RNA–Protein interactions for RNA: ENST00000350028.4

SAMM50-201, Transcript of SAMM50 sorting and assembly machinery component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SAMM50, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SAMM50-201ENST00000350028 RGPD8O14715 1765 aaPredicted RBP21.46■■□□□ 1.03
SAMM50-201ENST00000350028 PMFBP1Q8TBY8 1022 aa21.46■■□□□ 1.03
SAMM50-201ENST00000350028 BCL2L13Q9BXK5 485 aa21.46■■□□□ 1.03
SAMM50-201ENST00000350028 MSH5O43196 834 aa21.45■■□□□ 1.02
SAMM50-201ENST00000350028 BACH2Q9BYV9 841 aa21.45■■□□□ 1.02
SAMM50-201ENST00000350028 FMN2Q9NZ56 1722 aa21.45■■□□□ 1.02
SAMM50-201ENST00000350028 CHD2O14647 1828 aaKnown RBP21.45■■□□□ 1.02
SAMM50-201ENST00000350028 ZNF428Q96B54 188 aa21.43■■□□□ 1.02
SAMM50-201ENST00000350028 SMC4Q9NTJ3 1288 aa21.43■■□□□ 1.02
SAMM50-201ENST00000350028 EIF4A2Q14240 407 aaKnown RBP21.43■■□□□ 1.02
SAMM50-201ENST00000350028 GNAI1P63096 354 aa21.42■■□□□ 1.02
SAMM50-201ENST00000350028 RLBP1P12271 317 aa21.41■■□□□ 1.02
SAMM50-201ENST00000350028 ALDH1L2Q3SY69 923 aa21.41■■□□□ 1.02
SAMM50-201ENST00000350028 DZIP1LQ8IYY4 767 aaKnown RBP21.41■■□□□ 1.02
SAMM50-201ENST00000350028 SSH1Q8WYL5 1049 aa21.41■■□□□ 1.02
SAMM50-201ENST00000350028 IFT57Q9NWB7 429 aa21.41■■□□□ 1.02
SAMM50-201ENST00000350028 ANP32AP39687 249 aaKnown RBP21.41■■□□□ 1.02
SAMM50-201ENST00000350028 PEAK1Q9H792 1746 aa21.4■■□□□ 1.02
SAMM50-201ENST00000350028 DLG5Q8TDM6 1919 aa21.4■■□□□ 1.02
SAMM50-201ENST00000350028 TNNQ9UQP3 1299 aa21.4■■□□□ 1.02
SAMM50-201ENST00000350028 IGHDP01880 384 aa21.39■■□□□ 1.01
SAMM50-201ENST00000350028 MVPQ14764 893 aaKnown RBP21.39■■□□□ 1.01
SAMM50-201ENST00000350028 ANP32EQ9BTT0 268 aa21.39■■□□□ 1.01
SAMM50-201ENST00000350028 ZNF853P0CG23 659 aa21.38■■□□□ 1.01
SAMM50-201ENST00000350028 FTSJ3Q8IY81 847 aaKnown RBP21.38■■□□□ 1.01
SAMM50-201ENST00000350028 KIF16BQ96L93 1317 aa21.38■■□□□ 1.01
SAMM50-201ENST00000350028 IPO8O15397 1037 aaKnown RBP21.38■■□□□ 1.01
SAMM50-201ENST00000350028 RGPD1P0DJD0 1748 aa21.37■■□□□ 1.01
SAMM50-201ENST00000350028 SBNO1A3KN83 1393 aa21.37■■□□□ 1.01
SAMM50-201ENST00000350028 BRPF1P55201 1214 aaPredicted RBP21.37■■□□□ 1.01
SAMM50-201ENST00000350028 SULT6B1Q6IMI4 303 aa21.37■■□□□ 1.01
SAMM50-201ENST00000350028 SKAP1Q86WV1 359 aa21.37■■□□□ 1.01
SAMM50-201ENST00000350028 LAS1LQ9Y4W2 734 aaKnown RBP21.37■■□□□ 1.01
SAMM50-201ENST00000350028 PIK3C2AO00443 1686 aa21.36■■□□□ 1.01
SAMM50-201ENST00000350028 ATF7IPQ6VMQ6 1270 aa21.36■■□□□ 1.01
SAMM50-201ENST00000350028 MAP3K19Q56UN5 1328 aa21.36■■□□□ 1.01
SAMM50-201ENST00000350028 HSP90AB2PQ58FF8 381 aa21.35■■□□□ 1.01
SAMM50-201ENST00000350028 USP54Q70EL1 1684 aa21.35■■□□□ 1.01
SAMM50-201ENST00000350028 FLT4P35916 1363 aa21.35■■□□□ 1.01
SAMM50-201ENST00000350028 CFAP44Q96MT7 982 aa21.35■■□□□ 1.01
SAMM50-201ENST00000350028 NOB1Q9ULX3 412 aaKnown RBP21.35■■□□□ 1.01
SAMM50-201ENST00000350028 ARHGEF10O15013 1369 aa21.34■■□□□ 1.01
SAMM50-201ENST00000350028 TRIM27P14373 513 aa21.34■■□□□ 1.01
SAMM50-201ENST00000350028 THUMPD2Q9BTF0 503 aaKnown RBP21.34■■□□□ 1.01
SAMM50-201ENST00000350028 ERICH6Q7L0X2 663 aa21.33■■□□□ 1.01
SAMM50-201ENST00000350028 VAMP4O75379 141 aa21.32■■□□□ 1
SAMM50-201ENST00000350028 NLRP6P59044 892 aa21.32■■□□□ 1
SAMM50-201ENST00000350028 AEBP1Q8IUX7 1158 aa21.32■■□□□ 1
SAMM50-201ENST00000350028 RWDD1Q9H446 243 aaPredicted RBP21.32■■□□□ 1
SAMM50-201ENST00000350028 DDX19BQ9UMR2 479 aa21.32■■□□□ 1
SAMM50-201ENST00000350028 PCDHB15Q9Y5E8 787 aa21.32■■□□□ 1
SAMM50-201ENST00000350028 KIF24Q5T7B8 1368 aa21.32■■□□□ 1
SAMM50-201ENST00000350028 STRCP1A6NGW2 1772 aa21.32■■□□□ 1
SAMM50-201ENST00000350028 IPO9Q96P70 1041 aaKnown RBP21.32■■□□□ 1
SAMM50-201ENST00000350028 MBIPQ9NS73 344 aa21.32■■□□□ 1
SAMM50-201ENST00000350028 SOX12O15370 315 aa21.31■■□□□ 1
SAMM50-201ENST00000350028 AMPHP49418 695 aa21.31■■□□□ 1
SAMM50-201ENST00000350028 PHF8Q9UPP1 1060 aa21.31■■□□□ 1
SAMM50-201ENST00000350028 FAM161AQ3B820 660 aa21.3■■□□□ 1
SAMM50-201ENST00000350028 NWD1Q149M9 1564 aa21.3■■□□□ 1
SAMM50-201ENST00000350028 ADGRL3Q9HAR2 1447 aa21.29■■□□□ 1
SAMM50-201ENST00000350028 RGS3P49796 1198 aa21.29■■□□□ 1
SAMM50-201ENST00000350028 ARHGAP45Q92619 1136 aa21.29■■□□□ 1
SAMM50-201ENST00000350028 MYT1Q01538 1121 aa21.28■■□□□ 1
SAMM50-201ENST00000350028 MARF1Q9Y4F3 1742 aaKnown RBP21.28■■□□□ 1
SAMM50-201ENST00000350028 FAM83GA6ND36 823 aa21.27■■□□□ 1
SAMM50-201ENST00000350028 MRPL50Q8N5N7 158 aaKnown RBP21.27■■□□□ 1
SAMM50-201ENST00000350028 ITPRIPQ8IWB1 547 aa21.26■□□□□ 0.99
SAMM50-201ENST00000350028 ABTB2Q8N961 1025 aa21.26■□□□□ 0.99
SAMM50-201ENST00000350028 KDRP35968 1356 aa21.26■□□□□ 0.99
SAMM50-201ENST00000350028 TWISTNBQ3B726 338 aaPredicted RBP21.26■□□□□ 0.99
SAMM50-201ENST00000350028 NOP58Q9Y2X3 529 aaKnown RBP21.26■□□□□ 0.99
SAMM50-201ENST00000350028 IGSF1Q8N6C5 1336 aa21.25■□□□□ 0.99
SAMM50-201ENST00000350028 DCTN1Q14203 1278 aa21.25■□□□□ 0.99
SAMM50-201ENST00000350028 TMEM57Q8N5G2 664 aa21.25■□□□□ 0.99
SAMM50-201ENST00000350028 TSPYL6Q8N831 410 aa21.25■□□□□ 0.99
SAMM50-201ENST00000350028 RBM33Q96EV2 1170 aaKnown RBP21.25■□□□□ 0.99
SAMM50-201ENST00000350028 HAP1P54257 671 aaPredicted RBP21.24■□□□□ 0.99
SAMM50-201ENST00000350028 PAK3O75914 559 aaPredicted RBP21.24■□□□□ 0.99
SAMM50-201ENST00000350028 C8orf34Q49A92 452 aa21.24■□□□□ 0.99
SAMM50-201ENST00000350028 CHMP4BQ9H444 224 aaKnown RBP21.24■□□□□ 0.99
SAMM50-201ENST00000350028 CHL1O00533 1208 aa21.23■□□□□ 0.99
SAMM50-201ENST00000350028 HDAC1Q13547 482 aaPredicted RBP21.23■□□□□ 0.99
SAMM50-201ENST00000350028 NPM2Q86SE8 214 aaKnown RBP21.23■□□□□ 0.99
SAMM50-201ENST00000350028 EYA1Q99502 592 aa21.23■□□□□ 0.99
SAMM50-201ENST00000350028 HOXC9P31274 260 aa21.22■□□□□ 0.99
SAMM50-201ENST00000350028 C8orf58Q8NAV2 365 aa21.22■□□□□ 0.99
SAMM50-201ENST00000350028 ZBTB47Q9UFB7 747 aaPredicted RBP21.22■□□□□ 0.99
SAMM50-201ENST00000350028 ZBTB40Q9NUA8 1239 aa21.21■□□□□ 0.99
SAMM50-201ENST00000350028 NUTM2GQ5VZR2 741 aa21.21■□□□□ 0.99
SAMM50-201ENST00000350028 GAS2L2Q8NHY3 880 aa21.21■□□□□ 0.99
SAMM50-201ENST00000350028 PDZRN3Q9UPQ7 1066 aa21.21■□□□□ 0.99
SAMM50-201ENST00000350028 RTL1A6NKG5 1358 aa21.21■□□□□ 0.99
SAMM50-201ENST00000350028 KIAA0232Q92628 1395 aa21.2■□□□□ 0.98
SAMM50-201ENST00000350028 ELL2O00472 640 aaPredicted RBP21.2■□□□□ 0.98
SAMM50-201ENST00000350028 PSME1Q06323 249 aa21.19■□□□□ 0.98
SAMM50-201ENST00000350028 MTHFSDQ2M296 383 aaKnown RBP21.19■□□□□ 0.98
SAMM50-201ENST00000350028 ESCO1Q5FWF5 840 aa21.19■□□□□ 0.98
SAMM50-201ENST00000350028 ZNF335Q9H4Z2 1342 aaPredicted RBP21.19■□□□□ 0.98
SAMM50-201ENST00000350028 HTATSF1O43719 755 aaKnown RBP21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms