBP5Q13451 457 aaPredicted RBP10.61□□□□□ -0.71
SYNE1-209ENST00000367257 ANKRD18AQ8IVF6 992 aa10.61□□□□□ -0.71
SYNE1-209ENST00000367257 ZSCAN31Q96LW9 406 aaPredicted RBP10.61□□□□□ -0.71
SYNE1-209ENST00000367257 CCDC43Q96MW1 224 aaKnown RBP10.61□□□□□ -0.71
SYNE1-209ENST00000367257 HECW1Q76N89 1606 aa10.61□□□□□ -0.71
SYNE1-209ENST00000367257 WDR63Q8IWG1 891 aa10.6□□□□□ -0.71
SYNE1-209ENST00000367257 SMG6Q86US8 1419 aaKnown RBP10.6□□□□□ -0.71
SYNE1-209ENST00000367257 ANKRD50Q9ULJ7 1429 aa10.6□□□□□ -0.71
SYNE1-209ENST00000367257 UBTFL1P0CB47 393 aaPredicted RBP10.6□□□□□ -0.71
SYNE1-209ENST00000367257 CLASRPQ8N2M8 674 aaKnown RBP10.6□□□□□ -0.71
SYNE1-209ENST00000367257 EHBP1L1Q8N3D4 1523 aa10.6□□□□□ -0.71
SYNE1-209ENST00000367257 ABCA9Q8IUA7 1624 aa10.6□□□□□ -0.71
SYNE1-209ENST00000367257 BCORL1Q5H9F3 1711 aa10.59□□□□□ -0.71
SYNE1-209ENST00000367257 CCDC192P0DO97 292 aa10.59□□□□□ -0.71
SYNE1-209ENST00000367257 TBC1D2BQ9UPU7 963 aa10.59□□□□□ -0.71
SYNE1-209ENST00000367257 DAPK1P53355 1430 aa10.59□□□□□ -0.71
SYNE1-209ENST00000367257 DYNC1I1O14576 645 aa10.59□□□□□ -0.71
SYNE1-209ENST00000367257 ODF2Q5BJF6 829 aa10.59□□□□□ -0.71
SYNE1-209ENST00000367257 CT47A1Q5JQC4 288 aaPredicted RBP10.59□□□□□ -0.71
SYNE1-209ENST00000367257 SDF4Q9BRK5 362 aa10.59□□□□□ -0.71
SYNE1-209ENST00000367257 ZNHIT6Q9NWK9 470 aaKnown RBP10.59□□□□□ -0.71
SYNE1-209ENST00000367257 MAGEC2Q9UBF1 373 aaPredicted RBP10.59□□□□□ -0.71
SYNE1-209ENST00000367257 OFD1O75665 1012 aa10.59□□□□□ -0.71
SYNE1-209ENST00000367257 CCT4P50991 539 aaKnown RBP10.59□□□□□ -0.71
SYNE1-209ENST00000367257 KIF14Q15058 1648 aa10.59□□□□□ -0.71
SYNE1-209ENST00000367257 PLEKHH1Q9ULM0 1364 aa10.59□□□□□ -0.71
SYNE1-209ENST00000367257 EPS15P42566 896 aa10.58□□□□□ -0.72
SYNE1-209ENST00000367257 TSPYL4Q9UJ04 414 aa10.58□□□□□ -0.72
SYNE1-209ENST00000367257 RRP7AQ9Y3A4 280 aaKnown RBP10.58□□□□□ -0.72
SYNE1-209ENST00000367257 ABCC10Q5T3U5 1492 aa10.58□□□□□ -0.72
SYNE1-209ENST00000367257 PREX2Q70Z35 1606 aa10.58□□□□□ -0.72
SYNE1-209ENST00000367257 DHX29Q7Z478 1369 aaKnown RBP10.58□□□□□ -0.72
SYNE1-209ENST00000367257 FOXD4L5Q5VV16 416 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-209ENST00000367257 FOXD4L4Q8WXT5 416 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-209ENST00000367257 STIM1Q13586 685 aa10.58□□□□□ -0.72
SYNE1-209ENST00000367257 NCBP3Q53F19 620 aaKnown RBP10.58□□□□□ -0.72
SYNE1-209ENST00000367257 ZNF526Q8TF50 670 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-209ENST00000367257 GBP3Q9H0R5 595 aa10.58□□□□□ -0.72
SYNE1-209ENST00000367257 VPS37DQ86XT2 251 aa10.57□□□□□ -0.72
SYNE1-209ENST00000367257 MAPKBP1O60336 1514 aa10.57□□□□□ -0.72
SYNE1-209ENST00000367257 TNNT1P13805 278 aa10.57□□□□□ -0.72
SYNE1-209ENST00000367257 ZSCAN25Q6NSZ9 544 aa10.57□□□□□ -0.72
SYNE1-209ENST00000367257 CDKL5O76039 1030 aa10.57□□□□□ -0.72
SYNE1-209ENST00000367257 KIF20AO95235 890 aa10.57□□□□□ -0.72
SYNE1-209ENST00000367257 FAM193AP78312 1265 aa10.57□□□□□ -0.72
SYNE1-209ENST00000367257 KRT32Q14532 448 aa10.57□□□□□ -0.72
SYNE1-209ENST00000367257 GOLGA6L10A6NI86 522 aa10.56□□□□□ -0.72
SYNE1-209ENST00000367257 TRIM5Q9C035 493 aa10.56□□□□□ -0.72
SYNE1-209ENST00000367257 NBPF1Q3BBV0 1214 aa10.56□□□□□ -0.72
SYNE1-209ENST00000367257 MCM3P25205 808 aa10.56□□□□□ -0.72
SYNE1-209ENST00000367257 CTR9Q6PD62 1173 aa10.56□□□□□ -0.72
SYNE1-209ENST00000367257 RPGRIP1LQ68CZ1 1315 aa10.56□□□□□ -0.72
SYNE1-209ENST00000367257 PLIN1O60240 522 aa10.55□□□□□ -0.72
SYNE1-209ENST00000367257 TDO2P48775 406 aa10.55□□□□□ -0.72
SYNE1-209ENST00000367257 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.55□□□□□ -0.72
SYNE1-209ENST00000367257 NCOA2Q15596 1464 aa10.55□□□□□ -0.72
SYNE1-209ENST00000367257 RAPGEF4Q8WZA2 1011 aa10.55□□□□□ -0.72
SYNE1-209ENST00000367257 NAP1L1P55209 391 aaKnown RBP10.55□□□□□ -0.72
SYNE1-209ENST00000367257 GLI2P10070 1586 aa10.55□□□□□ -0.72
SYNE1-209ENST00000367257 VGLL3A8MV65 326 aa10.55□□□□□ -0.72
SYNE1-209ENST00000367257 SMTNL1A8MU46 457 aa10.54□□□□□ -0.72
SYNE1-209ENST00000367257 KRT85P78386 507 aa10.54□□□□□ -0.72
SYNE1-209ENST00000367257 ARAP3Q8WWN8 1544 aa10.54□□□□□ -0.72
SYNE1-209ENST00000367257 KIAA0754O94854 1291 aa10.54□□□□□ -0.72
SYNE1-209ENST00000367257 GNAI2P04899 355 aa10.54□□□□□ -0.72
SYNE1-209ENST00000367257 EVA1CP58658 441 aa10.54□□□□□ -0.72
SYNE1-209ENST00000367257 PPP4R3BQ5MIZ7 849 aa10.54□□□□□ -0.72
SYNE1-209ENST00000367257 WASF1Q92558 559 aa10.54□□□□□ -0.72
SYNE1-209ENST00000367257 CFAP45Q9UL16 551 aa10.54□□□□□ -0.72
SYNE1-209ENST00000367257 SIGLEC1Q9BZZ2 1709 aa10.54□□□□□ -0.72
SYNE1-209ENST00000367257 K7ELQ4 463 aaPredicted RBP10.54□□□□□ -0.72
SYNE1-209ENST00000367257 BCL2L13Q9BXK5 485 aa10.54□□□□□ -0.72
SYNE1-209ENST00000367257 INCENPQ9NQS7 918 aa10.54□□□□□ -0.72
SYNE1-209ENST00000367257 PPP6R1Q9UPN7 881 aa10.54□□□□□ -0.72
SYNE1-209ENST00000367257 KIAA1107Q9UPP5 1409 aa10.54□□□□□ -0.72
SYNE1-209ENST00000367257 CCDC112Q8NEF3 446 aa10.53□□□□□ -0.72
SYNE1-209ENST00000367257 ZNF692Q9BU19 519 aaPredicted RBP10.53□□□□□ -0.72
SYNE1-209ENST00000367257 TRERF1Q96PN7 1200 aa10.53□□□□□ -0.72
SYNE1-209ENST00000367257 LNPKQ9C0E8 428 aa10.53□□□□□ -0.72
SYNE1-209ENST00000367257 CYP46A1Q9Y6A2 500 aa10.53□□□□□ -0.72
SYNE1-209ENST00000367257 TTC37Q6PGP7 1564 aa10.53□□□□□ -0.72
SYNE1-209ENST00000367257 EPRSP07814 1512 aaKnown RBP10.53□□□□□ -0.72
SYNE1-209ENST00000367257 LTV1Q96GA3 475 aaPredicted RBP10.53□□□□□ -0.72
SYNE1-209ENST00000367257 FSD1Q9BTV5 496 aa10.53□□□□□ -0.72
SYNE1-209ENST00000367257 FAM107BQ9H098 131 aa10.53□□□□□ -0.72
SYNE1-209ENST00000367257 PLEKHO1Q53GL0 409 aaPredicted RBP10.53□□□□□ -0.72
SYNE1-209ENST00000367257 HSP90AB2PQ58FF8 381 aa10.53□□□□□ -0.72
SYNE1-209ENST00000367257 RIC3Q7Z5B4 369 aa10.53□□□□□ -0.72
SYNE1-209ENST00000367257 GNL3LQ9NVN8 582 aaKnown RBP10.53□□□□□ -0.72
SYNE1-209ENST00000367257 CTNNA3Q9UI47 895 aa10.53□□□□□ -0.72
SYNE1-209ENST00000367257 NOL7Q9UMY1 257 aaKnown RBP10.53□□□□□ -0.72
SYNE1-209ENST00000367257 TRIM22Q8IYM9 498 aa10.52□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms