RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 VIRMAQ69YN4 1812 aaKnown RBP23.34■■□□□ 1.33
SHKBP1-201ENST00000291842 MON2Q7Z3U7 1717 aa23.34■■□□□ 1.33
SHKBP1-201ENST00000291842 IPO8O15397 1037 aaKnown RBP23.34■■□□□ 1.33
SHKBP1-201ENST00000291842 ACEP12821 1306 aa23.33■■□□□ 1.33
SHKBP1-201ENST00000291842 SOX12O15370 315 aa23.33■■□□□ 1.32
SHKBP1-201ENST00000291842 DCTN1Q14203 1278 aa23.33■■□□□ 1.32
SHKBP1-201ENST00000291842 ALDH1L2Q3SY69 923 aa23.33■■□□□ 1.32
SHKBP1-201ENST00000291842 MBIPQ9NS73 344 aa23.32■■□□□ 1.32
SHKBP1-201ENST00000291842 VAMP4O75379 141 aa23.32■■□□□ 1.32
SHKBP1-201ENST00000291842 ITSN1Q15811 1721 aa23.31■■□□□ 1.32
SHKBP1-201ENST00000291842 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.31■■□□□ 1.32
SHKBP1-201ENST00000291842 ZBTB40Q9NUA8 1239 aa23.31■■□□□ 1.32
SHKBP1-201ENST00000291842 C3P01024 1663 aa23.31■■□□□ 1.32
SHKBP1-201ENST00000291842 TTC21BQ7Z4L5 1316 aa23.31■■□□□ 1.32
SHKBP1-201ENST00000291842 AKAP12Q02952 1782 aa23.31■■□□□ 1.32
SHKBP1-201ENST00000291842 AEBP1Q8IUX7 1158 aa23.3■■□□□ 1.32
SHKBP1-201ENST00000291842 GNAI1P63096 354 aa23.3■■□□□ 1.32
SHKBP1-201ENST00000291842 HDAC1Q13547 482 aaPredicted RBP23.29■■□□□ 1.32
SHKBP1-201ENST00000291842 IFT57Q9NWB7 429 aa23.29■■□□□ 1.32
SHKBP1-201ENST00000291842 PLEKHG1Q9ULL1 1385 aa23.29■■□□□ 1.32
SHKBP1-201ENST00000291842 CALD1Q05682 793 aaKnown RBP23.28■■□□□ 1.32
SHKBP1-201ENST00000291842 EIF4A2Q14240 407 aaKnown RBP23.28■■□□□ 1.32
SHKBP1-201ENST00000291842 PTPRUQ92729 1446 aa23.27■■□□□ 1.32
SHKBP1-201ENST00000291842 ZNF853P0CG23 659 aa23.27■■□□□ 1.32
SHKBP1-201ENST00000291842 SULT6B1Q6IMI4 303 aa23.27■■□□□ 1.32
SHKBP1-201ENST00000291842 MRPL50Q8N5N7 158 aaKnown RBP23.27■■□□□ 1.32
SHKBP1-201ENST00000291842 C8orf58Q8NAV2 365 aa23.27■■□□□ 1.32
SHKBP1-201ENST00000291842 EID1Q9Y6B2 187 aa23.27■■□□□ 1.32
SHKBP1-201ENST00000291842 AMOTL2Q9Y2J4 779 aa23.26■■□□□ 1.31
SHKBP1-201ENST00000291842 DLG5Q8TDM6 1919 aa23.25■■□□□ 1.31
SHKBP1-201ENST00000291842 TWISTNBQ3B726 338 aaPredicted RBP23.25■■□□□ 1.31
SHKBP1-201ENST00000291842 HSP90AB2PQ58FF8 381 aa23.25■■□□□ 1.31
SHKBP1-201ENST00000291842 CFAP44Q96MT7 982 aa23.25■■□□□ 1.31
SHKBP1-201ENST00000291842 C1orf115Q9H7X2 142 aa23.24■■□□□ 1.31
SHKBP1-201ENST00000291842 USP35Q9P2H5 1018 aa23.24■■□□□ 1.31
SHKBP1-201ENST00000291842 PLEKHG3A1L390 1219 aa23.23■■□□□ 1.31
SHKBP1-201ENST00000291842 NFKBIBQ15653 356 aa23.23■■□□□ 1.31
SHKBP1-201ENST00000291842 ZNF428Q96B54 188 aa23.23■■□□□ 1.31
SHKBP1-201ENST00000291842 LMOD3Q0VAK6 560 aa23.23■■□□□ 1.31
SHKBP1-201ENST00000291842 SMC5Q8IY18 1101 aa23.22■■□□□ 1.31
SHKBP1-201ENST00000291842 BCL11AQ9H165 835 aa23.22■■□□□ 1.31
SHKBP1-201ENST00000291842 USP6P35125 1406 aa23.21■■□□□ 1.31
SHKBP1-201ENST00000291842 BRPF1P55201 1214 aaPredicted RBP23.21■■□□□ 1.31
SHKBP1-201ENST00000291842 UPF2Q9HAU5 1272 aaKnown RBP23.21■■□□□ 1.31
SHKBP1-201ENST00000291842 ZBTB7BO15156 539 aaPredicted RBP23.2■■□□□ 1.3
SHKBP1-201ENST00000291842 MCM10Q7L590 875 aa23.19■■□□□ 1.3
SHKBP1-201ENST00000291842 OVOS2A0A0J9YW53 1432 aa23.19■■□□□ 1.3
SHKBP1-201ENST00000291842 OVOS2Q6IE36 1432 aa23.19■■□□□ 1.3
SHKBP1-201ENST00000291842 KRT24Q2M2I5 525 aa23.19■■□□□ 1.3
SHKBP1-201ENST00000291842 TBC1D32Q96NH3 1257 aa23.19■■□□□ 1.3
SHKBP1-201ENST00000291842 LNPKQ9C0E8 428 aa23.19■■□□□ 1.3
SHKBP1-201ENST00000291842 NRKQ7Z2Y5 1582 aa23.18■■□□□ 1.3
SHKBP1-201ENST00000291842 TOPAZ1Q8N9V7 1692 aa23.17■■□□□ 1.3
SHKBP1-201ENST00000291842 ARHGAP45Q92619 1136 aa23.16■■□□□ 1.3
SHKBP1-201ENST00000291842 MFAP1P55081 439 aaKnown RBP23.15■■□□□ 1.3
SHKBP1-201ENST00000291842 NGDNQ8NEJ9 315 aaKnown RBP23.15■■□□□ 1.3
SHKBP1-201ENST00000291842 PTCH1Q13635 1447 aa23.15■■□□□ 1.3
SHKBP1-201ENST00000291842 NUCB1Q02818 461 aa23.15■■□□□ 1.3
SHKBP1-201ENST00000291842 PEAK1Q9H792 1746 aa23.15■■□□□ 1.3
SHKBP1-201ENST00000291842 TBX22Q9Y458 520 aa23.14■■□□□ 1.29
SHKBP1-201ENST00000291842 MAP3K19Q56UN5 1328 aa23.13■■□□□ 1.29
SHKBP1-201ENST00000291842 BECN1Q14457 450 aa23.13■■□□□ 1.29
SHKBP1-201ENST00000291842 ABCC4O15439 1325 aa23.13■■□□□ 1.29
SHKBP1-201ENST00000291842 FRAT2O75474 233 aaPredicted RBP23.13■■□□□ 1.29
SHKBP1-201ENST00000291842 SLKQ9H2G2 1235 aaPredicted RBP23.13■■□□□ 1.29
SHKBP1-201ENST00000291842 CHD1LQ86WJ1 897 aa23.12■■□□□ 1.29
SHKBP1-201ENST00000291842 ANKRD45Q5TZF3 282 aa23.12■■□□□ 1.29
SHKBP1-201ENST00000291842 THEMISQ8N1K5 641 aaPredicted RBP23.11■■□□□ 1.29
SHKBP1-201ENST00000291842 SSH2Q76I76 1423 aa23.11■■□□□ 1.29
SHKBP1-201ENST00000291842 USP31Q70CQ4 1352 aa23.11■■□□□ 1.29
SHKBP1-201ENST00000291842 PIK3R4Q99570 1358 aa23.11■■□□□ 1.29
SHKBP1-201ENST00000291842 FOXO3O43524 673 aa23.11■■□□□ 1.29
SHKBP1-201ENST00000291842 NUTM2GQ5VZR2 741 aa23.11■■□□□ 1.29
SHKBP1-201ENST00000291842 SIRT2Q8IXJ6 389 aa23.11■■□□□ 1.29
SHKBP1-201ENST00000291842 MIS18AQ9NYP9 233 aa23.11■■□□□ 1.29
SHKBP1-201ENST00000291842 RGPD8O14715 1765 aaPredicted RBP23.1■■□□□ 1.29
SHKBP1-201ENST00000291842 SLIT1O75093 1534 aa23.1■■□□□ 1.29
SHKBP1-201ENST00000291842 ARHGAP23Q9P227 1491 aa23.09■■□□□ 1.29
SHKBP1-201ENST00000291842 C22orf23Q9BZE7 217 aa23.08■■□□□ 1.29
SHKBP1-201ENST00000291842 API5Q9BZZ5 524 aaKnown RBP23.08■■□□□ 1.29
SHKBP1-201ENST00000291842 CHL1O00533 1208 aa23.08■■□□□ 1.29
SHKBP1-201ENST00000291842 TBC1D2Q9BYX2 928 aa23.08■■□□□ 1.29
SHKBP1-201ENST00000291842 NALCNQ8IZF0 1738 aa23.07■■□□□ 1.28
SHKBP1-201ENST00000291842 KCNA6P17658 529 aa23.07■■□□□ 1.28
SHKBP1-201ENST00000291842 AMPHP49418 695 aa23.07■■□□□ 1.28
SHKBP1-201ENST00000291842 CHMP4BQ9H444 224 aaKnown RBP23.07■■□□□ 1.28
SHKBP1-201ENST00000291842 TTC21AQ8NDW8 1320 aa23.07■■□□□ 1.28
SHKBP1-201ENST00000291842 DIP2AQ14689 1571 aa23.06■■□□□ 1.28
SHKBP1-201ENST00000291842 SPRYD3Q8NCJ5 442 aa23.06■■□□□ 1.28
SHKBP1-201ENST00000291842 FER1L4A9Z1Z3 1794 aa23.06■■□□□ 1.28
SHKBP1-201ENST00000291842 MTHFSDQ2M296 383 aaKnown RBP23.06■■□□□ 1.28
SHKBP1-201ENST00000291842 NLRP6P59044 892 aa23.05■■□□□ 1.28
SHKBP1-201ENST00000291842 GCC1Q96CN9 775 aa23.05■■□□□ 1.28
SHKBP1-201ENST00000291842 EYA1Q99502 592 aa23.04■■□□□ 1.28
SHKBP1-201ENST00000291842 RIMS1Q86UR5 1692 aaKnown RBP23.04■■□□□ 1.28
SHKBP1-201ENST00000291842 RGPD1P0DJD0 1748 aa23.03■■□□□ 1.28
SHKBP1-201ENST00000291842 FLT4P35916 1363 aa23.02■■□□□ 1.28
SHKBP1-201ENST00000291842 TRHP20396 242 aaPredicted RBP23.02■■□□□ 1.28
SHKBP1-201ENST00000291842 RBM33Q96EV2 1170 aaKnown RBP23.02■■□□□ 1.28
SHKBP1-201ENST00000291842 SBNO1A3KN83 1393 aa23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms