RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 WDR63Q8IWG1 891 aa24.12■■□□□ 1.45
USP39-201ENST00000323701 SBNO1A3KN83 1393 aa24.11■■□□□ 1.45
USP39-201ENST00000323701 NCBP3Q53F19 620 aaKnown RBP24.11■■□□□ 1.45
USP39-201ENST00000323701 NCOA3Q9Y6Q9 1424 aa24.11■■□□□ 1.45
USP39-201ENST00000323701 FLT4P35916 1363 aa24.1■■□□□ 1.45
USP39-201ENST00000323701 DCCP43146 1447 aa24.09■■□□□ 1.45
USP39-201ENST00000323701 PLEKHG5O94827 1062 aa24.09■■□□□ 1.45
USP39-201ENST00000323701 AMPHP49418 695 aa24.09■■□□□ 1.45
USP39-201ENST00000323701 SULT6B1Q6IMI4 303 aa24.09■■□□□ 1.45
USP39-201ENST00000323701 PNNQ9H307 717 aaKnown RBP24.09■■□□□ 1.45
USP39-201ENST00000323701 RGPD1P0DJD0 1748 aa24.08■■□□□ 1.45
USP39-201ENST00000323701 ERICH6BQ5W0A0 696 aa24.08■■□□□ 1.45
USP39-201ENST00000323701 KRT28Q7Z3Y7 464 aa24.08■■□□□ 1.45
USP39-201ENST00000323701 TRPM3Q9HCF6 1732 aaPredicted RBP24.08■■□□□ 1.44
USP39-201ENST00000323701 HOXC9P31274 260 aa24.06■■□□□ 1.44
USP39-201ENST00000323701 NFAT5O94916 1531 aa24.06■■□□□ 1.44
USP39-201ENST00000323701 NFE2L2Q16236 605 aa24.05■■□□□ 1.44
USP39-201ENST00000323701 CADPS2Q86UW7 1296 aa24.05■■□□□ 1.44
USP39-201ENST00000323701 TSR2Q969E8 191 aaKnown RBP24.05■■□□□ 1.44
USP39-201ENST00000323701 PPP4R2Q9NY27 417 aa24.05■■□□□ 1.44
USP39-201ENST00000323701 KIF1AQ12756 1690 aa24.05■■□□□ 1.44
USP39-201ENST00000323701 LMOD2Q6P5Q4 547 aa24.05■■□□□ 1.44
USP39-201ENST00000323701 MSH6P52701 1360 aa24.04■■□□□ 1.44
USP39-201ENST00000323701 BCAR3O75815 825 aa24.03■■□□□ 1.44
USP39-201ENST00000323701 C20orf194Q5TEA3 1177 aa24.03■■□□□ 1.44
USP39-201ENST00000323701 THUMPD2Q9BTF0 503 aaKnown RBP24.03■■□□□ 1.44
USP39-201ENST00000323701 B4GALNT3Q6L9W6 998 aa24.03■■□□□ 1.44
USP39-201ENST00000323701 EYA1Q99502 592 aa24.02■■□□□ 1.44
USP39-201ENST00000323701 LTN1O94822 1766 aa24.02■■□□□ 1.44
USP39-201ENST00000323701 EXOC6Q8TAG9 804 aa24.02■■□□□ 1.44
USP39-201ENST00000323701 FANCIQ9NVI1 1328 aa24■■□□□ 1.43
USP39-201ENST00000323701 NEFMP07197 916 aa24■■□□□ 1.43
USP39-201ENST00000323701 DLG5Q8TDM6 1919 aa23.99■■□□□ 1.43
USP39-201ENST00000323701 LTV1Q96GA3 475 aaPredicted RBP23.99■■□□□ 1.43
USP39-201ENST00000323701 FAM83GA6ND36 823 aa23.99■■□□□ 1.43
USP39-201ENST00000323701 GCP02774 474 aa23.99■■□□□ 1.43
USP39-201ENST00000323701 ARHGEF10O15013 1369 aa23.98■■□□□ 1.43
USP39-201ENST00000323701 MYH16Q9H6N6 1097 aa23.98■■□□□ 1.43
USP39-201ENST00000323701 IGSF1Q8N6C5 1336 aa23.98■■□□□ 1.43
USP39-201ENST00000323701 KIF24Q5T7B8 1368 aa23.98■■□□□ 1.43
USP39-201ENST00000323701 ZBTB7CA1YPR0 619 aa23.98■■□□□ 1.43
USP39-201ENST00000323701 ALS2Q96Q42 1657 aa23.97■■□□□ 1.43
USP39-201ENST00000323701 USP19O94966 1318 aa23.97■■□□□ 1.43
USP39-201ENST00000323701 SLIT3O75094 1523 aa23.97■■□□□ 1.43
USP39-201ENST00000323701 KDRP35968 1356 aa23.96■■□□□ 1.43
USP39-201ENST00000323701 DCTN1Q14203 1278 aa23.96■■□□□ 1.43
USP39-201ENST00000323701 BRINP3Q76B58 766 aa23.96■■□□□ 1.43
USP39-201ENST00000323701 IP6K1Q92551 441 aa23.96■■□□□ 1.43
USP39-201ENST00000323701 KCNH5Q8NCM2 988 aa23.95■■□□□ 1.42
USP39-201ENST00000323701 IL16Q14005 1332 aa23.95■■□□□ 1.42
USP39-201ENST00000323701 ARHGEF25Q86VW2 580 aa23.94■■□□□ 1.42
USP39-201ENST00000323701 RTL1A6NKG5 1358 aa23.94■■□□□ 1.42
USP39-201ENST00000323701 MED1Q15648 1581 aaPredicted RBP23.94■■□□□ 1.42
USP39-201ENST00000323701 EXOSC9Q06265 439 aaKnown RBP23.93■■□□□ 1.42
USP39-201ENST00000323701 CRBNQ96SW2 442 aa23.93■■□□□ 1.42
USP39-201ENST00000323701 RARSP54136 660 aaKnown RBP23.93■■□□□ 1.42
USP39-201ENST00000323701 PXDNQ92626 1479 aa23.93■■□□□ 1.42
USP39-201ENST00000323701 USHBP1Q8N6Y0 703 aa23.92■■□□□ 1.42
USP39-201ENST00000323701 NPHP3Q7Z494 1330 aa23.92■■□□□ 1.42
USP39-201ENST00000323701 BCL2L13Q9BXK5 485 aa23.92■■□□□ 1.42
USP39-201ENST00000323701 SLAIN2Q9P270 581 aa23.92■■□□□ 1.42
USP39-201ENST00000323701 LAS1LQ9Y4W2 734 aaKnown RBP23.91■■□□□ 1.42
USP39-201ENST00000323701 MTHFSDQ2M296 383 aaKnown RBP23.9■■□□□ 1.42
USP39-201ENST00000323701 CABLES1Q8TDN4 633 aa23.9■■□□□ 1.42
USP39-201ENST00000323701 AXIN2Q9Y2T1 843 aa23.9■■□□□ 1.42
USP39-201ENST00000323701 PHRF1Q9P1Y6 1649 aaKnown RBP23.89■■□□□ 1.42
USP39-201ENST00000323701 NBPF6Q5VWK0 638 aa23.89■■□□□ 1.41
USP39-201ENST00000323701 NBPF4Q96M43 638 aa23.89■■□□□ 1.41
USP39-201ENST00000323701 ZC3H6P61129 1189 aaKnown RBP23.88■■□□□ 1.41
USP39-201ENST00000323701 MCM10Q7L590 875 aa23.88■■□□□ 1.41
USP39-201ENST00000323701 LRRC59Q96AG4 307 aaKnown RBP23.88■■□□□ 1.41
USP39-201ENST00000323701 ZNF853P0CG23 659 aa23.87■■□□□ 1.41
USP39-201ENST00000323701 RGPD2P0DJD1 1756 aa23.87■■□□□ 1.41
USP39-201ENST00000323701 TNS3Q68CZ2 1445 aa23.86■■□□□ 1.41
USP39-201ENST00000323701 SPATA31A3Q5VYP0 1347 aa23.86■■□□□ 1.41
USP39-201ENST00000323701 CCDC136Q96JN2 1154 aa23.85■■□□□ 1.41
USP39-201ENST00000323701 MBIPQ9NS73 344 aa23.85■■□□□ 1.41
USP39-201ENST00000323701 TNNQ9UQP3 1299 aa23.85■■□□□ 1.41
USP39-201ENST00000323701 LMOD3Q0VAK6 560 aa23.84■■□□□ 1.41
USP39-201ENST00000323701 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.84■■□□□ 1.41
USP39-201ENST00000323701 IFT57Q9NWB7 429 aa23.84■■□□□ 1.41
USP39-201ENST00000323701 FRAT1Q92837 279 aaPredicted RBP23.83■■□□□ 1.41
USP39-201ENST00000323701 TSPYL6Q8N831 410 aa23.82■■□□□ 1.4
USP39-201ENST00000323701 CFAP44Q96MT7 982 aa23.82■■□□□ 1.4
USP39-201ENST00000323701 RGPD5Q99666 1765 aa23.82■■□□□ 1.4
USP39-201ENST00000323701 GNAI1P63096 354 aa23.81■■□□□ 1.4
USP39-201ENST00000323701 PANK1Q8TE04 598 aa23.81■■□□□ 1.4
USP39-201ENST00000323701 ANKRD24Q8TF21 1146 aa23.81■■□□□ 1.4
USP39-201ENST00000323701 SSH1Q8WYL5 1049 aa23.81■■□□□ 1.4
USP39-201ENST00000323701 CALD1Q05682 793 aaKnown RBP23.8■■□□□ 1.4
USP39-201ENST00000323701 TSHZ2Q9NRE2 1034 aa23.8■■□□□ 1.4
USP39-201ENST00000323701 SOS2Q07890 1332 aaPredicted RBP23.79■■□□□ 1.4
USP39-201ENST00000323701 CRYBG1Q9Y4K1 1723 aa23.79■■□□□ 1.4
USP39-201ENST00000323701 CT47B1P0C2W7 299 aaPredicted RBP23.78■■□□□ 1.4
USP39-201ENST00000323701 CRB1P82279 1406 aa23.78■■□□□ 1.4
USP39-201ENST00000323701 ELL2O00472 640 aaPredicted RBP23.78■■□□□ 1.4
USP39-201ENST00000323701 RLBP1P12271 317 aa23.78■■□□□ 1.4
USP39-201ENST00000323701 C8orf58Q8NAV2 365 aa23.77■■□□□ 1.4
USP39-201ENST00000323701 CANXP27824 592 aaKnown RBP23.76■■□□□ 1.39
USP39-201ENST00000323701 CHRNA2Q15822 529 aa23.76■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms