RNA–Protein interactions for RNA: ENST00000276573.11

TRIM55-201, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 1,960 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-201ENST00000276573 PANK1Q8TE04 598 aa12.37□□□□□ -0.43
TRIM55-201ENST00000276573 SBNO1A3KN83 1393 aa12.37□□□□□ -0.43
TRIM55-201ENST00000276573 PIK3C2AO00443 1686 aa12.36□□□□□ -0.43
TRIM55-201ENST00000276573 LMOD3Q0VAK6 560 aa12.36□□□□□ -0.43
TRIM55-201ENST00000276573 AEBP1Q8IUX7 1158 aa12.36□□□□□ -0.43
TRIM55-201ENST00000276573 KDM2BQ8NHM5 1336 aa12.36□□□□□ -0.43
TRIM55-201ENST00000276573 PAK3O75914 559 aaPredicted RBP12.36□□□□□ -0.43
TRIM55-201ENST00000276573 AMPHP49418 695 aa12.36□□□□□ -0.43
TRIM55-201ENST00000276573 ESCO1Q5FWF5 840 aa12.36□□□□□ -0.43
TRIM55-201ENST00000276573 NUTM2GQ5VZR2 741 aa12.36□□□□□ -0.43
TRIM55-201ENST00000276573 C14orf37Q86TY3 774 aa12.36□□□□□ -0.43
TRIM55-201ENST00000276573 PROSER2Q86WR7 435 aaPredicted RBP12.36□□□□□ -0.43
TRIM55-201ENST00000276573 BCL2L13Q9BXK5 485 aa12.36□□□□□ -0.43
TRIM55-201ENST00000276573 ZNF853P0CG23 659 aa12.35□□□□□ -0.43
TRIM55-201ENST00000276573 CENPQQ7L2Z9 268 aaPredicted RBP12.35□□□□□ -0.43
TRIM55-201ENST00000276573 THUMPD2Q9BTF0 503 aaKnown RBP12.35□□□□□ -0.43
TRIM55-201ENST00000276573 COG6Q9Y2V7 657 aa12.35□□□□□ -0.43
TRIM55-201ENST00000276573 FLT4P35916 1363 aa12.35□□□□□ -0.43
TRIM55-201ENST00000276573 TCERG1O14776 1098 aaKnown RBP12.34□□□□□ -0.43
TRIM55-201ENST00000276573 GNAI1P63096 354 aa12.34□□□□□ -0.43
TRIM55-201ENST00000276573 PSME1Q06323 249 aa12.34□□□□□ -0.43
TRIM55-201ENST00000276573 SSH1Q8WYL5 1049 aa12.34□□□□□ -0.43
TRIM55-201ENST00000276573 IFT57Q9NWB7 429 aa12.34□□□□□ -0.43
TRIM55-201ENST00000276573 LAS1LQ9Y4W2 734 aaKnown RBP12.34□□□□□ -0.43
TRIM55-201ENST00000276573 NWD1Q149M9 1564 aa12.34□□□□□ -0.43
TRIM55-201ENST00000276573 AAMPQ13685 434 aa12.34□□□□□ -0.43
TRIM55-201ENST00000276573 ZKSCAN2Q63HK3 967 aa12.34□□□□□ -0.43
TRIM55-201ENST00000276573 TNNQ9UQP3 1299 aa12.34□□□□□ -0.43
TRIM55-201ENST00000276573 KIF24Q5T7B8 1368 aa12.33□□□□□ -0.44
TRIM55-201ENST00000276573 RLBP1P12271 317 aa12.33□□□□□ -0.44
TRIM55-201ENST00000276573 ARHGEF10O15013 1369 aa12.33□□□□□ -0.44
TRIM55-201ENST00000276573 RGPD1P0DJD0 1748 aa12.33□□□□□ -0.44
TRIM55-201ENST00000276573 USP54Q70EL1 1684 aa12.32□□□□□ -0.44
TRIM55-201ENST00000276573 MS4A1P11836 297 aa12.32□□□□□ -0.44
TRIM55-201ENST00000276573 CFAP44Q96MT7 982 aa12.32□□□□□ -0.44
TRIM55-201ENST00000276573 SMC4Q9NTJ3 1288 aa12.32□□□□□ -0.44
TRIM55-201ENST00000276573 FAM83GA6ND36 823 aa12.32□□□□□ -0.44
TRIM55-201ENST00000276573 HOXC9P31274 260 aa12.32□□□□□ -0.44
TRIM55-201ENST00000276573 ALDH1L2Q3SY69 923 aa12.32□□□□□ -0.44
TRIM55-201ENST00000276573 CLUAP1Q96AJ1 413 aa12.32□□□□□ -0.44
TRIM55-201ENST00000276573 ZNF428Q96B54 188 aa12.32□□□□□ -0.44
TRIM55-201ENST00000276573 ORAI2Q96SN7 254 aa12.32□□□□□ -0.44
TRIM55-201ENST00000276573 DZIP1LQ8IYY4 767 aaKnown RBP12.31□□□□□ -0.44
TRIM55-201ENST00000276573 EYA1Q99502 592 aa12.31□□□□□ -0.44
TRIM55-201ENST00000276573 C19orf44Q9H6X5 657 aa12.31□□□□□ -0.44
TRIM55-201ENST00000276573 MARF1Q9Y4F3 1742 aaKnown RBP12.31□□□□□ -0.44
TRIM55-201ENST00000276573 DLG5Q8TDM6 1919 aa12.31□□□□□ -0.44
TRIM55-201ENST00000276573 IGSF1Q8N6C5 1336 aa12.31□□□□□ -0.44
TRIM55-201ENST00000276573 VAMP4O75379 141 aa12.3□□□□□ -0.44
TRIM55-201ENST00000276573 DCTN1Q14203 1278 aa12.3□□□□□ -0.44
TRIM55-201ENST00000276573 MBIPQ9NS73 344 aa12.3□□□□□ -0.44
TRIM55-201ENST00000276573 BRPF1P55201 1214 aaPredicted RBP12.3□□□□□ -0.44
TRIM55-201ENST00000276573 NOB1Q9ULX3 412 aaKnown RBP12.3□□□□□ -0.44
TRIM55-201ENST00000276573 KDRP35968 1356 aa12.3□□□□□ -0.44
TRIM55-201ENST00000276573 FOXO3O43524 673 aa12.29□□□□□ -0.44
TRIM55-201ENST00000276573 IGHDP01880 384 aa12.29□□□□□ -0.44
TRIM55-201ENST00000276573 IPO8O15397 1037 aaKnown RBP12.29□□□□□ -0.44
TRIM55-201ENST00000276573 MVPQ14764 893 aaKnown RBP12.29□□□□□ -0.44
TRIM55-201ENST00000276573 ATF7IPQ6VMQ6 1270 aa12.29□□□□□ -0.44
TRIM55-201ENST00000276573 TSPYL6Q8N831 410 aa12.29□□□□□ -0.44
TRIM55-201ENST00000276573 TRIM27P14373 513 aa12.28□□□□□ -0.44
TRIM55-201ENST00000276573 MTHFSDQ2M296 383 aaKnown RBP12.28□□□□□ -0.44
TRIM55-201ENST00000276573 FTSJ3Q8IY81 847 aaKnown RBP12.28□□□□□ -0.44
TRIM55-201ENST00000276573 KCNH5Q8NCM2 988 aa12.28□□□□□ -0.44
TRIM55-201ENST00000276573 IP6K1Q92551 441 aa12.28□□□□□ -0.44
TRIM55-201ENST00000276573 KIF16BQ96L93 1317 aa12.28□□□□□ -0.44
TRIM55-201ENST00000276573 CHL1O00533 1208 aa12.27□□□□□ -0.44
TRIM55-201ENST00000276573 SKAP1Q86WV1 359 aa12.27□□□□□ -0.44
TRIM55-201ENST00000276573 TWISTNBQ3B726 338 aaPredicted RBP12.27□□□□□ -0.45
TRIM55-201ENST00000276573 MCM10Q7L590 875 aa12.27□□□□□ -0.45
TRIM55-201ENST00000276573 KRT28Q7Z3Y7 464 aa12.27□□□□□ -0.45
TRIM55-201ENST00000276573 MRPL50Q8N5N7 158 aaKnown RBP12.27□□□□□ -0.45
TRIM55-201ENST00000276573 C8orf58Q8NAV2 365 aa12.27□□□□□ -0.45
TRIM55-201ENST00000276573 PCDHB15Q9Y5E8 787 aa12.27□□□□□ -0.45
TRIM55-201ENST00000276573 RTL1A6NKG5 1358 aa12.27□□□□□ -0.45
TRIM55-201ENST00000276573 C1orf167Q5SNV9 1468 aa12.27□□□□□ -0.45
TRIM55-201ENST00000276573 HSPA2P54652 639 aa12.26□□□□□ -0.45
TRIM55-201ENST00000276573 ELL2O00472 640 aaPredicted RBP12.25□□□□□ -0.45
TRIM55-201ENST00000276573 PDE4AP27815 886 aa12.25□□□□□ -0.45
TRIM55-201ENST00000276573 XPCQ01831 940 aaPredicted RBP12.25□□□□□ -0.45
TRIM55-201ENST00000276573 GAS2L2Q8NHY3 880 aa12.25□□□□□ -0.45
TRIM55-201ENST00000276573 LTV1Q96GA3 475 aaPredicted RBP12.25□□□□□ -0.45
TRIM55-201ENST00000276573 NCOA3Q9Y6Q9 1424 aa12.25□□□□□ -0.45
TRIM55-201ENST00000276573 HTATSF1O43719 755 aaKnown RBP12.25□□□□□ -0.45
TRIM55-201ENST00000276573 ATF3P18847 181 aa12.25□□□□□ -0.45
TRIM55-201ENST00000276573 ARHGAP45Q92619 1136 aa12.25□□□□□ -0.45
TRIM55-201ENST00000276573 TMEM94Q12767 1356 aa12.24□□□□□ -0.45
TRIM55-201ENST00000276573 NFAT5O94916 1531 aa12.24□□□□□ -0.45
TRIM55-201ENST00000276573 GCP02774 474 aa12.24□□□□□ -0.45
TRIM55-201ENST00000276573 TMEM57Q8N5G2 664 aa12.24□□□□□ -0.45
TRIM55-201ENST00000276573 RTF1Q92541 710 aaKnown RBP12.24□□□□□ -0.45
TRIM55-201ENST00000276573 BACH2Q9BYV9 841 aa12.24□□□□□ -0.45
TRIM55-201ENST00000276573 DDX19BQ9UMR2 479 aa12.24□□□□□ -0.45
TRIM55-201ENST00000276573 CRB1P82279 1406 aa12.24□□□□□ -0.45
TRIM55-201ENST00000276573 KDM4FA0A1W2PPD8 638 aa12.23□□□□□ -0.45
TRIM55-201ENST00000276573 ARHGEF25Q86VW2 580 aa12.23□□□□□ -0.45
TRIM55-201ENST00000276573 RWDD1Q9H446 243 aaPredicted RBP12.23□□□□□ -0.45
TRIM55-201ENST00000276573 LMOD2Q6P5Q4 547 aa12.22□□□□□ -0.45
TRIM55-201ENST00000276573 ITPRIPQ8IWB1 547 aa12.22□□□□□ -0.45
TRIM55-201ENST00000276573 STRCP1A6NGW2 1772 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms