RNA–Protein interactions for RNA: ENST00000330188.13

TPM3-206, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-206ENST00000330188 USP19O94966 1318 aa18.56■□□□□ 0.56
TPM3-206ENST00000330188 SLIT1O75093 1534 aa18.56■□□□□ 0.56
TPM3-206ENST00000330188 CALD1Q05682 793 aaKnown RBP18.56■□□□□ 0.56
TPM3-206ENST00000330188 TMEM57Q8N5G2 664 aa18.56■□□□□ 0.56
TPM3-206ENST00000330188 TTC21BQ7Z4L5 1316 aa18.56■□□□□ 0.56
TPM3-206ENST00000330188 NALCNQ8IZF0 1738 aa18.56■□□□□ 0.56
TPM3-206ENST00000330188 IPO8O15397 1037 aaKnown RBP18.55■□□□□ 0.56
TPM3-206ENST00000330188 BRPF1P55201 1214 aaPredicted RBP18.55■□□□□ 0.56
TPM3-206ENST00000330188 RTL5Q5HYW3 569 aaPredicted RBP18.55■□□□□ 0.56
TPM3-206ENST00000330188 ZNF428Q96B54 188 aa18.55■□□□□ 0.56
TPM3-206ENST00000330188 OVOS2A0A0J9YW53 1432 aa18.55■□□□□ 0.56
TPM3-206ENST00000330188 OVOS2Q6IE36 1432 aa18.55■□□□□ 0.56
TPM3-206ENST00000330188 ARHGAP23Q9P227 1491 aa18.55■□□□□ 0.56
TPM3-206ENST00000330188 PLEKHG3A1L390 1219 aa18.55■□□□□ 0.56
TPM3-206ENST00000330188 IFT57Q9NWB7 429 aa18.55■□□□□ 0.56
TPM3-206ENST00000330188 ACEP12821 1306 aa18.54■□□□□ 0.56
TPM3-206ENST00000330188 ZNF853P0CG23 659 aa18.54■□□□□ 0.56
TPM3-206ENST00000330188 HDAC1Q13547 482 aaPredicted RBP18.54■□□□□ 0.56
TPM3-206ENST00000330188 USP6P35125 1406 aa18.54■□□□□ 0.56
TPM3-206ENST00000330188 DEKP35659 375 aaKnown RBP18.53■□□□□ 0.56
TPM3-206ENST00000330188 SLC4A3P48751 1232 aa18.53■□□□□ 0.56
TPM3-206ENST00000330188 GNAI1P63096 354 aa18.53■□□□□ 0.56
TPM3-206ENST00000330188 FER1L4A9Z1Z3 1794 aa18.53■□□□□ 0.56
TPM3-206ENST00000330188 SEC24BO95487 1268 aa18.53■□□□□ 0.56
TPM3-206ENST00000330188 SLC26A8Q96RN1 970 aa18.53■□□□□ 0.56
TPM3-206ENST00000330188 VAMP4O75379 141 aa18.52■□□□□ 0.56
TPM3-206ENST00000330188 ZBTB40Q9NUA8 1239 aa18.52■□□□□ 0.56
TPM3-206ENST00000330188 LMOD3Q0VAK6 560 aa18.52■□□□□ 0.55
TPM3-206ENST00000330188 EID1Q9Y6B2 187 aa18.52■□□□□ 0.55
TPM3-206ENST00000330188 PEAK1Q9H792 1746 aa18.52■□□□□ 0.55
TPM3-206ENST00000330188 MBIPQ9NS73 344 aa18.51■□□□□ 0.55
TPM3-206ENST00000330188 NUTM2FA1L443 756 aa18.5■□□□□ 0.55
TPM3-206ENST00000330188 TSPYL6Q8N831 410 aa18.5■□□□□ 0.55
TPM3-206ENST00000330188 DAXXQ9UER7 740 aaPredicted RBP18.5■□□□□ 0.55
TPM3-206ENST00000330188 SSH2Q76I76 1423 aa18.5■□□□□ 0.55
TPM3-206ENST00000330188 EIF4A2Q14240 407 aaKnown RBP18.5■□□□□ 0.55
TPM3-206ENST00000330188 MRPL50Q8N5N7 158 aaKnown RBP18.5■□□□□ 0.55
TPM3-206ENST00000330188 PTCH1Q13635 1447 aa18.49■□□□□ 0.55
TPM3-206ENST00000330188 CFAP44Q96MT7 982 aa18.49■□□□□ 0.55
TPM3-206ENST00000330188 AMOTL2Q9Y2J4 779 aa18.49■□□□□ 0.55
TPM3-206ENST00000330188 RGPD1P0DJD0 1748 aa18.48■□□□□ 0.55
TPM3-206ENST00000330188 USP31Q70CQ4 1352 aa18.48■□□□□ 0.55
TPM3-206ENST00000330188 DIP2AQ14689 1571 aa18.48■□□□□ 0.55
TPM3-206ENST00000330188 USP35Q9P2H5 1018 aa18.48■□□□□ 0.55
TPM3-206ENST00000330188 TBX22Q9Y458 520 aa18.48■□□□□ 0.55
TPM3-206ENST00000330188 PIK3R4Q99570 1358 aa18.48■□□□□ 0.55
TPM3-206ENST00000330188 SMC5Q8IY18 1101 aa18.47■□□□□ 0.55
TPM3-206ENST00000330188 FAM83GA6ND36 823 aa18.47■□□□□ 0.55
TPM3-206ENST00000330188 ARHGAP45Q92619 1136 aa18.47■□□□□ 0.55
TPM3-206ENST00000330188 RGPD8O14715 1765 aaPredicted RBP18.47■□□□□ 0.55
TPM3-206ENST00000330188 AEBP1Q8IUX7 1158 aa18.46■□□□□ 0.55
TPM3-206ENST00000330188 FMN2Q9NZ56 1722 aa18.45■□□□□ 0.54
TPM3-206ENST00000330188 TWISTNBQ3B726 338 aaPredicted RBP18.45■□□□□ 0.54
TPM3-206ENST00000330188 SULT6B1Q6IMI4 303 aa18.45■□□□□ 0.54
TPM3-206ENST00000330188 XRN1Q8IZH2 1706 aaKnown RBP18.45■□□□□ 0.54
TPM3-206ENST00000330188 RIMS1Q86UR5 1692 aaKnown RBP18.45■□□□□ 0.54
TPM3-206ENST00000330188 DCTN1Q14203 1278 aa18.44■□□□□ 0.54
TPM3-206ENST00000330188 ELL2O00472 640 aaPredicted RBP18.44■□□□□ 0.54
TPM3-206ENST00000330188 PLPPR3Q6T4P5 718 aa18.44■□□□□ 0.54
TPM3-206ENST00000330188 C8orf58Q8NAV2 365 aa18.44■□□□□ 0.54
TPM3-206ENST00000330188 TTC21AQ8NDW8 1320 aa18.44■□□□□ 0.54
TPM3-206ENST00000330188 HSP90AB2PQ58FF8 381 aa18.43■□□□□ 0.54
TPM3-206ENST00000330188 ABCC4O15439 1325 aa18.42■□□□□ 0.54
TPM3-206ENST00000330188 ZBTB7BO15156 539 aaPredicted RBP18.42■□□□□ 0.54
TPM3-206ENST00000330188 THEMISQ8N1K5 641 aaPredicted RBP18.42■□□□□ 0.54
TPM3-206ENST00000330188 TBC1D32Q96NH3 1257 aa18.41■□□□□ 0.54
TPM3-206ENST00000330188 UPF2Q9HAU5 1272 aaKnown RBP18.41■□□□□ 0.54
TPM3-206ENST00000330188 PIK3C2AO00443 1686 aa18.41■□□□□ 0.54
TPM3-206ENST00000330188 NUCB1Q02818 461 aa18.4■□□□□ 0.54
TPM3-206ENST00000330188 CHMP4BQ9H444 224 aaKnown RBP18.4■□□□□ 0.54
TPM3-206ENST00000330188 MAP3K19Q56UN5 1328 aa18.39■□□□□ 0.53
TPM3-206ENST00000330188 ARHGEF10O15013 1369 aa18.39■□□□□ 0.53
TPM3-206ENST00000330188 NFKBIBQ15653 356 aa18.38■□□□□ 0.53
TPM3-206ENST00000330188 SOX12O15370 315 aa18.38■□□□□ 0.53
TPM3-206ENST00000330188 NGDNQ8NEJ9 315 aaKnown RBP18.37■□□□□ 0.53
TPM3-206ENST00000330188 SBNO1A3KN83 1393 aa18.37■□□□□ 0.53
TPM3-206ENST00000330188 CHL1O00533 1208 aa18.37■□□□□ 0.53
TPM3-206ENST00000330188 API5Q9BZZ5 524 aaKnown RBP18.37■□□□□ 0.53
TPM3-206ENST00000330188 FLT4P35916 1363 aa18.37■□□□□ 0.53
TPM3-206ENST00000330188 BECN1Q14457 450 aa18.36■□□□□ 0.53
TPM3-206ENST00000330188 MCM10Q7L590 875 aa18.36■□□□□ 0.53
TPM3-206ENST00000330188 ANKARQ7Z5J8 1434 aa18.36■□□□□ 0.53
TPM3-206ENST00000330188 CHD1LQ86WJ1 897 aa18.35■□□□□ 0.53
TPM3-206ENST00000330188 C1orf115Q9H7X2 142 aa18.35■□□□□ 0.53
TPM3-206ENST00000330188 MARF1Q9Y4F3 1742 aaKnown RBP18.35■□□□□ 0.53
TPM3-206ENST00000330188 CEP170BQ9Y4F5 1589 aaPredicted RBP18.35■□□□□ 0.53
TPM3-206ENST00000330188 LNPKQ9C0E8 428 aa18.35■□□□□ 0.53
TPM3-206ENST00000330188 CRB1P82279 1406 aa18.34■□□□□ 0.53
TPM3-206ENST00000330188 KIF24Q5T7B8 1368 aa18.34■□□□□ 0.53
TPM3-206ENST00000330188 KIAA0232Q92628 1395 aa18.34■□□□□ 0.53
TPM3-206ENST00000330188 USP54Q70EL1 1684 aa18.34■□□□□ 0.53
TPM3-206ENST00000330188 GCC1Q96CN9 775 aa18.34■□□□□ 0.53
TPM3-206ENST00000330188 KDRP35968 1356 aa18.33■□□□□ 0.53
TPM3-206ENST00000330188 KCNA6P17658 529 aa18.33■□□□□ 0.52
TPM3-206ENST00000330188 KRT24Q2M2I5 525 aa18.33■□□□□ 0.52
TPM3-206ENST00000330188 SIRT2Q8IXJ6 389 aa18.32■□□□□ 0.52
TPM3-206ENST00000330188 RGS12O14924 1447 aa18.32■□□□□ 0.52
TPM3-206ENST00000330188 HAP1P54257 671 aaPredicted RBP18.31■□□□□ 0.52
TPM3-206ENST00000330188 IGSF1Q8N6C5 1336 aa18.31■□□□□ 0.52
TPM3-206ENST00000330188 MTHFSDQ2M296 383 aaKnown RBP18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms