RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 PAK3O75914 559 aaPredicted RBP22■■□□□ 1.11
DDX41-201ENST00000330503 AEBP1Q8IUX7 1158 aa22■■□□□ 1.11
DDX41-201ENST00000330503 SBNO1A3KN83 1393 aa22■■□□□ 1.11
DDX41-201ENST00000330503 SULT6B1Q6IMI4 303 aa21.99■■□□□ 1.11
DDX41-201ENST00000330503 ORAI2Q96SN7 254 aa21.98■■□□□ 1.11
DDX41-201ENST00000330503 RGPD1P0DJD0 1748 aa21.98■■□□□ 1.11
DDX41-201ENST00000330503 KDM4FA0A1W2PPD8 638 aa21.98■■□□□ 1.11
DDX41-201ENST00000330503 HSPA2P54652 639 aa21.98■■□□□ 1.11
DDX41-201ENST00000330503 EXOSC9Q06265 439 aaKnown RBP21.98■■□□□ 1.11
DDX41-201ENST00000330503 FLT4P35916 1363 aa21.98■■□□□ 1.11
DDX41-201ENST00000330503 PSME1Q06323 249 aa21.97■■□□□ 1.11
DDX41-201ENST00000330503 CT47B1P0C2W7 299 aaPredicted RBP21.95■■□□□ 1.11
DDX41-201ENST00000330503 AMPHP49418 695 aa21.95■■□□□ 1.11
DDX41-201ENST00000330503 C19orf44Q9H6X5 657 aa21.95■■□□□ 1.11
DDX41-201ENST00000330503 PDE3AQ14432 1141 aa21.95■■□□□ 1.1
DDX41-201ENST00000330503 THUMPD2Q9BTF0 503 aaKnown RBP21.95■■□□□ 1.1
DDX41-201ENST00000330503 STRCP1A6NGW2 1772 aa21.95■■□□□ 1.1
DDX41-201ENST00000330503 DLG5Q8TDM6 1919 aa21.94■■□□□ 1.1
DDX41-201ENST00000330503 ARHGEF10O15013 1369 aa21.92■■□□□ 1.1
DDX41-201ENST00000330503 BCL2L13Q9BXK5 485 aa21.92■■□□□ 1.1
DDX41-201ENST00000330503 KIF24Q5T7B8 1368 aa21.92■■□□□ 1.1
DDX41-201ENST00000330503 FOXO3O43524 673 aa21.91■■□□□ 1.1
DDX41-201ENST00000330503 ZNF853P0CG23 659 aa21.91■■□□□ 1.1
DDX41-201ENST00000330503 HOXC9P31274 260 aa21.91■■□□□ 1.1
DDX41-201ENST00000330503 PANK1Q8TE04 598 aa21.91■■□□□ 1.1
DDX41-201ENST00000330503 FRAT1Q92837 279 aaPredicted RBP21.91■■□□□ 1.1
DDX41-201ENST00000330503 EYA1Q99502 592 aa21.91■■□□□ 1.1
DDX41-201ENST00000330503 C1orf167Q5SNV9 1468 aa21.9■■□□□ 1.1
DDX41-201ENST00000330503 TMEM94Q12767 1356 aa21.9■■□□□ 1.1
DDX41-201ENST00000330503 FAM83GA6ND36 823 aa21.89■■□□□ 1.1
DDX41-201ENST00000330503 CALD1Q05682 793 aaKnown RBP21.89■■□□□ 1.1
DDX41-201ENST00000330503 LMOD3Q0VAK6 560 aa21.89■■□□□ 1.1
DDX41-201ENST00000330503 CANXP27824 592 aaKnown RBP21.89■■□□□ 1.09
DDX41-201ENST00000330503 IFT57Q9NWB7 429 aa21.89■■□□□ 1.09
DDX41-201ENST00000330503 TNNQ9UQP3 1299 aa21.89■■□□□ 1.09
DDX41-201ENST00000330503 LAS1LQ9Y4W2 734 aaKnown RBP21.89■■□□□ 1.09
DDX41-201ENST00000330503 XPCQ01831 940 aaPredicted RBP21.88■■□□□ 1.09
DDX41-201ENST00000330503 RBM19Q9Y4C8 960 aaKnown RBP21.88■■□□□ 1.09
DDX41-201ENST00000330503 IGSF1Q8N6C5 1336 aa21.88■■□□□ 1.09
DDX41-201ENST00000330503 KDRP35968 1356 aa21.88■■□□□ 1.09
DDX41-201ENST00000330503 NFAT5O94916 1531 aa21.87■■□□□ 1.09
DDX41-201ENST00000330503 GNAI1P63096 354 aa21.87■■□□□ 1.09
DDX41-201ENST00000330503 DCTN1Q14203 1278 aa21.87■■□□□ 1.09
DDX41-201ENST00000330503 SSH1Q8WYL5 1049 aa21.87■■□□□ 1.09
DDX41-201ENST00000330503 NCOA3Q9Y6Q9 1424 aa21.86■■□□□ 1.09
DDX41-201ENST00000330503 RLBP1P12271 317 aa21.86■■□□□ 1.09
DDX41-201ENST00000330503 COG6Q9Y2V7 657 aa21.86■■□□□ 1.09
DDX41-201ENST00000330503 KDM2BQ8NHM5 1336 aa21.85■■□□□ 1.09
DDX41-201ENST00000330503 LMTK3Q96Q04 1460 aa21.85■■□□□ 1.09
DDX41-201ENST00000330503 KRT28Q7Z3Y7 464 aa21.85■■□□□ 1.09
DDX41-201ENST00000330503 CFAP44Q96MT7 982 aa21.85■■□□□ 1.09
DDX41-201ENST00000330503 MBIPQ9NS73 344 aa21.85■■□□□ 1.09
DDX41-201ENST00000330503 MST1RQ04912 1400 aa21.84■■□□□ 1.09
DDX41-201ENST00000330503 ATF3P18847 181 aa21.83■■□□□ 1.09
DDX41-201ENST00000330503 IP6K1Q92551 441 aa21.83■■□□□ 1.09
DDX41-201ENST00000330503 SMC4Q9NTJ3 1288 aa21.83■■□□□ 1.09
DDX41-201ENST00000330503 TRPM3Q9HCF6 1732 aaPredicted RBP21.83■■□□□ 1.09
DDX41-201ENST00000330503 RTL1A6NKG5 1358 aa21.83■■□□□ 1.09
DDX41-201ENST00000330503 LTN1O94822 1766 aa21.83■■□□□ 1.08
DDX41-201ENST00000330503 MTHFSDQ2M296 383 aaKnown RBP21.82■■□□□ 1.08
DDX41-201ENST00000330503 KCNH5Q8NCM2 988 aa21.82■■□□□ 1.08
DDX41-201ENST00000330503 KIF1AQ12756 1690 aa21.82■■□□□ 1.08
DDX41-201ENST00000330503 STRCQ7RTU9 1775 aa21.82■■□□□ 1.08
DDX41-201ENST00000330503 VAMP4O75379 141 aa21.82■■□□□ 1.08
DDX41-201ENST00000330503 DCCP43146 1447 aa21.81■■□□□ 1.08
DDX41-201ENST00000330503 ZKSCAN2Q63HK3 967 aa21.81■■□□□ 1.08
DDX41-201ENST00000330503 LTV1Q96GA3 475 aaPredicted RBP21.81■■□□□ 1.08
DDX41-201ENST00000330503 ALDH1L2Q3SY69 923 aa21.8■■□□□ 1.08
DDX41-201ENST00000330503 TSPYL6Q8N831 410 aa21.8■■□□□ 1.08
DDX41-201ENST00000330503 MCM10Q7L590 875 aa21.8■■□□□ 1.08
DDX41-201ENST00000330503 GCP02774 474 aa21.79■■□□□ 1.08
DDX41-201ENST00000330503 CLUAP1Q96AJ1 413 aa21.79■■□□□ 1.08
DDX41-201ENST00000330503 SLIT3O75094 1523 aa21.79■■□□□ 1.08
DDX41-201ENST00000330503 CENPQQ7L2Z9 268 aaPredicted RBP21.79■■□□□ 1.08
DDX41-201ENST00000330503 NOB1Q9ULX3 412 aaKnown RBP21.79■■□□□ 1.08
DDX41-201ENST00000330503 ZNF428Q96B54 188 aa21.78■■□□□ 1.08
DDX41-201ENST00000330503 USP19O94966 1318 aa21.78■■□□□ 1.08
DDX41-201ENST00000330503 C8orf58Q8NAV2 365 aa21.77■■□□□ 1.08
DDX41-201ENST00000330503 CHL1O00533 1208 aa21.77■■□□□ 1.08
DDX41-201ENST00000330503 BRPF1P55201 1214 aaPredicted RBP21.77■■□□□ 1.08
DDX41-201ENST00000330503 LMOD2Q6P5Q4 547 aa21.77■■□□□ 1.08
DDX41-201ENST00000330503 ARHGEF25Q86VW2 580 aa21.77■■□□□ 1.08
DDX41-201ENST00000330503 DZIP1LQ8IYY4 767 aaKnown RBP21.77■■□□□ 1.08
DDX41-201ENST00000330503 TRIM27P14373 513 aa21.76■■□□□ 1.07
DDX41-201ENST00000330503 CADPS2Q86UW7 1296 aa21.76■■□□□ 1.07
DDX41-201ENST00000330503 PHRF1Q9P1Y6 1649 aaKnown RBP21.76■■□□□ 1.07
DDX41-201ENST00000330503 CRB1P82279 1406 aa21.76■■□□□ 1.07
DDX41-201ENST00000330503 DDX17Q92841 729 aaKnown RBP21.76■■□□□ 1.07
DDX41-201ENST00000330503 XIRP1Q702N8 1843 aaKnown RBP21.75■■□□□ 1.07
DDX41-201ENST00000330503 ATF7IPQ6VMQ6 1270 aa21.75■■□□□ 1.07
DDX41-201ENST00000330503 ELL2O00472 640 aaPredicted RBP21.74■■□□□ 1.07
DDX41-201ENST00000330503 MS4A1P11836 297 aa21.74■■□□□ 1.07
DDX41-201ENST00000330503 AAMPQ13685 434 aa21.74■■□□□ 1.07
DDX41-201ENST00000330503 SKAP1Q86WV1 359 aa21.74■■□□□ 1.07
DDX41-201ENST00000330503 GAS2L2Q8NHY3 880 aa21.74■■□□□ 1.07
DDX41-201ENST00000330503 ZBTB7CA1YPR0 619 aa21.74■■□□□ 1.07
DDX41-201ENST00000330503 IGHDP01880 384 aa21.74■■□□□ 1.07
DDX41-201ENST00000330503 MVPQ14764 893 aaKnown RBP21.74■■□□□ 1.07
DDX41-201ENST00000330503 MRPL50Q8N5N7 158 aaKnown RBP21.74■■□□□ 1.07
DDX41-201ENST00000330503 TCERG1O14776 1098 aaKnown RBP21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms