RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 C19orf44Q9H6X5 657 aa18.58■□□□□ 0.57
C9orf3-202ENST00000297979 MAP3K19Q56UN5 1328 aa18.58■□□□□ 0.56
C9orf3-202ENST00000297979 SBNO1A3KN83 1393 aa18.58■□□□□ 0.56
C9orf3-202ENST00000297979 EIF4A2Q14240 407 aaKnown RBP18.58■□□□□ 0.56
C9orf3-202ENST00000297979 TRIM35Q9UPQ4 493 aa18.58■□□□□ 0.56
C9orf3-202ENST00000297979 RIPK4P57078 832 aa18.57■□□□□ 0.56
C9orf3-202ENST00000297979 FLT4P35916 1363 aa18.57■□□□□ 0.56
C9orf3-202ENST00000297979 NCOA3Q9Y6Q9 1424 aa18.57■□□□□ 0.56
C9orf3-202ENST00000297979 PSME1Q06323 249 aa18.56■□□□□ 0.56
C9orf3-202ENST00000297979 MYH16Q9H6N6 1097 aa18.56■□□□□ 0.56
C9orf3-202ENST00000297979 KIF1AQ12756 1690 aa18.56■□□□□ 0.56
C9orf3-202ENST00000297979 TMEM94Q12767 1356 aa18.56■□□□□ 0.56
C9orf3-202ENST00000297979 PLIN1O60240 522 aa18.56■□□□□ 0.56
C9orf3-202ENST00000297979 B4GALNT3Q6L9W6 998 aa18.56■□□□□ 0.56
C9orf3-202ENST00000297979 RGPD1P0DJD0 1748 aa18.56■□□□□ 0.56
C9orf3-202ENST00000297979 HSP90AB2PQ58FF8 381 aa18.55■□□□□ 0.56
C9orf3-202ENST00000297979 C1orf167Q5SNV9 1468 aa18.55■□□□□ 0.56
C9orf3-202ENST00000297979 STRCQ7RTU9 1775 aa18.55■□□□□ 0.56
C9orf3-202ENST00000297979 NUTM2GQ5VZR2 741 aa18.55■□□□□ 0.56
C9orf3-202ENST00000297979 ORAI2Q96SN7 254 aa18.55■□□□□ 0.56
C9orf3-202ENST00000297979 DCCP43146 1447 aa18.55■□□□□ 0.56
C9orf3-202ENST00000297979 NFE2L2Q16236 605 aa18.54■□□□□ 0.56
C9orf3-202ENST00000297979 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.54■□□□□ 0.56
C9orf3-202ENST00000297979 IL16Q14005 1332 aa18.54■□□□□ 0.56
C9orf3-202ENST00000297979 PHACTR3Q96KR7 559 aa18.54■□□□□ 0.56
C9orf3-202ENST00000297979 KIF24Q5T7B8 1368 aa18.54■□□□□ 0.56
C9orf3-202ENST00000297979 AMPHP49418 695 aa18.53■□□□□ 0.56
C9orf3-202ENST00000297979 EXOC6Q8TAG9 804 aa18.53■□□□□ 0.56
C9orf3-202ENST00000297979 ATF3P18847 181 aa18.51■□□□□ 0.55
C9orf3-202ENST00000297979 MST1RQ04912 1400 aa18.51■□□□□ 0.55
C9orf3-202ENST00000297979 ARHGEF10O15013 1369 aa18.51■□□□□ 0.55
C9orf3-202ENST00000297979 SULT6B1Q6IMI4 303 aa18.5■□□□□ 0.55
C9orf3-202ENST00000297979 CCDC136Q96JN2 1154 aa18.5■□□□□ 0.55
C9orf3-202ENST00000297979 FANCIQ9NVI1 1328 aa18.5■□□□□ 0.55
C9orf3-202ENST00000297979 FOXO3O43524 673 aa18.5■□□□□ 0.55
C9orf3-202ENST00000297979 PDIA4P13667 645 aaKnown RBP18.5■□□□□ 0.55
C9orf3-202ENST00000297979 TRPM3Q9HCF6 1732 aaPredicted RBP18.5■□□□□ 0.55
C9orf3-202ENST00000297979 NFAT5O94916 1531 aa18.49■□□□□ 0.55
C9orf3-202ENST00000297979 AEBP1Q8IUX7 1158 aa18.49■□□□□ 0.55
C9orf3-202ENST00000297979 DLG5Q8TDM6 1919 aa18.49■□□□□ 0.55
C9orf3-202ENST00000297979 LTN1O94822 1766 aa18.49■□□□□ 0.55
C9orf3-202ENST00000297979 BCAR3O75815 825 aa18.49■□□□□ 0.55
C9orf3-202ENST00000297979 RTL1A6NKG5 1358 aa18.49■□□□□ 0.55
C9orf3-202ENST00000297979 HOXC9P31274 260 aa18.48■□□□□ 0.55
C9orf3-202ENST00000297979 LMOD3Q0VAK6 560 aa18.48■□□□□ 0.55
C9orf3-202ENST00000297979 CRBNQ96SW2 442 aa18.48■□□□□ 0.55
C9orf3-202ENST00000297979 C20orf194Q5TEA3 1177 aa18.47■□□□□ 0.55
C9orf3-202ENST00000297979 TSR2Q969E8 191 aaKnown RBP18.47■□□□□ 0.55
C9orf3-202ENST00000297979 MSH6P52701 1360 aa18.46■□□□□ 0.55
C9orf3-202ENST00000297979 XPCQ01831 940 aaPredicted RBP18.46■□□□□ 0.55
C9orf3-202ENST00000297979 CALD1Q05682 793 aaKnown RBP18.46■□□□□ 0.55
C9orf3-202ENST00000297979 XIRP1Q702N8 1843 aaKnown RBP18.46■□□□□ 0.55
C9orf3-202ENST00000297979 CT47B1P0C2W7 299 aaPredicted RBP18.46■□□□□ 0.55
C9orf3-202ENST00000297979 CADPS2Q86UW7 1296 aa18.46■□□□□ 0.55
C9orf3-202ENST00000297979 KCNH5Q8NCM2 988 aa18.46■□□□□ 0.55
C9orf3-202ENST00000297979 RARSP54136 660 aaKnown RBP18.45■□□□□ 0.54
C9orf3-202ENST00000297979 KRT28Q7Z3Y7 464 aa18.45■□□□□ 0.54
C9orf3-202ENST00000297979 IGSF1Q8N6C5 1336 aa18.45■□□□□ 0.54
C9orf3-202ENST00000297979 SLIT3O75094 1523 aa18.45■□□□□ 0.54
C9orf3-202ENST00000297979 KDRP35968 1356 aa18.45■□□□□ 0.54
C9orf3-202ENST00000297979 PHRF1Q9P1Y6 1649 aaKnown RBP18.44■□□□□ 0.54
C9orf3-202ENST00000297979 EXOSC9Q06265 439 aaKnown RBP18.43■□□□□ 0.54
C9orf3-202ENST00000297979 EYA1Q99502 592 aa18.43■□□□□ 0.54
C9orf3-202ENST00000297979 ALS2Q96Q42 1657 aa18.42■□□□□ 0.54
C9orf3-202ENST00000297979 THUMPD2Q9BTF0 503 aaKnown RBP18.41■□□□□ 0.54
C9orf3-202ENST00000297979 USP19O94966 1318 aa18.41■□□□□ 0.54
C9orf3-202ENST00000297979 CANXP27824 592 aaKnown RBP18.41■□□□□ 0.54
C9orf3-202ENST00000297979 IP6K1Q92551 441 aa18.41■□□□□ 0.54
C9orf3-202ENST00000297979 IFT57Q9NWB7 429 aa18.41■□□□□ 0.54
C9orf3-202ENST00000297979 LMOD2Q6P5Q4 547 aa18.4■□□□□ 0.54
C9orf3-202ENST00000297979 GNAI1P63096 354 aa18.4■□□□□ 0.54
C9orf3-202ENST00000297979 PDE3AQ14432 1141 aa18.4■□□□□ 0.54
C9orf3-202ENST00000297979 ZNF335Q9H4Z2 1342 aaPredicted RBP18.39■□□□□ 0.53
C9orf3-202ENST00000297979 LAS1LQ9Y4W2 734 aaKnown RBP18.39■□□□□ 0.53
C9orf3-202ENST00000297979 GCP02774 474 aa18.39■□□□□ 0.53
C9orf3-202ENST00000297979 NPHP3Q7Z494 1330 aa18.38■□□□□ 0.53
C9orf3-202ENST00000297979 FAM83GA6ND36 823 aa18.38■□□□□ 0.53
C9orf3-202ENST00000297979 LTV1Q96GA3 475 aaPredicted RBP18.38■□□□□ 0.53
C9orf3-202ENST00000297979 ZNF853P0CG23 659 aa18.37■□□□□ 0.53
C9orf3-202ENST00000297979 FRAT1Q92837 279 aaPredicted RBP18.37■□□□□ 0.53
C9orf3-202ENST00000297979 BCL2L13Q9BXK5 485 aa18.37■□□□□ 0.53
C9orf3-202ENST00000297979 TSHZ2Q9NRE2 1034 aa18.37■□□□□ 0.53
C9orf3-202ENST00000297979 PDE4CQ08493 712 aa18.36■□□□□ 0.53
C9orf3-202ENST00000297979 CFAP44Q96MT7 982 aa18.36■□□□□ 0.53
C9orf3-202ENST00000297979 DCTN1Q14203 1278 aa18.36■□□□□ 0.53
C9orf3-202ENST00000297979 ARHGEF25Q86VW2 580 aa18.36■□□□□ 0.53
C9orf3-202ENST00000297979 HOMEZQ8IX15 550 aa18.36■□□□□ 0.53
C9orf3-202ENST00000297979 ZBTB7CA1YPR0 619 aa18.35■□□□□ 0.53
C9orf3-202ENST00000297979 MTHFSDQ2M296 383 aaKnown RBP18.35■□□□□ 0.53
C9orf3-202ENST00000297979 GAS2L2Q8NHY3 880 aa18.35■□□□□ 0.53
C9orf3-202ENST00000297979 DDX17Q92841 729 aaKnown RBP18.35■□□□□ 0.53
C9orf3-202ENST00000297979 MBIPQ9NS73 344 aa18.35■□□□□ 0.53
C9orf3-202ENST00000297979 SMC4Q9NTJ3 1288 aa18.34■□□□□ 0.53
C9orf3-202ENST00000297979 MED1Q15648 1581 aaPredicted RBP18.34■□□□□ 0.53
C9orf3-202ENST00000297979 PXDNQ92626 1479 aa18.34■□□□□ 0.53
C9orf3-202ENST00000297979 TNS3Q68CZ2 1445 aa18.34■□□□□ 0.53
C9orf3-202ENST00000297979 SSH1Q8WYL5 1049 aa18.33■□□□□ 0.52
C9orf3-202ENST00000297979 ZNF428Q96B54 188 aa18.33■□□□□ 0.52
C9orf3-202ENST00000297979 PANK1Q8TE04 598 aa18.32■□□□□ 0.52
C9orf3-202ENST00000297979 MCM10Q7L590 875 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms