RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 CFAP57Q96MR6 1250 aa16.79■□□□□ 0.28
COL7A1-201ENST00000328333 SMARCA4P51532 1647 aa16.79■□□□□ 0.28
COL7A1-201ENST00000328333 ME1P48163 572 aa16.79■□□□□ 0.28
COL7A1-201ENST00000328333 PTPN14Q15678 1187 aa16.79■□□□□ 0.28
COL7A1-201ENST00000328333 GSDMDP57764 484 aa16.78■□□□□ 0.28
COL7A1-201ENST00000328333 MAP2K1Q02750 393 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-201ENST00000328333 ERICH4A6NGS2 130 aa16.78■□□□□ 0.28
COL7A1-201ENST00000328333 TAX1BP1Q86VP1 789 aa16.78■□□□□ 0.28
COL7A1-201ENST00000328333 LNPKQ9C0E8 428 aa16.78■□□□□ 0.28
COL7A1-201ENST00000328333 LRRFIP2Q9Y608 721 aaKnown RBP16.78■□□□□ 0.28
COL7A1-201ENST00000328333 PPP1R12BO60237 982 aaPredicted RBP16.77■□□□□ 0.28
COL7A1-201ENST00000328333 KRT32Q14532 448 aa16.77■□□□□ 0.28
COL7A1-201ENST00000328333 MAP3K11Q16584 847 aa16.77■□□□□ 0.28
COL7A1-201ENST00000328333 DNAI2Q9GZS0 605 aa16.77■□□□□ 0.28
COL7A1-201ENST00000328333 RIPK4P57078 832 aa16.77■□□□□ 0.28
COL7A1-201ENST00000328333 EHBP1Q8NDI1 1231 aa16.77■□□□□ 0.28
COL7A1-201ENST00000328333 BACH2Q9BYV9 841 aa16.77■□□□□ 0.28
COL7A1-201ENST00000328333 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.77■□□□□ 0.282e-6■■■■■ 41.4
COL7A1-201ENST00000328333 PPP6R1Q9UPN7 881 aa16.77■□□□□ 0.28
COL7A1-201ENST00000328333 KIAA1328Q86T90 577 aa16.77■□□□□ 0.27
COL7A1-201ENST00000328333 UPF3BQ9BZI7 483 aaKnown RBP16.77■□□□□ 0.27
COL7A1-201ENST00000328333 TAOK3Q9H2K8 898 aa16.77■□□□□ 0.27
COL7A1-201ENST00000328333 ZSCAN31Q96LW9 406 aaPredicted RBP16.77■□□□□ 0.27
COL7A1-201ENST00000328333 TAF4BQ92750 862 aa16.77■□□□□ 0.27
COL7A1-201ENST00000328333 ZNF428Q96B54 188 aa16.77■□□□□ 0.27
COL7A1-201ENST00000328333 NUP62CLQ9H1M0 184 aa16.77■□□□□ 0.27
COL7A1-201ENST00000328333 PAXBP1Q9Y5B6 917 aa16.77■□□□□ 0.27
COL7A1-201ENST00000328333 BBXQ8WY36 941 aaPredicted RBP16.76■□□□□ 0.27
COL7A1-201ENST00000328333 WASF1Q92558 559 aa16.76■□□□□ 0.27
COL7A1-201ENST00000328333 CCDC175P0C221 793 aa16.76■□□□□ 0.27
COL7A1-201ENST00000328333 DHX29Q7Z478 1369 aaKnown RBP16.76■□□□□ 0.27
COL7A1-201ENST00000328333 ANKRD18BA2A2Z9 1011 aa16.76■□□□□ 0.27
COL7A1-201ENST00000328333 CTAGE5O15320 804 aa16.76■□□□□ 0.27
COL7A1-201ENST00000328333 TUBB4AP04350 444 aa16.75■□□□□ 0.27
COL7A1-201ENST00000328333 KANK4Q5T7N3 995 aaPredicted RBP16.75■□□□□ 0.27
COL7A1-201ENST00000328333 ANKRD62A6NC57 917 aa16.75■□□□□ 0.27
COL7A1-201ENST00000328333 CEP63Q96MT8 703 aa16.75■□□□□ 0.27
COL7A1-201ENST00000328333 ERICH3Q5RHP9 1530 aa16.75■□□□□ 0.27
COL7A1-201ENST00000328333 CEP131Q9UPN4 1083 aa16.74■□□□□ 0.27
COL7A1-201ENST00000328333 POTEJP0CG39 1038 aa16.74■□□□□ 0.27
COL7A1-201ENST00000328333 NAA15Q9BXJ9 866 aaKnown RBP16.74■□□□□ 0.27
COL7A1-201ENST00000328333 FSD1Q9BTV5 496 aa16.74■□□□□ 0.27
COL7A1-201ENST00000328333 SPATA32Q96LK8 384 aa16.74■□□□□ 0.27
COL7A1-201ENST00000328333 C6orf163Q5TEZ5 329 aa16.74■□□□□ 0.27
COL7A1-201ENST00000328333 APAF1O14727 1248 aa16.73■□□□□ 0.27
COL7A1-201ENST00000328333 KRT18P05783 430 aaKnown RBP16.73■□□□□ 0.27
COL7A1-201ENST00000328333 SCAND2PQ9GZW5 306 aaPredicted RBP16.73■□□□□ 0.27
COL7A1-201ENST00000328333 CCDC183Q5T5S1 534 aa16.73■□□□□ 0.27
COL7A1-201ENST00000328333 GGT6Q6P531 493 aa16.73■□□□□ 0.27
COL7A1-201ENST00000328333 FMNL2Q96PY5 1086 aa16.73■□□□□ 0.27
COL7A1-201ENST00000328333 MCM4P33991 863 aa16.73■□□□□ 0.27
COL7A1-201ENST00000328333 NOL7Q9UMY1 257 aaKnown RBP16.73■□□□□ 0.27
COL7A1-201ENST00000328333 ANKS4BQ8N8V4 417 aa16.72■□□□□ 0.27
COL7A1-201ENST00000328333 SPA17Q15506 151 aa16.72■□□□□ 0.27
COL7A1-201ENST00000328333 BMP2KQ9NSY1 1161 aaPredicted RBP16.72■□□□□ 0.27
COL7A1-201ENST00000328333 FGFR1OPO95684 399 aaKnown RBP16.72■□□□□ 0.27
COL7A1-201ENST00000328333 CASQ1P31415 396 aa16.71■□□□□ 0.27
COL7A1-201ENST00000328333 MEX3CQ5U5Q3 659 aaKnown RBP16.71■□□□□ 0.27
COL7A1-201ENST00000328333 HECW1Q76N89 1606 aa16.71■□□□□ 0.27
COL7A1-201ENST00000328333 NBPF1Q3BBV0 1214 aa16.71■□□□□ 0.27
COL7A1-201ENST00000328333 BRPF1P55201 1214 aaPredicted RBP16.71■□□□□ 0.26
COL7A1-201ENST00000328333 CCT4P50991 539 aaKnown RBP16.7■□□□□ 0.26
COL7A1-201ENST00000328333 NACAP1Q9BZK3 213 aa16.7■□□□□ 0.26
COL7A1-201ENST00000328333 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.7■□□□□ 0.26
COL7A1-201ENST00000328333 V9GYY5 206 aaPredicted RBP16.7■□□□□ 0.26
COL7A1-201ENST00000328333 ALS2CR12Q96Q35 445 aa16.7■□□□□ 0.26
COL7A1-201ENST00000328333 FAM193AP78312 1265 aa16.7■□□□□ 0.26
COL7A1-201ENST00000328333 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.69■□□□□ 0.26
COL7A1-201ENST00000328333 CCDC27Q2M243 656 aa16.69■□□□□ 0.26
COL7A1-201ENST00000328333 DNAAF4Q8WXU2 420 aa16.69■□□□□ 0.26
COL7A1-201ENST00000328333 CCDC30Q5VVM6 783 aa16.69■□□□□ 0.26
COL7A1-201ENST00000328333 PHAXQ9H814 394 aaKnown RBP16.69■□□□□ 0.26
COL7A1-201ENST00000328333 FHOD3Q2V2M9 1422 aa16.69■□□□□ 0.26
COL7A1-201ENST00000328333 KRT222Q8N1A0 295 aa16.69■□□□□ 0.26
COL7A1-201ENST00000328333 GNL3LQ9NVN8 582 aaKnown RBP16.69■□□□□ 0.26
COL7A1-201ENST00000328333 FGD6Q6ZV73 1430 aa16.69■□□□□ 0.26
COL7A1-201ENST00000328333 CCDC57Q2TAC2 916 aa16.68■□□□□ 0.26
COL7A1-201ENST00000328333 LARP1BQ659C4 914 aaKnown RBP16.68■□□□□ 0.26
COL7A1-201ENST00000328333 EFCAB5A4FU69 1503 aa16.68■□□□□ 0.26
COL7A1-201ENST00000328333 GNAI2P04899 355 aa16.68■□□□□ 0.26
COL7A1-201ENST00000328333 HSPA4P34932 840 aa16.68■□□□□ 0.26
COL7A1-201ENST00000328333 SEPT6Q14141 434 aa16.68■□□□□ 0.26
COL7A1-201ENST00000328333 WASHC4Q2M389 1173 aa16.68■□□□□ 0.26
COL7A1-201ENST00000328333 RAD21O60216 631 aa16.67■□□□□ 0.26
COL7A1-201ENST00000328333 IFFO1Q0D2I5 559 aa16.67■□□□□ 0.26
COL7A1-201ENST00000328333 MNAT1P51948 309 aa16.67■□□□□ 0.26
COL7A1-201ENST00000328333 ZSCAN25Q6NSZ9 544 aa16.67■□□□□ 0.26
COL7A1-201ENST00000328333 GTPBP4Q9BZE4 634 aaKnown RBP16.67■□□□□ 0.26
COL7A1-201ENST00000328333 BMS1Q14692 1282 aaKnown RBP16.67■□□□□ 0.26
COL7A1-201ENST00000328333 CTNNA3Q9UI47 895 aa16.67■□□□□ 0.26
COL7A1-201ENST00000328333 SETSIPP0DME0 302 aa16.67■□□□□ 0.26
COL7A1-201ENST00000328333 ANO10Q9NW15 660 aa16.67■□□□□ 0.26
COL7A1-201ENST00000328333 EHBP1L1Q8N3D4 1523 aa16.67■□□□□ 0.26
COL7A1-201ENST00000328333 SH2B1Q9NRF2 756 aaPredicted RBP16.66■□□□□ 0.26
COL7A1-201ENST00000328333 SKIDA1Q1XH10 827 aa16.66■□□□□ 0.26
COL7A1-201ENST00000328333 PANK1Q8TE04 598 aa16.66■□□□□ 0.26
COL7A1-201ENST00000328333 NSRP1Q9H0G5 558 aaKnown RBP16.66■□□□□ 0.26
COL7A1-201ENST00000328333 STMN4Q9H169 189 aaPredicted RBP16.66■□□□□ 0.26
COL7A1-201ENST00000328333 HMGB1P1B2RPK0 211 aaPredicted RBP16.66■□□□□ 0.26
COL7A1-201ENST00000328333 CFAP100Q494V2 611 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms