RNA–Protein interactions for RNA: ENST00000318266.9

PTPRA-202, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRA, Length 3,219 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-202ENST00000318266 MPNDQ8N594 471 aa11.96□□□□□ -0.49
PTPRA-202ENST00000318266 CLTCL1P53675 1640 aa11.96□□□□□ -0.5
PTPRA-202ENST00000318266 SHPRHQ149N8 1683 aa11.96□□□□□ -0.5
PTPRA-202ENST00000318266 PRIM1P49642 420 aaKnown RBP11.96□□□□□ -0.5
PTPRA-202ENST00000318266 RNF214Q8ND24 703 aa11.96□□□□□ -0.5
PTPRA-202ENST00000318266 ESF1Q9H501 851 aaKnown RBP11.96□□□□□ -0.5
PTPRA-202ENST00000318266 PRPF40AO75400 957 aaKnown RBP11.95□□□□□ -0.5
PTPRA-202ENST00000318266 PRDM10Q9NQV6 1147 aa11.95□□□□□ -0.5
PTPRA-202ENST00000318266 APBB1O00213 710 aa11.95□□□□□ -0.5
PTPRA-202ENST00000318266 IPO8O15397 1037 aaKnown RBP11.95□□□□□ -0.5
PTPRA-202ENST00000318266 SLC24A1O60721 1099 aa11.95□□□□□ -0.5
PTPRA-202ENST00000318266 CABP2Q9NPB3 220 aa11.95□□□□□ -0.5
PTPRA-202ENST00000318266 PTMSP20962 102 aa11.94□□□□□ -0.5
PTPRA-202ENST00000318266 STAC3Q96MF2 364 aa11.94□□□□□ -0.5
PTPRA-202ENST00000318266 AK9Q5TCS8 1911 aa11.94□□□□□ -0.5
PTPRA-202ENST00000318266 THUMPD2Q9BTF0 503 aaKnown RBP11.94□□□□□ -0.5
PTPRA-202ENST00000318266 SPHKAPQ2M3C7 1700 aa11.94□□□□□ -0.5
PTPRA-202ENST00000318266 TPRNQ4KMQ1 711 aa11.94□□□□□ -0.5
PTPRA-202ENST00000318266 KIF16BQ96L93 1317 aa11.93□□□□□ -0.5
PTPRA-202ENST00000318266 TRPM2O94759 1503 aa11.93□□□□□ -0.5
PTPRA-202ENST00000318266 KANK1Q14678 1352 aa11.93□□□□□ -0.5
PTPRA-202ENST00000318266 ZGPATQ8N5A5 531 aaKnown RBP11.93□□□□□ -0.5
PTPRA-202ENST00000318266 SYCE3A1L190 88 aa11.92□□□□□ -0.5
PTPRA-202ENST00000318266 CT47B1P0C2W7 299 aaPredicted RBP11.92□□□□□ -0.5
PTPRA-202ENST00000318266 FOXD4L6Q3SYB3 417 aaPredicted RBP11.92□□□□□ -0.5
PTPRA-202ENST00000318266 FOXD4L3Q6VB84 417 aaPredicted RBP11.92□□□□□ -0.5
PTPRA-202ENST00000318266 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.92□□□□□ -0.5
PTPRA-202ENST00000318266 LMBRD1Q9NUN5 540 aa11.92□□□□□ -0.5
PTPRA-202ENST00000318266 MED14O60244 1454 aa11.91□□□□□ -0.5
PTPRA-202ENST00000318266 JARID2Q92833 1246 aaPredicted RBP11.91□□□□□ -0.5
PTPRA-202ENST00000318266 ATAD2Q6PL18 1390 aa11.91□□□□□ -0.5
PTPRA-202ENST00000318266 CDC45O75419 566 aa11.91□□□□□ -0.5
PTPRA-202ENST00000318266 FBLN1P23142 703 aa11.91□□□□□ -0.5
PTPRA-202ENST00000318266 C16orf71Q8IYS4 520 aaPredicted RBP11.91□□□□□ -0.5
PTPRA-202ENST00000318266 PLEKHF1Q96S99 279 aa11.91□□□□□ -0.5
PTPRA-202ENST00000318266 NOL7Q9UMY1 257 aaKnown RBP11.91□□□□□ -0.5
PTPRA-202ENST00000318266 NOS1P29475 1434 aa11.91□□□□□ -0.5
PTPRA-202ENST00000318266 PPIP5K1Q6PFW1 1433 aa11.91□□□□□ -0.5
PTPRA-202ENST00000318266 ATP7AQ04656 1500 aa11.91□□□□□ -0.5
PTPRA-202ENST00000318266 ZC3H13Q5T200 1668 aaKnown RBP11.91□□□□□ -0.5
PTPRA-202ENST00000318266 GSPT1P15170 499 aaKnown RBP11.9□□□□□ -0.5
PTPRA-202ENST00000318266 SIRT2Q8IXJ6 389 aa11.9□□□□□ -0.5
PTPRA-202ENST00000318266 NSFL1CQ9UNZ2 370 aaKnown RBP11.9□□□□□ -0.5
PTPRA-202ENST00000318266 CLTCQ00610 1675 aaKnown RBP11.9□□□□□ -0.5
PTPRA-202ENST00000318266 ZNF445P59923 1031 aa11.9□□□□□ -0.5
PTPRA-202ENST00000318266 GPT2Q8TD30 523 aa11.9□□□□□ -0.5
PTPRA-202ENST00000318266 ZBTB7BO15156 539 aaPredicted RBP11.9□□□□□ -0.51
PTPRA-202ENST00000318266 PTMAP06454 111 aaKnown RBP11.9□□□□□ -0.51
PTPRA-202ENST00000318266 TSPYL6Q8N831 410 aa11.89□□□□□ -0.51
PTPRA-202ENST00000318266 TSC1Q92574 1164 aa11.89□□□□□ -0.51
PTPRA-202ENST00000318266 STK26Q9P289 416 aa11.89□□□□□ -0.51
PTPRA-202ENST00000318266 DNTTIP2Q5QJE6 756 aaKnown RBP11.89□□□□□ -0.51
PTPRA-202ENST00000318266 NOL8Q76FK4 1167 aaKnown RBP11.89□□□□□ -0.51
PTPRA-202ENST00000318266 PRDM4Q9UKN5 801 aa11.89□□□□□ -0.51
PTPRA-202ENST00000318266 ZHX1Q9UKY1 873 aaPredicted RBP11.89□□□□□ -0.51
PTPRA-202ENST00000318266 SRPK2P78362 688 aaKnown RBP11.88□□□□□ -0.51
PTPRA-202ENST00000318266 NUCB2P80303 420 aa11.88□□□□□ -0.51
PTPRA-202ENST00000318266 OTUD7AQ8TE49 926 aaPredicted RBP11.88□□□□□ -0.51
PTPRA-202ENST00000318266 GCC1Q96CN9 775 aa11.88□□□□□ -0.51
PTPRA-202ENST00000318266 TMEM63CQ9P1W3 806 aa11.88□□□□□ -0.51
PTPRA-202ENST00000318266 ABCC11Q96J66 1382 aa11.88□□□□□ -0.51
PTPRA-202ENST00000318266 ZKSCAN5Q9Y2L8 839 aa11.88□□□□□ -0.51
PTPRA-202ENST00000318266 HMOX1P09601 288 aa11.87□□□□□ -0.51
PTPRA-202ENST00000318266 RABEP1Q15276 862 aa11.87□□□□□ -0.51
PTPRA-202ENST00000318266 ZNF500O60304 480 aaPredicted RBP11.86□□□□□ -0.51
PTPRA-202ENST00000318266 IBTKQ9P2D0 1353 aaPredicted RBP11.86□□□□□ -0.51
PTPRA-202ENST00000318266 A0A0U1RQG5 324 aaPredicted RBP11.86□□□□□ -0.51
PTPRA-202ENST00000318266 FAM177BA6PVY3 158 aa11.86□□□□□ -0.51
PTPRA-202ENST00000318266 PDLIM2Q96JY6 352 aa11.86□□□□□ -0.51
PTPRA-202ENST00000318266 TOM1O60784 492 aa11.86□□□□□ -0.51
PTPRA-202ENST00000318266 PRKAR2BP31323 418 aa11.86□□□□□ -0.51
PTPRA-202ENST00000318266 CLEC17AQ6ZS10 378 aa11.86□□□□□ -0.51
PTPRA-202ENST00000318266 EVC2Q86UK5 1308 aa11.85□□□□□ -0.51
PTPRA-202ENST00000318266 SMARCA5O60264 1052 aaPredicted RBP11.85□□□□□ -0.51
PTPRA-202ENST00000318266 DIAPH1O60610 1272 aaKnown RBP11.85□□□□□ -0.51
PTPRA-202ENST00000318266 PLEKHM2Q8IWE5 1019 aa11.85□□□□□ -0.51
PTPRA-202ENST00000318266 PODXL2Q9NZ53 605 aa11.85□□□□□ -0.51
PTPRA-202ENST00000318266 NEURL4Q96JN8 1562 aa11.85□□□□□ -0.51
PTPRA-202ENST00000318266 ZNF830Q96NB3 372 aaPredicted RBP11.85□□□□□ -0.51
PTPRA-202ENST00000318266 ZDHHC9Q9Y397 364 aa11.85□□□□□ -0.51
PTPRA-202ENST00000318266 SBNO2Q9Y2G9 1366 aa11.85□□□□□ -0.51
PTPRA-202ENST00000318266 VWDEQ8N2E2 1590 aa11.85□□□□□ -0.51
PTPRA-202ENST00000318266 MAP7D2Q96T17 732 aa11.84□□□□□ -0.51
PTPRA-202ENST00000318266 ALDH1L2Q3SY69 923 aa11.84□□□□□ -0.51
PTPRA-202ENST00000318266 USP26Q9BXU7 913 aa11.84□□□□□ -0.51
PTPRA-202ENST00000318266 CYP2E1P05181 493 aaPredicted RBP11.84□□□□□ -0.51
PTPRA-202ENST00000318266 GDPD2Q9HCC8 539 aa11.84□□□□□ -0.51
PTPRA-202ENST00000318266 ST18O60284 1047 aa11.83□□□□□ -0.52
PTPRA-202ENST00000318266 TERF1P54274 439 aa11.83□□□□□ -0.52
PTPRA-202ENST00000318266 HS1BP3Q53T59 392 aa11.83□□□□□ -0.52
PTPRA-202ENST00000318266 LRSAM1Q6UWE0 723 aa11.83□□□□□ -0.52
PTPRA-202ENST00000318266 C17orf53Q8N3J3 647 aaPredicted RBP11.83□□□□□ -0.52
PTPRA-202ENST00000318266 C14orf93Q9H972 538 aaKnown RBP11.83□□□□□ -0.52
PTPRA-202ENST00000318266 ANKRD36BQ8N2N9 1353 aa11.83□□□□□ -0.52
PTPRA-202ENST00000318266 VAMP4O75379 141 aa11.83□□□□□ -0.52
PTPRA-202ENST00000318266 MLECQ14165 292 aa11.83□□□□□ -0.52
PTPRA-202ENST00000318266 GGT6Q6P531 493 aa11.83□□□□□ -0.52
PTPRA-202ENST00000318266 MRPL50Q8N5N7 158 aaKnown RBP11.83□□□□□ -0.52
PTPRA-202ENST00000318266 PHACTR3Q96KR7 559 aa11.83□□□□□ -0.52
PTPRA-202ENST00000318266 CCDC39Q9UFE4 941 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms