RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 USP31Q70CQ4 1352 aa19.38■□□□□ 0.69
TPM3-208ENST00000341485 RARSP54136 660 aaKnown RBP19.37■□□□□ 0.69
TPM3-208ENST00000341485 SOX12O15370 315 aa19.37■□□□□ 0.69
TPM3-208ENST00000341485 NLRP6P59044 892 aa19.37■□□□□ 0.69
TPM3-208ENST00000341485 ORAI2Q96SN7 254 aa19.37■□□□□ 0.69
TPM3-208ENST00000341485 ABTB2Q8N961 1025 aa19.36■□□□□ 0.69
TPM3-208ENST00000341485 DCCP43146 1447 aa19.36■□□□□ 0.69
TPM3-208ENST00000341485 PANK1Q8TE04 598 aa19.36■□□□□ 0.69
TPM3-208ENST00000341485 PLEKHF1Q96S99 279 aa19.36■□□□□ 0.69
TPM3-208ENST00000341485 C1orf167Q5SNV9 1468 aa19.35■□□□□ 0.69
TPM3-208ENST00000341485 CANXP27824 592 aaKnown RBP19.35■□□□□ 0.69
TPM3-208ENST00000341485 MSH6P52701 1360 aa19.34■□□□□ 0.69
TPM3-208ENST00000341485 PNNQ9H307 717 aaKnown RBP19.34■□□□□ 0.69
TPM3-208ENST00000341485 KIF1AQ12756 1690 aa19.34■□□□□ 0.69
TPM3-208ENST00000341485 NUTM2GQ5VZR2 741 aa19.34■□□□□ 0.69
TPM3-208ENST00000341485 COG6Q9Y2V7 657 aa19.34■□□□□ 0.69
TPM3-208ENST00000341485 MYH16Q9H6N6 1097 aa19.33■□□□□ 0.69
TPM3-208ENST00000341485 CADPS2Q86UW7 1296 aa19.32■□□□□ 0.68
TPM3-208ENST00000341485 FRAT1Q92837 279 aaPredicted RBP19.32■□□□□ 0.68
TPM3-208ENST00000341485 ZNF335Q9H4Z2 1342 aaPredicted RBP19.32■□□□□ 0.68
TPM3-208ENST00000341485 MAPK8IP3Q9UPT6 1336 aa19.32■□□□□ 0.68
TPM3-208ENST00000341485 MST1RQ04912 1400 aa19.32■□□□□ 0.68
TPM3-208ENST00000341485 FOXO3O43524 673 aa19.32■□□□□ 0.68
TPM3-208ENST00000341485 IGHDP01880 384 aa19.32■□□□□ 0.68
TPM3-208ENST00000341485 CLUAP1Q96AJ1 413 aa19.31■□□□□ 0.68
TPM3-208ENST00000341485 USP54Q70EL1 1684 aa19.31■□□□□ 0.68
TPM3-208ENST00000341485 IL13P35225 146 aa19.31■□□□□ 0.68
TPM3-208ENST00000341485 TMPOP42166 694 aaKnown RBP19.3■□□□□ 0.68
TPM3-208ENST00000341485 NEFMP07197 916 aa19.29■□□□□ 0.68
TPM3-208ENST00000341485 TNNQ9UQP3 1299 aa19.29■□□□□ 0.68
TPM3-208ENST00000341485 XIRP1Q702N8 1843 aaKnown RBP19.29■□□□□ 0.68
TPM3-208ENST00000341485 LRRC7Q96NW7 1537 aa19.29■□□□□ 0.68
TPM3-208ENST00000341485 MARF1Q9Y4F3 1742 aaKnown RBP19.29■□□□□ 0.68
TPM3-208ENST00000341485 FCHSD2O94868 740 aa19.29■□□□□ 0.68
TPM3-208ENST00000341485 XPCQ01831 940 aaPredicted RBP19.29■□□□□ 0.68
TPM3-208ENST00000341485 BCL2L13Q9BXK5 485 aa19.29■□□□□ 0.68
TPM3-208ENST00000341485 TRIM35Q9UPQ4 493 aa19.29■□□□□ 0.68
TPM3-208ENST00000341485 RLBP1P12271 317 aa19.28■□□□□ 0.68
TPM3-208ENST00000341485 RGS3P49796 1198 aa19.28■□□□□ 0.68
TPM3-208ENST00000341485 FAM161AQ3B820 660 aa19.28■□□□□ 0.68
TPM3-208ENST00000341485 C8orf34Q49A92 452 aa19.28■□□□□ 0.68
TPM3-208ENST00000341485 MAP3K19Q56UN5 1328 aa19.28■□□□□ 0.68
TPM3-208ENST00000341485 PEAK1Q9H792 1746 aa19.28■□□□□ 0.68
TPM3-208ENST00000341485 AMPHP49418 695 aa19.28■□□□□ 0.68
TPM3-208ENST00000341485 KRT28Q7Z3Y7 464 aa19.28■□□□□ 0.68
TPM3-208ENST00000341485 SBNO1A3KN83 1393 aa19.27■□□□□ 0.68
TPM3-208ENST00000341485 HMOX1P09601 288 aa19.26■□□□□ 0.67
TPM3-208ENST00000341485 FLT4P35916 1363 aa19.26■□□□□ 0.67
TPM3-208ENST00000341485 PRKAR2BP31323 418 aa19.26■□□□□ 0.67
TPM3-208ENST00000341485 EIF4A2Q14240 407 aaKnown RBP19.26■□□□□ 0.67
TPM3-208ENST00000341485 TSR2Q969E8 191 aaKnown RBP19.26■□□□□ 0.67
TPM3-208ENST00000341485 RSPH6AQ9H0K4 717 aa19.26■□□□□ 0.67
TPM3-208ENST00000341485 HSP90AB2PQ58FF8 381 aa19.25■□□□□ 0.67
TPM3-208ENST00000341485 LMOD2Q6P5Q4 547 aa19.25■□□□□ 0.67
TPM3-208ENST00000341485 NBR1Q14596 966 aa19.24■□□□□ 0.67
TPM3-208ENST00000341485 TRPM3Q9HCF6 1732 aaPredicted RBP19.23■□□□□ 0.67
TPM3-208ENST00000341485 CT47B1P0C2W7 299 aaPredicted RBP19.23■□□□□ 0.67
TPM3-208ENST00000341485 IL16Q14005 1332 aa19.23■□□□□ 0.67
TPM3-208ENST00000341485 AAMPQ13685 434 aa19.23■□□□□ 0.67
TPM3-208ENST00000341485 EXOSC9Q06265 439 aaKnown RBP19.22■□□□□ 0.67
TPM3-208ENST00000341485 KCNH5Q8NCM2 988 aa19.22■□□□□ 0.67
TPM3-208ENST00000341485 RIPK4P57078 832 aa19.21■□□□□ 0.67
TPM3-208ENST00000341485 KIF24Q5T7B8 1368 aa19.21■□□□□ 0.67
TPM3-208ENST00000341485 DDRGK1Q96HY6 314 aa19.21■□□□□ 0.67
TPM3-208ENST00000341485 PCDHB15Q9Y5E8 787 aa19.21■□□□□ 0.67
TPM3-208ENST00000341485 NPHP3Q7Z494 1330 aa19.2■□□□□ 0.66
TPM3-208ENST00000341485 VIRMAQ69YN4 1812 aaKnown RBP19.2■□□□□ 0.66
TPM3-208ENST00000341485 PLEKHG5O94827 1062 aa19.2■□□□□ 0.66
TPM3-208ENST00000341485 HOXC9P31274 260 aa19.2■□□□□ 0.66
TPM3-208ENST00000341485 LTN1O94822 1766 aa19.19■□□□□ 0.66
TPM3-208ENST00000341485 ZKSCAN2Q63HK3 967 aa19.19■□□□□ 0.66
TPM3-208ENST00000341485 SULT6B1Q6IMI4 303 aa19.18■□□□□ 0.66
TPM3-208ENST00000341485 DDX17Q92841 729 aaKnown RBP19.18■□□□□ 0.66
TPM3-208ENST00000341485 RTL1A6NKG5 1358 aa19.18■□□□□ 0.66
TPM3-208ENST00000341485 NFAT5O94916 1531 aa19.18■□□□□ 0.66
TPM3-208ENST00000341485 ZBTB7CA1YPR0 619 aa19.18■□□□□ 0.66
TPM3-208ENST00000341485 MVPQ14764 893 aaKnown RBP19.18■□□□□ 0.66
TPM3-208ENST00000341485 SMC4Q9NTJ3 1288 aa19.17■□□□□ 0.66
TPM3-208ENST00000341485 RGPD1P0DJD0 1748 aa19.17■□□□□ 0.66
TPM3-208ENST00000341485 DZIP1LQ8IYY4 767 aaKnown RBP19.16■□□□□ 0.66
TPM3-208ENST00000341485 SSH1Q8WYL5 1049 aa19.16■□□□□ 0.66
TPM3-208ENST00000341485 PHACTR3Q96KR7 559 aa19.16■□□□□ 0.66
TPM3-208ENST00000341485 SLIT3O75094 1523 aa19.16■□□□□ 0.66
TPM3-208ENST00000341485 ARHGEF10O15013 1369 aa19.16■□□□□ 0.66
TPM3-208ENST00000341485 NFE2L2Q16236 605 aa19.16■□□□□ 0.66
TPM3-208ENST00000341485 ALS2Q96Q42 1657 aa19.16■□□□□ 0.66
TPM3-208ENST00000341485 GCP02774 474 aa19.15■□□□□ 0.66
TPM3-208ENST00000341485 BRINP3Q76B58 766 aa19.15■□□□□ 0.66
TPM3-208ENST00000341485 AEBP1Q8IUX7 1158 aa19.15■□□□□ 0.66
TPM3-208ENST00000341485 SLAIN2Q9P270 581 aa19.15■□□□□ 0.66
TPM3-208ENST00000341485 USP19O94966 1318 aa19.15■□□□□ 0.66
TPM3-208ENST00000341485 FTSJ3Q8IY81 847 aaKnown RBP19.14■□□□□ 0.65
TPM3-208ENST00000341485 TRIM27P14373 513 aa19.13■□□□□ 0.65
TPM3-208ENST00000341485 IP6K1Q92551 441 aa19.13■□□□□ 0.65
TPM3-208ENST00000341485 LTV1Q96GA3 475 aaPredicted RBP19.13■□□□□ 0.65
TPM3-208ENST00000341485 LAS1LQ9Y4W2 734 aaKnown RBP19.13■□□□□ 0.65
TPM3-208ENST00000341485 TNS3Q68CZ2 1445 aa19.13■□□□□ 0.65
TPM3-208ENST00000341485 PXDNQ92626 1479 aa19.12■□□□□ 0.65
TPM3-208ENST00000341485 EYA1Q99502 592 aa19.12■□□□□ 0.65
TPM3-208ENST00000341485 RWDD1Q9H446 243 aaPredicted RBP19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms