RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 AKAP12Q02952 1782 aa24.65■■□□□ 1.54
COL9A3-201ENST00000343916 USP19O94966 1318 aa24.65■■□□□ 1.54
COL9A3-201ENST00000343916 KIF16BQ96L93 1317 aa24.65■■□□□ 1.54
COL9A3-201ENST00000343916 ITSN1Q15811 1721 aa24.65■■□□□ 1.54
COL9A3-201ENST00000343916 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.65■■□□□ 1.54
COL9A3-201ENST00000343916 DAXXQ9UER7 740 aaPredicted RBP24.65■■□□□ 1.54
COL9A3-201ENST00000343916 ACEP12821 1306 aa24.65■■□□□ 1.54
COL9A3-201ENST00000343916 TSPYL6Q8N831 410 aa24.64■■□□□ 1.54
COL9A3-201ENST00000343916 ELL2O00472 640 aaPredicted RBP24.64■■□□□ 1.53
COL9A3-201ENST00000343916 PLEKHG1Q9ULL1 1385 aa24.63■■□□□ 1.53
COL9A3-201ENST00000343916 FAM83GA6ND36 823 aa24.63■■□□□ 1.53
COL9A3-201ENST00000343916 ALDH1L2Q3SY69 923 aa24.62■■□□□ 1.53
COL9A3-201ENST00000343916 IPO8O15397 1037 aaKnown RBP24.62■■□□□ 1.53
COL9A3-201ENST00000343916 TTC21BQ7Z4L5 1316 aa24.62■■□□□ 1.53
COL9A3-201ENST00000343916 MBIPQ9NS73 344 aa24.61■■□□□ 1.53
COL9A3-201ENST00000343916 PTPRUQ92729 1446 aa24.61■■□□□ 1.53
COL9A3-201ENST00000343916 VAMP4O75379 141 aa24.6■■□□□ 1.53
COL9A3-201ENST00000343916 DCTN1Q14203 1278 aa24.6■■□□□ 1.53
COL9A3-201ENST00000343916 AEBP1Q8IUX7 1158 aa24.6■■□□□ 1.53
COL9A3-201ENST00000343916 ZBTB40Q9NUA8 1239 aa24.6■■□□□ 1.53
COL9A3-201ENST00000343916 SOX12O15370 315 aa24.59■■□□□ 1.53
COL9A3-201ENST00000343916 FER1L4A9Z1Z3 1794 aa24.59■■□□□ 1.53
COL9A3-201ENST00000343916 GNAI1P63096 354 aa24.59■■□□□ 1.53
COL9A3-201ENST00000343916 IFT57Q9NWB7 429 aa24.59■■□□□ 1.53
COL9A3-201ENST00000343916 EID1Q9Y6B2 187 aa24.58■■□□□ 1.53
COL9A3-201ENST00000343916 CALD1Q05682 793 aaKnown RBP24.58■■□□□ 1.53
COL9A3-201ENST00000343916 HDAC1Q13547 482 aaPredicted RBP24.58■■□□□ 1.53
COL9A3-201ENST00000343916 DLG5Q8TDM6 1919 aa24.57■■□□□ 1.52
COL9A3-201ENST00000343916 ZNF853P0CG23 659 aa24.57■■□□□ 1.52
COL9A3-201ENST00000343916 EIF4A2Q14240 407 aaKnown RBP24.57■■□□□ 1.52
COL9A3-201ENST00000343916 AMOTL2Q9Y2J4 779 aa24.57■■□□□ 1.52
COL9A3-201ENST00000343916 PLEKHG3A1L390 1219 aa24.56■■□□□ 1.52
COL9A3-201ENST00000343916 SULT6B1Q6IMI4 303 aa24.56■■□□□ 1.52
COL9A3-201ENST00000343916 USP6P35125 1406 aa24.55■■□□□ 1.52
COL9A3-201ENST00000343916 ZNF428Q96B54 188 aa24.55■■□□□ 1.52
COL9A3-201ENST00000343916 MRPL50Q8N5N7 158 aaKnown RBP24.54■■□□□ 1.52
COL9A3-201ENST00000343916 C8orf58Q8NAV2 365 aa24.54■■□□□ 1.52
COL9A3-201ENST00000343916 CFAP44Q96MT7 982 aa24.54■■□□□ 1.52
COL9A3-201ENST00000343916 NRKQ7Z2Y5 1582 aa24.54■■□□□ 1.52
COL9A3-201ENST00000343916 HSP90AB2PQ58FF8 381 aa24.54■■□□□ 1.52
COL9A3-201ENST00000343916 BRPF1P55201 1214 aaPredicted RBP24.53■■□□□ 1.52
COL9A3-201ENST00000343916 TWISTNBQ3B726 338 aaPredicted RBP24.53■■□□□ 1.52
COL9A3-201ENST00000343916 OVOS2A0A0J9YW53 1432 aa24.53■■□□□ 1.52
COL9A3-201ENST00000343916 OVOS2Q6IE36 1432 aa24.53■■□□□ 1.52
COL9A3-201ENST00000343916 TOPAZ1Q8N9V7 1692 aa24.53■■□□□ 1.52
COL9A3-201ENST00000343916 LMOD3Q0VAK6 560 aa24.53■■□□□ 1.52
COL9A3-201ENST00000343916 SMC5Q8IY18 1101 aa24.51■■□□□ 1.51
COL9A3-201ENST00000343916 C1orf115Q9H7X2 142 aa24.49■■□□□ 1.51
COL9A3-201ENST00000343916 USP35Q9P2H5 1018 aa24.49■■□□□ 1.51
COL9A3-201ENST00000343916 ZBTB7BO15156 539 aaPredicted RBP24.47■■□□□ 1.51
COL9A3-201ENST00000343916 NFKBIBQ15653 356 aa24.47■■□□□ 1.51
COL9A3-201ENST00000343916 PEAK1Q9H792 1746 aa24.47■■□□□ 1.51
COL9A3-201ENST00000343916 MCM10Q7L590 875 aa24.46■■□□□ 1.51
COL9A3-201ENST00000343916 UPF2Q9HAU5 1272 aaKnown RBP24.46■■□□□ 1.51
COL9A3-201ENST00000343916 TBX22Q9Y458 520 aa24.46■■□□□ 1.51
COL9A3-201ENST00000343916 SLIT1O75093 1534 aa24.46■■□□□ 1.51
COL9A3-201ENST00000343916 KRT24Q2M2I5 525 aa24.46■■□□□ 1.51
COL9A3-201ENST00000343916 ARHGAP45Q92619 1136 aa24.46■■□□□ 1.51
COL9A3-201ENST00000343916 PTCH1Q13635 1447 aa24.46■■□□□ 1.51
COL9A3-201ENST00000343916 ARHGAP23Q9P227 1491 aa24.46■■□□□ 1.51
COL9A3-201ENST00000343916 SSH2Q76I76 1423 aa24.45■■□□□ 1.5
COL9A3-201ENST00000343916 NGDNQ8NEJ9 315 aaKnown RBP24.44■■□□□ 1.5
COL9A3-201ENST00000343916 TBC1D32Q96NH3 1257 aa24.44■■□□□ 1.5
COL9A3-201ENST00000343916 LNPKQ9C0E8 428 aa24.44■■□□□ 1.5
COL9A3-201ENST00000343916 USP31Q70CQ4 1352 aa24.44■■□□□ 1.5
COL9A3-201ENST00000343916 MAP3K19Q56UN5 1328 aa24.43■■□□□ 1.5
COL9A3-201ENST00000343916 THEMISQ8N1K5 641 aaPredicted RBP24.43■■□□□ 1.5
COL9A3-201ENST00000343916 RGPD8O14715 1765 aaPredicted RBP24.42■■□□□ 1.5
COL9A3-201ENST00000343916 ABCC4O15439 1325 aa24.42■■□□□ 1.5
COL9A3-201ENST00000343916 NALCNQ8IZF0 1738 aa24.42■■□□□ 1.5
COL9A3-201ENST00000343916 NUCB1Q02818 461 aa24.42■■□□□ 1.5
COL9A3-201ENST00000343916 IL27Q8NEV9 243 aa24.42■■□□□ 1.5
COL9A3-201ENST00000343916 PIK3R4Q99570 1358 aa24.41■■□□□ 1.5
COL9A3-201ENST00000343916 RIMS1Q86UR5 1692 aaKnown RBP24.4■■□□□ 1.5
COL9A3-201ENST00000343916 DIP2AQ14689 1571 aa24.4■■□□□ 1.5
COL9A3-201ENST00000343916 MFAP1P55081 439 aaKnown RBP24.39■■□□□ 1.5
COL9A3-201ENST00000343916 CHD1LQ86WJ1 897 aa24.39■■□□□ 1.49
COL9A3-201ENST00000343916 TTC21AQ8NDW8 1320 aa24.38■■□□□ 1.49
COL9A3-201ENST00000343916 FOXO3O43524 673 aa24.38■■□□□ 1.49
COL9A3-201ENST00000343916 KCNA6P17658 529 aa24.38■■□□□ 1.49
COL9A3-201ENST00000343916 SIRT2Q8IXJ6 389 aa24.38■■□□□ 1.49
COL9A3-201ENST00000343916 BECN1Q14457 450 aa24.37■■□□□ 1.49
COL9A3-201ENST00000343916 CHL1O00533 1208 aa24.37■■□□□ 1.49
COL9A3-201ENST00000343916 NUTM2GQ5VZR2 741 aa24.37■■□□□ 1.49
COL9A3-201ENST00000343916 ANKRD45Q5TZF3 282 aa24.36■■□□□ 1.49
COL9A3-201ENST00000343916 MIS18AQ9NYP9 233 aa24.36■■□□□ 1.49
COL9A3-201ENST00000343916 RGPD1P0DJD0 1748 aa24.36■■□□□ 1.49
COL9A3-201ENST00000343916 API5Q9BZZ5 524 aaKnown RBP24.36■■□□□ 1.49
COL9A3-201ENST00000343916 SLKQ9H2G2 1235 aaPredicted RBP24.36■■□□□ 1.49
COL9A3-201ENST00000343916 ADAMTSL3P82987 1691 aa24.35■■□□□ 1.49
COL9A3-201ENST00000343916 FRAT2O75474 233 aaPredicted RBP24.35■■□□□ 1.49
COL9A3-201ENST00000343916 AMPHP49418 695 aa24.35■■□□□ 1.49
COL9A3-201ENST00000343916 CHMP4BQ9H444 224 aaKnown RBP24.34■■□□□ 1.49
COL9A3-201ENST00000343916 FLT4P35916 1363 aa24.34■■□□□ 1.49
COL9A3-201ENST00000343916 MTHFSDQ2M296 383 aaKnown RBP24.34■■□□□ 1.49
COL9A3-201ENST00000343916 RTN4Q9NQC3 1192 aaKnown RBP24.34■■□□□ 1.49
COL9A3-201ENST00000343916 NLRP6P59044 892 aa24.33■■□□□ 1.49
COL9A3-201ENST00000343916 SBNO1A3KN83 1393 aa24.33■■□□□ 1.49
COL9A3-201ENST00000343916 TBC1D2Q9BYX2 928 aa24.33■■□□□ 1.48
COL9A3-201ENST00000343916 C22orf23Q9BZE7 217 aa24.33■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms