RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 CUL7Q14999 1698 aa19.18■□□□□ 0.66
NPHP3-201ENST00000337331 LRPPRCP42704 1394 aaKnown RBP19.17■□□□□ 0.66
NPHP3-201ENST00000337331 AKAP17AQ02040 695 aaKnown RBP19.17■□□□□ 0.66
NPHP3-201ENST00000337331 GPATCH11Q8N954 259 aa19.17■□□□□ 0.66
NPHP3-201ENST00000337331 C16orf45Q96MC5 204 aaPredicted RBP19.17■□□□□ 0.66
NPHP3-201ENST00000337331 CWC15Q9P013 229 aaKnown RBP19.17■□□□□ 0.66
NPHP3-201ENST00000337331 SLC4A2P04920 1241 aa19.17■□□□□ 0.66
NPHP3-201ENST00000337331 SYNE3Q6ZMZ3 975 aa19.17■□□□□ 0.66
NPHP3-201ENST00000337331 RIC3Q7Z5B4 369 aa19.16■□□□□ 0.66
NPHP3-201ENST00000337331 KIAA0586Q9BVV6 1533 aa19.16■□□□□ 0.66
NPHP3-201ENST00000337331 ZNF500O60304 480 aaPredicted RBP19.16■□□□□ 0.66
NPHP3-201ENST00000337331 TXNDC2Q86VQ3 553 aa19.16■□□□□ 0.66
NPHP3-201ENST00000337331 RBM42Q9BTD8 480 aaKnown RBP19.16■□□□□ 0.66
NPHP3-201ENST00000337331 GRIN2AQ12879 1464 aa19.16■□□□□ 0.66
NPHP3-201ENST00000337331 CT47B1P0C2W7 299 aaPredicted RBP19.16■□□□□ 0.66
NPHP3-201ENST00000337331 FOSBP53539 338 aa19.16■□□□□ 0.66
NPHP3-201ENST00000337331 RAPGEF4Q8WZA2 1011 aa19.16■□□□□ 0.66
NPHP3-201ENST00000337331 CDK19Q9BWU1 502 aa19.16■□□□□ 0.66
NPHP3-201ENST00000337331 CWC22Q9HCG8 908 aaKnown RBP19.16■□□□□ 0.66
NPHP3-201ENST00000337331 ADCY5O95622 1261 aa19.15■□□□□ 0.66
NPHP3-201ENST00000337331 CCDC30Q5VVM6 783 aa19.15■□□□□ 0.66
NPHP3-201ENST00000337331 LRSAM1Q6UWE0 723 aa19.15■□□□□ 0.66
NPHP3-201ENST00000337331 SUPT6HQ7KZ85 1726 aaKnown RBP19.15■□□□□ 0.66
NPHP3-201ENST00000337331 ZBTB22O15209 634 aa19.15■□□□□ 0.66
NPHP3-201ENST00000337331 HOMER1Q86YM7 354 aa19.15■□□□□ 0.66
NPHP3-201ENST00000337331 NEUROD6Q96NK8 337 aa19.15■□□□□ 0.66
NPHP3-201ENST00000337331 TRDNQ13061 729 aa19.14■□□□□ 0.65
NPHP3-201ENST00000337331 EVA1CP58658 441 aa19.14■□□□□ 0.65
NPHP3-201ENST00000337331 GAS2L2Q8NHY3 880 aa19.14■□□□□ 0.65
NPHP3-201ENST00000337331 ARGLU1Q9NWB6 273 aaPredicted RBP19.14■□□□□ 0.65
NPHP3-201ENST00000337331 MAGI1Q96QZ7 1491 aaPredicted RBP19.14■□□□□ 0.65
NPHP3-201ENST00000337331 FBXW7Q969H0 707 aa19.14■□□□□ 0.65
NPHP3-201ENST00000337331 HECW1Q76N89 1606 aa19.13■□□□□ 0.65
NPHP3-201ENST00000337331 DHX29Q7Z478 1369 aaKnown RBP19.13■□□□□ 0.65
NPHP3-201ENST00000337331 PCF11O94913 1555 aaKnown RBP19.13■□□□□ 0.65
NPHP3-201ENST00000337331 NINLQ9Y2I6 1382 aa19.13■□□□□ 0.65
NPHP3-201ENST00000337331 CHD1LQ86WJ1 897 aa19.13■□□□□ 0.65
NPHP3-201ENST00000337331 TRIM29Q14134 588 aa19.13■□□□□ 0.65
NPHP3-201ENST00000337331 CCDC27Q2M243 656 aa19.13■□□□□ 0.65
NPHP3-201ENST00000337331 NOC3LQ8WTT2 800 aaKnown RBP19.13■□□□□ 0.65
NPHP3-201ENST00000337331 NLRP2Q9NX02 1062 aa19.13■□□□□ 0.65
NPHP3-201ENST00000337331 FIBPO43427 364 aa19.12■□□□□ 0.65
NPHP3-201ENST00000337331 AEBP2Q6ZN18 517 aaPredicted RBP19.12■□□□□ 0.65
NPHP3-201ENST00000337331 POLR3GO15318 223 aaPredicted RBP19.12■□□□□ 0.65
NPHP3-201ENST00000337331 GNAI2P04899 355 aa19.12■□□□□ 0.65
NPHP3-201ENST00000337331 SKIDA1Q1XH10 827 aa19.12■□□□□ 0.65
NPHP3-201ENST00000337331 CNTROBQ8N137 903 aa19.12■□□□□ 0.65
NPHP3-201ENST00000337331 KRT222Q8N1A0 295 aa19.12■□□□□ 0.65
NPHP3-201ENST00000337331 CCDC73Q6ZRK6 1079 aa19.12■□□□□ 0.65
NPHP3-201ENST00000337331 SMC5Q8IY18 1101 aa19.12■□□□□ 0.65
NPHP3-201ENST00000337331 GDPD2Q9HCC8 539 aa19.12■□□□□ 0.65
NPHP3-201ENST00000337331 OGFRQ9NZT2 677 aa19.11■□□□□ 0.65
NPHP3-201ENST00000337331 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.11■□□□□ 0.65
NPHP3-201ENST00000337331 IQGAP2Q13576 1575 aa19.11■□□□□ 0.65
NPHP3-201ENST00000337331 TMPOP42166 694 aaKnown RBP19.11■□□□□ 0.65
NPHP3-201ENST00000337331 BCL2L12Q9HB09 334 aa19.11■□□□□ 0.65
NPHP3-201ENST00000337331 ABCC5O15440 1437 aa19.11■□□□□ 0.65
NPHP3-201ENST00000337331 ABTB2Q8N961 1025 aa19.11■□□□□ 0.65
NPHP3-201ENST00000337331 MNS1Q8NEH6 495 aa19.11■□□□□ 0.65
NPHP3-201ENST00000337331 ZFP91Q96JP5 570 aaPredicted RBP19.11■□□□□ 0.65
NPHP3-201ENST00000337331 FSD1Q9BTV5 496 aa19.11■□□□□ 0.65
NPHP3-201ENST00000337331 MARCH6O60337 910 aa19.1■□□□□ 0.65
NPHP3-201ENST00000337331 TNNT1P13805 278 aa19.1■□□□□ 0.65
NPHP3-201ENST00000337331 MCM2P49736 904 aa19.1■□□□□ 0.65
NPHP3-201ENST00000337331 SLC52A1Q9NWF4 448 aa19.1■□□□□ 0.65
NPHP3-201ENST00000337331 PLEKHH2Q8IVE3 1493 aa19.1■□□□□ 0.65
NPHP3-201ENST00000337331 TMEM57Q8N5G2 664 aa19.1■□□□□ 0.65
NPHP3-201ENST00000337331 FEZ1Q99689 392 aa19.1■□□□□ 0.65
NPHP3-201ENST00000337331 HDGFL1Q5TGJ6 251 aa19.09■□□□□ 0.65
NPHP3-201ENST00000337331 GTF2A1P52655 376 aaPredicted RBP19.09■□□□□ 0.65
NPHP3-201ENST00000337331 JARID2Q92833 1246 aaPredicted RBP19.09■□□□□ 0.65
NPHP3-201ENST00000337331 RBM25P49756 843 aaKnown RBP19.09■□□□□ 0.65
NPHP3-201ENST00000337331 TSR1Q2NL82 804 aaKnown RBP19.08■□□□□ 0.65
NPHP3-201ENST00000337331 DEF6Q9H4E7 631 aa19.08■□□□□ 0.65
NPHP3-201ENST00000337331 NOL10Q9BSC4 688 aaKnown RBP19.08■□□□□ 0.64
NPHP3-201ENST00000337331 THUMPD2Q9BTF0 503 aaKnown RBP19.08■□□□□ 0.64
NPHP3-201ENST00000337331 PATL2C9JE40 543 aaKnown RBP19.08■□□□□ 0.64
NPHP3-201ENST00000337331 RAPGEF3O95398 923 aa19.08■□□□□ 0.64
NPHP3-201ENST00000337331 SYTL4Q96C24 671 aaPredicted RBP19.08■□□□□ 0.64
NPHP3-201ENST00000337331 NSD3Q9BZ95 1437 aa19.07■□□□□ 0.64
NPHP3-201ENST00000337331 TMX4Q9H1E5 349 aaPredicted RBP19.07■□□□□ 0.64
NPHP3-201ENST00000337331 NOL12Q9UGY1 213 aaKnown RBP eCLIP19.07■□□□□ 0.64
NPHP3-201ENST00000337331 V9GYY5 206 aaPredicted RBP19.07■□□□□ 0.64
NPHP3-201ENST00000337331 RARSP54136 660 aaKnown RBP19.07■□□□□ 0.64
NPHP3-201ENST00000337331 WASHC4Q2M389 1173 aa19.07■□□□□ 0.64
NPHP3-201ENST00000337331 HCLS1P14317 486 aaPredicted RBP19.07■□□□□ 0.64
NPHP3-201ENST00000337331 RALYLQ86SE5 291 aaKnown RBP19.07■□□□□ 0.64
NPHP3-201ENST00000337331 SDF4Q9BRK5 362 aa19.07■□□□□ 0.64
NPHP3-201ENST00000337331 TMX1Q9H3N1 280 aa19.07■□□□□ 0.64
NPHP3-201ENST00000337331 FCHSD2O94868 740 aa19.07■□□□□ 0.64
NPHP3-201ENST00000337331 TPM1P09493 284 aa19.07■□□□□ 0.64
NPHP3-201ENST00000337331 RRS1Q15050 365 aaKnown RBP19.07■□□□□ 0.64
NPHP3-201ENST00000337331 RIOK3O14730 519 aaKnown RBP19.06■□□□□ 0.64
NPHP3-201ENST00000337331 SNX21Q969T3 373 aa19.06■□□□□ 0.64
NPHP3-201ENST00000337331 NFXL1Q6ZNB6 911 aa19.06■□□□□ 0.64
NPHP3-201ENST00000337331 SSH1Q8WYL5 1049 aa19.06■□□□□ 0.64
NPHP3-201ENST00000337331 USP19O94966 1318 aa19.06■□□□□ 0.64
NPHP3-201ENST00000337331 ZSCAN20P17040 1043 aaPredicted RBP19.05■□□□□ 0.64
NPHP3-201ENST00000337331 PSMA5P28066 241 aa19.05■□□□□ 0.64
NPHP3-201ENST00000337331 TNNQ9UQP3 1299 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms