RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 PLEKHG1Q9ULL1 1385 aa11.44□□□□□ -0.58
PTPRE-202ENST00000306042 RRP1P56182 461 aaKnown RBP11.44□□□□□ -0.58
PTPRE-202ENST00000306042 ZNF335Q9H4Z2 1342 aaPredicted RBP11.43□□□□□ -0.58
PTPRE-202ENST00000306042 MIS18AQ9NYP9 233 aa11.43□□□□□ -0.58
PTPRE-202ENST00000306042 ARHGEF10O15013 1369 aa11.43□□□□□ -0.58
PTPRE-202ENST00000306042 DDX17Q92841 729 aaKnown RBP11.43□□□□□ -0.58
PTPRE-202ENST00000306042 ACSBG1Q96GR2 724 aa11.43□□□□□ -0.58
PTPRE-202ENST00000306042 ADGBQ8N7X0 1667 aa11.43□□□□□ -0.58
PTPRE-202ENST00000306042 GNL2Q13823 731 aaKnown RBP11.43□□□□□ -0.58
PTPRE-202ENST00000306042 DCTN1Q14203 1278 aa11.43□□□□□ -0.58
PTPRE-202ENST00000306042 FMNL2Q96PY5 1086 aa11.43□□□□□ -0.58
PTPRE-202ENST00000306042 TPRNQ4KMQ1 711 aa11.42□□□□□ -0.58
PTPRE-202ENST00000306042 CNNM1Q9NRU3 951 aa11.42□□□□□ -0.58
PTPRE-202ENST00000306042 ARHGEF12Q9NZN5 1544 aa11.42□□□□□ -0.58
PTPRE-202ENST00000306042 THUMPD2Q9BTF0 503 aaKnown RBP11.42□□□□□ -0.58
PTPRE-202ENST00000306042 TEX13AQ9BXU3 409 aaPredicted RBP11.42□□□□□ -0.58
PTPRE-202ENST00000306042 SRCIN1Q9C0H9 1055 aa11.42□□□□□ -0.58
PTPRE-202ENST00000306042 ZRANB1Q9UGI0 708 aa11.42□□□□□ -0.58
PTPRE-202ENST00000306042 ABCC11Q96J66 1382 aa11.42□□□□□ -0.58
PTPRE-202ENST00000306042 ERVK-7P63135 1459 aa11.42□□□□□ -0.58
PTPRE-202ENST00000306042 USP21Q9UK80 565 aa11.41□□□□□ -0.58
PTPRE-202ENST00000306042 MPHOSPH8Q99549 860 aa11.41□□□□□ -0.58
PTPRE-202ENST00000306042 WDHD1O75717 1129 aaPredicted RBP11.4□□□□□ -0.58
PTPRE-202ENST00000306042 HSCBQ8IWL3 235 aa11.4□□□□□ -0.58
PTPRE-202ENST00000306042 SMARCC1Q92922 1105 aaPredicted RBP11.4□□□□□ -0.58
PTPRE-202ENST00000306042 CDCA7LQ96GN5 454 aa11.4□□□□□ -0.58
PTPRE-202ENST00000306042 CRBNQ96SW2 442 aa11.4□□□□□ -0.58
PTPRE-202ENST00000306042 DIAPH3Q9NSV4 1193 aa11.4□□□□□ -0.58
PTPRE-202ENST00000306042 WWC1Q8IX03 1113 aa11.4□□□□□ -0.58
PTPRE-202ENST00000306042 ZNF428Q96B54 188 aa11.4□□□□□ -0.58
PTPRE-202ENST00000306042 SIRT1Q96EB6 747 aa11.4□□□□□ -0.58
PTPRE-202ENST00000306042 FLT4P35916 1363 aa11.4□□□□□ -0.58
PTPRE-202ENST00000306042 APPP05067 770 aa11.4□□□□□ -0.59
PTPRE-202ENST00000306042 CDCA7Q9BWT1 371 aaPredicted RBP11.4□□□□□ -0.59
PTPRE-202ENST00000306042 DUSP27Q5VZP5 1158 aa11.39□□□□□ -0.59
PTPRE-202ENST00000306042 CDK11BP21127 795 aaKnown RBP11.39□□□□□ -0.59
PTPRE-202ENST00000306042 PHF14O94880 888 aa11.39□□□□□ -0.59
PTPRE-202ENST00000306042 CCT4P50991 539 aaKnown RBP11.39□□□□□ -0.59
PTPRE-202ENST00000306042 CCDC57Q2TAC2 916 aa11.39□□□□□ -0.59
PTPRE-202ENST00000306042 CT47B1P0C2W7 299 aaPredicted RBP11.38□□□□□ -0.59
PTPRE-202ENST00000306042 ABCA9Q8IUA7 1624 aa11.38□□□□□ -0.59
PTPRE-202ENST00000306042 RAD21O60216 631 aa11.38□□□□□ -0.59
PTPRE-202ENST00000306042 RFC4P35249 363 aa11.38□□□□□ -0.59
PTPRE-202ENST00000306042 CCDC27Q2M243 656 aa11.38□□□□□ -0.59
PTPRE-202ENST00000306042 KAT6BQ8WYB5 2073 aa11.38□□□□□ -0.59
PTPRE-202ENST00000306042 SURF6O75683 361 aaKnown RBP11.38□□□□□ -0.59
PTPRE-202ENST00000306042 PANK1Q8TE04 598 aa11.38□□□□□ -0.59
PTPRE-202ENST00000306042 IP6K1Q92551 441 aa11.38□□□□□ -0.59
PTPRE-202ENST00000306042 ERC2O15083 957 aa11.37□□□□□ -0.59
PTPRE-202ENST00000306042 RUFY2Q8WXA3 655 aa11.37□□□□□ -0.59
PTPRE-202ENST00000306042 GNL3LQ9NVN8 582 aaKnown RBP11.37□□□□□ -0.59
PTPRE-202ENST00000306042 CLASRPQ8N2M8 674 aaKnown RBP11.37□□□□□ -0.59
PTPRE-202ENST00000306042 A0A1W2PP64 1363 aa11.37□□□□□ -0.59
PTPRE-202ENST00000306042 HSP90AB3PQ58FF7 597 aa11.37□□□□□ -0.59
PTPRE-202ENST00000306042 EXOC6Q8TAG9 804 aa11.37□□□□□ -0.59
PTPRE-202ENST00000306042 IFT57Q9NWB7 429 aa11.37□□□□□ -0.59
PTPRE-202ENST00000306042 CTDP1Q9Y5B0 961 aaPredicted RBP11.37□□□□□ -0.59
PTPRE-202ENST00000306042 GNAI2P04899 355 aa11.37□□□□□ -0.59
PTPRE-202ENST00000306042 TESK2Q96S53 571 aa11.37□□□□□ -0.59
PTPRE-202ENST00000306042 MFAP1P55081 439 aaKnown RBP11.36□□□□□ -0.59
PTPRE-202ENST00000306042 FAM98CQ17RN3 349 aaKnown RBP11.36□□□□□ -0.59
PTPRE-202ENST00000306042 NOB1Q9ULX3 412 aaKnown RBP11.36□□□□□ -0.59
PTPRE-202ENST00000306042 METP08581 1390 aa11.36□□□□□ -0.59
PTPRE-202ENST00000306042 EIF4A2Q14240 407 aaKnown RBP11.36□□□□□ -0.59
PTPRE-202ENST00000306042 ATP6V1AP38606 617 aa11.36□□□□□ -0.59
PTPRE-202ENST00000306042 CENPQQ7L2Z9 268 aaPredicted RBP11.36□□□□□ -0.59
PTPRE-202ENST00000306042 POLKQ9UBT6 870 aa11.36□□□□□ -0.59
PTPRE-202ENST00000306042 ABCC3O15438 1527 aa11.36□□□□□ -0.59
PTPRE-202ENST00000306042 GOLGA6L4A6NEF3 574 aa11.36□□□□□ -0.59
PTPRE-202ENST00000306042 LARP1Q6PKG0 1096 aaKnown RBP11.36□□□□□ -0.59
PTPRE-202ENST00000306042 COL17A1Q9UMD9 1497 aaPredicted RBP11.36□□□□□ -0.59
PTPRE-202ENST00000306042 SHROOM2Q13796 1616 aa11.36□□□□□ -0.59
PTPRE-202ENST00000306042 MAP3K19Q56UN5 1328 aa11.35□□□□□ -0.59
PTPRE-202ENST00000306042 A0A087WZG4 1122 aa11.35□□□□□ -0.59
PTPRE-202ENST00000306042 HOXC9P31274 260 aa11.35□□□□□ -0.59
PTPRE-202ENST00000306042 IGHMBP2P38935 993 aaKnown RBP11.35□□□□□ -0.59
PTPRE-202ENST00000306042 PLEKHG3A1L390 1219 aa11.35□□□□□ -0.59
PTPRE-202ENST00000306042 TBC1D2BQ9UPU7 963 aa11.35□□□□□ -0.59
PTPRE-202ENST00000306042 SNRPA1P09661 255 aaKnown RBP11.34□□□□□ -0.59
PTPRE-202ENST00000306042 WASHC4Q2M389 1173 aa11.34□□□□□ -0.59
PTPRE-202ENST00000306042 AKAP4Q5JQC9 854 aa11.34□□□□□ -0.59
PTPRE-202ENST00000306042 DBF4Q9UBU7 674 aaPredicted RBP11.34□□□□□ -0.59
PTPRE-202ENST00000306042 PIK3C2GO75747 1445 aa11.34□□□□□ -0.59
PTPRE-202ENST00000306042 AAMPQ13685 434 aa11.34□□□□□ -0.59
PTPRE-202ENST00000306042 CDC42BPAQ5VT25 1732 aa11.34□□□□□ -0.59
PTPRE-202ENST00000306042 ERC1Q8IUD2 1116 aa11.34□□□□□ -0.59
PTPRE-202ENST00000306042 CCDC85AQ96PX6 553 aaPredicted RBP11.34□□□□□ -0.59
PTPRE-202ENST00000306042 POLD1P28340 1107 aa11.34□□□□□ -0.59
PTPRE-202ENST00000306042 TFCP2L1Q9NZI6 479 aa11.34□□□□□ -0.59
PTPRE-202ENST00000306042 TRMT112Q9UI30 125 aaKnown RBP11.34□□□□□ -0.59
PTPRE-202ENST00000306042 PCDH11XQ9BZA7 1347 aa11.33□□□□□ -0.6
PTPRE-202ENST00000306042 PCDH11YQ9BZA8 1340 aa11.33□□□□□ -0.6
PTPRE-202ENST00000306042 PIK3R4Q99570 1358 aa11.33□□□□□ -0.6
PTPRE-202ENST00000306042 PLEKHH1Q9ULM0 1364 aa11.33□□□□□ -0.6
PTPRE-202ENST00000306042 ZNF772Q68DY9 489 aaPredicted RBP11.33□□□□□ -0.6
PTPRE-202ENST00000306042 HYPKQ9NX55 129 aa11.33□□□□□ -0.6
PTPRE-202ENST00000306042 EDC4Q6P2E9 1401 aaKnown RBP11.33□□□□□ -0.6
PTPRE-202ENST00000306042 A2ML1A8K2U0 1454 aa11.33□□□□□ -0.6
PTPRE-202ENST00000306042 RPGRQ92834 1020 aaKnown RBP11.33□□□□□ -0.6
PTPRE-202ENST00000306042 AMER1Q5JTC6 1135 aaPredicted RBP11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms