RNA–Protein interactions for RNA: ENST00000350034.4

TRIM55-203, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 1,177 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-203ENST00000350034 PPM1GO15355 546 aaPredicted RBP9□□□□□ -0.97
TRIM55-203ENST00000350034 BCAR3O75815 825 aa9□□□□□ -0.97
TRIM55-203ENST00000350034 RARSP54136 660 aaKnown RBP9□□□□□ -0.97
TRIM55-203ENST00000350034 RIPK4P57078 832 aa9□□□□□ -0.97
TRIM55-203ENST00000350034 EIF4A2Q14240 407 aaKnown RBP9□□□□□ -0.97
TRIM55-203ENST00000350034 NFE2L2Q16236 605 aa9□□□□□ -0.97
TRIM55-203ENST00000350034 KIF24Q5T7B8 1368 aa8.99□□□□□ -0.97
TRIM55-203ENST00000350034 PDE3AQ14432 1141 aa8.99□□□□□ -0.97
TRIM55-203ENST00000350034 PHACTR3Q96KR7 559 aa8.99□□□□□ -0.97
TRIM55-203ENST00000350034 PHF8Q9UPP1 1060 aa8.99□□□□□ -0.97
TRIM55-203ENST00000350034 PEAK1Q9H792 1746 aa8.99□□□□□ -0.97
TRIM55-203ENST00000350034 MAP3K19Q56UN5 1328 aa8.99□□□□□ -0.97
TRIM55-203ENST00000350034 FANCIQ9NVI1 1328 aa8.99□□□□□ -0.97
TRIM55-203ENST00000350034 SBNO1A3KN83 1393 aa8.99□□□□□ -0.97
TRIM55-203ENST00000350034 PIK3C2AO00443 1686 aa8.98□□□□□ -0.97
TRIM55-203ENST00000350034 HMOX1P09601 288 aa8.98□□□□□ -0.97
TRIM55-203ENST00000350034 RBM33Q96EV2 1170 aaKnown RBP8.98□□□□□ -0.97
TRIM55-203ENST00000350034 RGPD8O14715 1765 aaPredicted RBP8.97□□□□□ -0.97
TRIM55-203ENST00000350034 NEFMP07197 916 aa8.97□□□□□ -0.97
TRIM55-203ENST00000350034 ZNF853P0CG23 659 aa8.97□□□□□ -0.97
TRIM55-203ENST00000350034 HSP90AB2PQ58FF8 381 aa8.97□□□□□ -0.97
TRIM55-203ENST00000350034 PCDH10Q9P2E7 1040 aa8.97□□□□□ -0.97
TRIM55-203ENST00000350034 ZNF335Q9H4Z2 1342 aaPredicted RBP8.97□□□□□ -0.97
TRIM55-203ENST00000350034 ARHGEF10O15013 1369 aa8.97□□□□□ -0.97
TRIM55-203ENST00000350034 FLT4P35916 1363 aa8.97□□□□□ -0.97
TRIM55-203ENST00000350034 RGPD1P0DJD0 1748 aa8.97□□□□□ -0.97
TRIM55-203ENST00000350034 NCOA3Q9Y6Q9 1424 aa8.97□□□□□ -0.97
TRIM55-203ENST00000350034 KDM2BQ8NHM5 1336 aa8.96□□□□□ -0.98
TRIM55-203ENST00000350034 MARF1Q9Y4F3 1742 aaKnown RBP8.96□□□□□ -0.98
TRIM55-203ENST00000350034 TOM1O60784 492 aa8.95□□□□□ -0.98
TRIM55-203ENST00000350034 NLRP6P59044 892 aa8.95□□□□□ -0.98
TRIM55-203ENST00000350034 CALD1Q05682 793 aaKnown RBP8.95□□□□□ -0.98
TRIM55-203ENST00000350034 EXOSC9Q06265 439 aaKnown RBP8.95□□□□□ -0.98
TRIM55-203ENST00000350034 LMOD3Q0VAK6 560 aa8.95□□□□□ -0.98
TRIM55-203ENST00000350034 AEBP1Q8IUX7 1158 aa8.95□□□□□ -0.98
TRIM55-203ENST00000350034 TSR2Q969E8 191 aaKnown RBP8.95□□□□□ -0.98
TRIM55-203ENST00000350034 IFT57Q9NWB7 429 aa8.95□□□□□ -0.98
TRIM55-203ENST00000350034 IGSF1Q8N6C5 1336 aa8.95□□□□□ -0.98
TRIM55-203ENST00000350034 KDRP35968 1356 aa8.95□□□□□ -0.98
TRIM55-203ENST00000350034 MST1RQ04912 1400 aa8.95□□□□□ -0.98
TRIM55-203ENST00000350034 BRPF1P55201 1214 aaPredicted RBP8.94□□□□□ -0.98
TRIM55-203ENST00000350034 AAMPQ13685 434 aa8.94□□□□□ -0.98
TRIM55-203ENST00000350034 SULT6B1Q6IMI4 303 aa8.94□□□□□ -0.98
TRIM55-203ENST00000350034 PROSER2Q86WR7 435 aaPredicted RBP8.94□□□□□ -0.98
TRIM55-203ENST00000350034 ZNF428Q96B54 188 aa8.94□□□□□ -0.98
TRIM55-203ENST00000350034 C19orf44Q9H6X5 657 aa8.94□□□□□ -0.98
TRIM55-203ENST00000350034 RBM19Q9Y4C8 960 aaKnown RBP8.94□□□□□ -0.98
TRIM55-203ENST00000350034 RTL1A6NKG5 1358 aa8.94□□□□□ -0.98
TRIM55-203ENST00000350034 LRP5O75197 1615 aa8.94□□□□□ -0.98
TRIM55-203ENST00000350034 HOXC9P31274 260 aa8.93□□□□□ -0.98
TRIM55-203ENST00000350034 GNAI1P63096 354 aa8.93□□□□□ -0.98
TRIM55-203ENST00000350034 ESCO1Q5FWF5 840 aa8.93□□□□□ -0.98
TRIM55-203ENST00000350034 ABTB2Q8N961 1025 aa8.93□□□□□ -0.98
TRIM55-203ENST00000350034 DCCP43146 1447 aa8.93□□□□□ -0.98
TRIM55-203ENST00000350034 C1orf167Q5SNV9 1468 aa8.93□□□□□ -0.98
TRIM55-203ENST00000350034 NFAT5O94916 1531 aa8.93□□□□□ -0.98
TRIM55-203ENST00000350034 AMPHP49418 695 aa8.92□□□□□ -0.98
TRIM55-203ENST00000350034 ALDH1L2Q3SY69 923 aa8.92□□□□□ -0.98
TRIM55-203ENST00000350034 CENPQQ7L2Z9 268 aaPredicted RBP8.92□□□□□ -0.98
TRIM55-203ENST00000350034 PANK1Q8TE04 598 aa8.92□□□□□ -0.98
TRIM55-203ENST00000350034 SSH1Q8WYL5 1049 aa8.92□□□□□ -0.98
TRIM55-203ENST00000350034 CFAP44Q96MT7 982 aa8.92□□□□□ -0.98
TRIM55-203ENST00000350034 ORAI2Q96SN7 254 aa8.92□□□□□ -0.98
TRIM55-203ENST00000350034 EYA1Q99502 592 aa8.92□□□□□ -0.98
TRIM55-203ENST00000350034 THUMPD2Q9BTF0 503 aaKnown RBP8.92□□□□□ -0.98
TRIM55-203ENST00000350034 SLIT3O75094 1523 aa8.91□□□□□ -0.98
TRIM55-203ENST00000350034 TMEM94Q12767 1356 aa8.91□□□□□ -0.98
TRIM55-203ENST00000350034 USP19O94966 1318 aa8.91□□□□□ -0.98
TRIM55-203ENST00000350034 TCERG1O14776 1098 aaKnown RBP8.91□□□□□ -0.98
TRIM55-203ENST00000350034 VAMP4O75379 141 aa8.91□□□□□ -0.98
TRIM55-203ENST00000350034 RLBP1P12271 317 aa8.91□□□□□ -0.98
TRIM55-203ENST00000350034 PSME1Q06323 249 aa8.91□□□□□ -0.98
TRIM55-203ENST00000350034 ZKSCAN2Q63HK3 967 aa8.91□□□□□ -0.98
TRIM55-203ENST00000350034 MBIPQ9NS73 344 aa8.91□□□□□ -0.98
TRIM55-203ENST00000350034 CHL1O00533 1208 aa8.9□□□□□ -0.98
TRIM55-203ENST00000350034 SOX12O15370 315 aa8.9□□□□□ -0.98
TRIM55-203ENST00000350034 PAK3O75914 559 aaPredicted RBP8.9□□□□□ -0.98
TRIM55-203ENST00000350034 MS4A1P11836 297 aa8.9□□□□□ -0.98
TRIM55-203ENST00000350034 NUTM2GQ5VZR2 741 aa8.9□□□□□ -0.98
TRIM55-203ENST00000350034 C14orf37Q86TY3 774 aa8.9□□□□□ -0.98
TRIM55-203ENST00000350034 KCNH5Q8NCM2 988 aa8.9□□□□□ -0.98
TRIM55-203ENST00000350034 IP6K1Q92551 441 aa8.9□□□□□ -0.98
TRIM55-203ENST00000350034 BCL2L13Q9BXK5 485 aa8.9□□□□□ -0.98
TRIM55-203ENST00000350034 SMC4Q9NTJ3 1288 aa8.9□□□□□ -0.98
TRIM55-203ENST00000350034 TNNQ9UQP3 1299 aa8.9□□□□□ -0.98
TRIM55-203ENST00000350034 COG6Q9Y2V7 657 aa8.9□□□□□ -0.98
TRIM55-203ENST00000350034 CRB1P82279 1406 aa8.89□□□□□ -0.99
TRIM55-203ENST00000350034 KIF1AQ12756 1690 aa8.89□□□□□ -0.99
TRIM55-203ENST00000350034 FAM83GA6ND36 823 aa8.89□□□□□ -0.99
TRIM55-203ENST00000350034 FOXO3O43524 673 aa8.89□□□□□ -0.99
TRIM55-203ENST00000350034 HTATSF1O43719 755 aaKnown RBP8.89□□□□□ -0.99
TRIM55-203ENST00000350034 CANXP27824 592 aaKnown RBP8.89□□□□□ -0.99
TRIM55-203ENST00000350034 MTHFSDQ2M296 383 aaKnown RBP8.89□□□□□ -0.99
TRIM55-203ENST00000350034 FRAT1Q92837 279 aaPredicted RBP8.89□□□□□ -0.99
TRIM55-203ENST00000350034 CLUAP1Q96AJ1 413 aa8.89□□□□□ -0.99
TRIM55-203ENST00000350034 PHRF1Q9P1Y6 1649 aaKnown RBP8.89□□□□□ -0.99
TRIM55-203ENST00000350034 TRPM3Q9HCF6 1732 aaPredicted RBP8.88□□□□□ -0.99
TRIM55-203ENST00000350034 KIF16BQ96L93 1317 aa8.88□□□□□ -0.99
TRIM55-203ENST00000350034 TRIM27P14373 513 aa8.88□□□□□ -0.99
TRIM55-203ENST00000350034 DCTN1Q14203 1278 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms