RNA–Protein interactions for RNA: ENST00000367251.7

SYNE1-205, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,837 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-205ENST00000367251 TSR2Q969E8 191 aaKnown RBP10.79□□□□□ -0.68
SYNE1-205ENST00000367251 CABP1Q9NZU7 370 aa10.79□□□□□ -0.68
SYNE1-205ENST00000367251 WDR33Q9C0J8 1336 aaKnown RBP10.79□□□□□ -0.68
SYNE1-205ENST00000367251 TNNT3P45378 269 aaPredicted RBP10.78□□□□□ -0.68
SYNE1-205ENST00000367251 NEK4P51957 841 aa10.78□□□□□ -0.68
SYNE1-205ENST00000367251 ZFYVE27Q5T4F4 411 aa10.78□□□□□ -0.68
SYNE1-205ENST00000367251 RALYLQ86SE5 291 aaKnown RBP10.78□□□□□ -0.68
SYNE1-205ENST00000367251 TMPOP42166 694 aaKnown RBP10.78□□□□□ -0.68
SYNE1-205ENST00000367251 FOXD4L6Q3SYB3 417 aaPredicted RBP10.78□□□□□ -0.68
SYNE1-205ENST00000367251 FOXD4L3Q6VB84 417 aaPredicted RBP10.78□□□□□ -0.68
SYNE1-205ENST00000367251 CCP110O43303 1012 aa10.78□□□□□ -0.68
SYNE1-205ENST00000367251 C11orf95C9JLR9 678 aaPredicted RBP10.78□□□□□ -0.68
SYNE1-205ENST00000367251 IPO7O95373 1038 aaKnown RBP10.78□□□□□ -0.68
SYNE1-205ENST00000367251 FSD1Q9BTV5 496 aa10.78□□□□□ -0.68
SYNE1-205ENST00000367251 IFT57Q9NWB7 429 aa10.78□□□□□ -0.68
SYNE1-205ENST00000367251 TEX35Q5T0J7 233 aa10.78□□□□□ -0.68
SYNE1-205ENST00000367251 EIF2AK4Q9P2K8 1649 aaKnown RBP10.78□□□□□ -0.68
SYNE1-205ENST00000367251 ARGLU1Q9NWB6 273 aaPredicted RBP10.77□□□□□ -0.68
SYNE1-205ENST00000367251 SLC4A2P04920 1241 aa10.77□□□□□ -0.69
SYNE1-205ENST00000367251 HMGN5P82970 282 aaKnown RBP10.77□□□□□ -0.69
SYNE1-205ENST00000367251 ZSCAN31Q96LW9 406 aaPredicted RBP10.77□□□□□ -0.69
SYNE1-205ENST00000367251 ZNF396Q96N95 335 aaPredicted RBP10.77□□□□□ -0.69
SYNE1-205ENST00000367251 NFXL1Q6ZNB6 911 aa10.77□□□□□ -0.69
SYNE1-205ENST00000367251 WDHD1O75717 1129 aaPredicted RBP10.76□□□□□ -0.69
SYNE1-205ENST00000367251 GPATCH8Q9UKJ3 1502 aaKnown RBP10.76□□□□□ -0.69
SYNE1-205ENST00000367251 XBP1P17861 261 aa10.76□□□□□ -0.69
SYNE1-205ENST00000367251 IBSPP21815 317 aaPredicted RBP10.76□□□□□ -0.69
SYNE1-205ENST00000367251 CAVIN1Q6NZI2 390 aaKnown RBP10.76□□□□□ -0.69
SYNE1-205ENST00000367251 THEMISQ8N1K5 641 aaPredicted RBP10.76□□□□□ -0.69
SYNE1-205ENST00000367251 RARSP54136 660 aaKnown RBP10.76□□□□□ -0.69
SYNE1-205ENST00000367251 OLFM4Q6UX06 510 aa10.76□□□□□ -0.69
SYNE1-205ENST00000367251 TXNDC2Q86VQ3 553 aa10.76□□□□□ -0.69
SYNE1-205ENST00000367251 IL16Q14005 1332 aa10.76□□□□□ -0.69
SYNE1-205ENST00000367251 SULT6B1Q6IMI4 303 aa10.76□□□□□ -0.69
SYNE1-205ENST00000367251 ADGRL1O94910 1474 aa10.75□□□□□ -0.69
SYNE1-205ENST00000367251 ABTB2Q8N961 1025 aa10.75□□□□□ -0.69
SYNE1-205ENST00000367251 ARID3AQ99856 593 aa10.75□□□□□ -0.69
SYNE1-205ENST00000367251 BRMS1Q9HCU9 246 aa10.75□□□□□ -0.69
SYNE1-205ENST00000367251 CYP46A1Q9Y6A2 500 aa10.75□□□□□ -0.69
SYNE1-205ENST00000367251 MCM4P33991 863 aa10.75□□□□□ -0.69
SYNE1-205ENST00000367251 DUOX2Q9NRD8 1548 aa10.75□□□□□ -0.69
SYNE1-205ENST00000367251 PPP6R1Q9UPN7 881 aa10.75□□□□□ -0.69
SYNE1-205ENST00000367251 PLEKHH1Q9ULM0 1364 aa10.75□□□□□ -0.69
SYNE1-205ENST00000367251 KIF21AQ7Z4S6 1674 aa10.75□□□□□ -0.69
SYNE1-205ENST00000367251 PRPF40AO75400 957 aaKnown RBP10.75□□□□□ -0.69
SYNE1-205ENST00000367251 CCDC97Q96F63 343 aaPredicted RBP10.75□□□□□ -0.69
SYNE1-205ENST00000367251 POGZQ7Z3K3 1410 aa10.75□□□□□ -0.69
SYNE1-205ENST00000367251 HOMER1Q86YM7 354 aa10.75□□□□□ -0.69
SYNE1-205ENST00000367251 ACBD3Q9H3P7 528 aa10.75□□□□□ -0.69
SYNE1-205ENST00000367251 HDGFL1Q5TGJ6 251 aa10.74□□□□□ -0.69
SYNE1-205ENST00000367251 GRPEL1Q9HAV7 217 aa10.74□□□□□ -0.69
SYNE1-205ENST00000367251 FYB1O15117 783 aa10.74□□□□□ -0.69
SYNE1-205ENST00000367251 ARHGEF12Q9NZN5 1544 aa10.74□□□□□ -0.69
SYNE1-205ENST00000367251 NUTM2BA6NNL0 878 aaPredicted RBP10.74□□□□□ -0.69
SYNE1-205ENST00000367251 NUTM2EB1AL46 878 aaPredicted RBP10.74□□□□□ -0.69
SYNE1-205ENST00000367251 NUTM2AQ8IVF1 878 aaPredicted RBP10.74□□□□□ -0.69
SYNE1-205ENST00000367251 TMEM87AQ8NBN3 555 aa10.74□□□□□ -0.69
SYNE1-205ENST00000367251 ZNF592Q92610 1267 aa10.74□□□□□ -0.69
SYNE1-205ENST00000367251 MTMR7Q9Y216 660 aa10.74□□□□□ -0.69
SYNE1-205ENST00000367251 SPDYE4A6NLX3 237 aa10.73□□□□□ -0.69
SYNE1-205ENST00000367251 SART3Q15020 963 aaKnown RBP10.73□□□□□ -0.69
SYNE1-205ENST00000367251 TBC1D2BQ9UPU7 963 aa10.73□□□□□ -0.69
SYNE1-205ENST00000367251 RAB11FIP3O75154 756 aa10.73□□□□□ -0.69
SYNE1-205ENST00000367251 NEUROD6Q96NK8 337 aa10.73□□□□□ -0.69
SYNE1-205ENST00000367251 SHANK2Q9UPX8 1470 aa10.73□□□□□ -0.69
SYNE1-205ENST00000367251 C1orf115Q9H7X2 142 aa10.73□□□□□ -0.69
SYNE1-205ENST00000367251 CCAR2Q8N163 923 aaKnown RBP10.73□□□□□ -0.69
SYNE1-205ENST00000367251 NLRP2Q9NX02 1062 aa10.73□□□□□ -0.69
SYNE1-205ENST00000367251 KINO60870 393 aaKnown RBP10.73□□□□□ -0.69
SYNE1-205ENST00000367251 CCDC27Q2M243 656 aa10.73□□□□□ -0.69
SYNE1-205ENST00000367251 CCDC192P0DO97 292 aa10.72□□□□□ -0.69
SYNE1-205ENST00000367251 KRT32Q14532 448 aa10.72□□□□□ -0.69
SYNE1-205ENST00000367251 WASHC4Q2M389 1173 aa10.72□□□□□ -0.69
SYNE1-205ENST00000367251 DUSP27Q5VZP5 1158 aa10.72□□□□□ -0.69
SYNE1-205ENST00000367251 FAM13BQ9NYF5 915 aa10.72□□□□□ -0.69
SYNE1-205ENST00000367251 SETQ01105 290 aaPredicted RBP10.72□□□□□ -0.69
SYNE1-205ENST00000367251 TMEM57Q8N5G2 664 aa10.72□□□□□ -0.69
SYNE1-205ENST00000367251 TATP17735 454 aaPredicted RBP10.72□□□□□ -0.69
SYNE1-205ENST00000367251 CCDC61Q9Y6R9 512 aa10.72□□□□□ -0.69
SYNE1-205ENST00000367251 ANKRD36BQ8N2N9 1353 aa10.72□□□□□ -0.69
SYNE1-205ENST00000367251 ASXL1Q8IXJ9 1541 aa10.72□□□□□ -0.69
SYNE1-205ENST00000367251 PIP4K2AP48426 406 aaPredicted RBP10.72□□□□□ -0.69
SYNE1-205ENST00000367251 RRP12Q5JTH9 1297 aaKnown RBP10.72□□□□□ -0.69
SYNE1-205ENST00000367251 JMYQ8N9B5 988 aa10.72□□□□□ -0.69
SYNE1-205ENST00000367251 AIMP1Q12904 312 aaKnown RBP10.71□□□□□ -0.69
SYNE1-205ENST00000367251 SDF4Q9BRK5 362 aa10.71□□□□□ -0.69
SYNE1-205ENST00000367251 MNS1Q8NEH6 495 aa10.71□□□□□ -0.69
SYNE1-205ENST00000367251 CD109Q6YHK3 1445 aa10.71□□□□□ -0.7
SYNE1-205ENST00000367251 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.71□□□□□ -0.7
SYNE1-205ENST00000367251 SPG7Q9UQ90 795 aa10.71□□□□□ -0.7
SYNE1-205ENST00000367251 FAM177BA6PVY3 158 aa10.71□□□□□ -0.7
SYNE1-205ENST00000367251 KRT85P78386 507 aa10.71□□□□□ -0.7
SYNE1-205ENST00000367251 ZNF771Q7L3S4 317 aaPredicted RBP10.71□□□□□ -0.7
SYNE1-205ENST00000367251 CCDC158Q5M9N0 1113 aa10.7□□□□□ -0.7
SYNE1-205ENST00000367251 PTPRKQ15262 1439 aa10.7□□□□□ -0.7
SYNE1-205ENST00000367251 PIP4K2BP78356 416 aa10.7□□□□□ -0.7
SYNE1-205ENST00000367251 ZSCAN25Q6NSZ9 544 aa10.7□□□□□ -0.7
SYNE1-205ENST00000367251 KIF6Q6ZMV9 814 aa10.7□□□□□ -0.7
SYNE1-205ENST00000367251 PUS7Q96PZ0 661 aaKnown RBP10.7□□□□□ -0.7
SYNE1-205ENST00000367251 C14orf93Q9H972 538 aaKnown RBP10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms