RNA–Protein interactions for RNA: ENST00000266679.8

CPSF6-201, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 1 (best) BASIC

Gene CPSF6, Length 2,229 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-201ENST00000266679 PCDHB15Q9Y5E8 787 aa16.53■□□□□ 0.24
CPSF6-201ENST00000266679 EDC4Q6P2E9 1401 aaKnown RBP16.53■□□□□ 0.24
CPSF6-201ENST00000266679 ZKSCAN2Q63HK3 967 aa16.53■□□□□ 0.24
CPSF6-201ENST00000266679 POLKQ9UBT6 870 aa16.53■□□□□ 0.24
CPSF6-201ENST00000266679 PMFBP1Q8TBY8 1022 aa16.52■□□□□ 0.24
CPSF6-201ENST00000266679 PNNQ9H307 717 aaKnown RBP16.52■□□□□ 0.24
CPSF6-201ENST00000266679 CPSF1Q10570 1443 aaKnown RBP16.52■□□□□ 0.24
CPSF6-201ENST00000266679 AKAP12Q02952 1782 aa16.52■□□□□ 0.23
CPSF6-201ENST00000266679 CT47B1P0C2W7 299 aaPredicted RBP16.51■□□□□ 0.23
CPSF6-201ENST00000266679 RTL5Q5HYW3 569 aaPredicted RBP16.51■□□□□ 0.23
CPSF6-201ENST00000266679 NME9Q86XW9 330 aa16.51■□□□□ 0.23
CPSF6-201ENST00000266679 FTSJ3Q8IY81 847 aaKnown RBP16.51■□□□□ 0.23
CPSF6-201ENST00000266679 COL16A1Q07092 1604 aaPredicted RBP16.51■□□□□ 0.23
CPSF6-201ENST00000266679 IL16Q14005 1332 aa16.51■□□□□ 0.23
CPSF6-201ENST00000266679 AAMPQ13685 434 aa16.51■□□□□ 0.23
CPSF6-201ENST00000266679 MVPQ14764 893 aaKnown RBP16.51■□□□□ 0.23
CPSF6-201ENST00000266679 SOCS7O14512 581 aa16.5■□□□□ 0.23
CPSF6-201ENST00000266679 PRKAR2BP31323 418 aa16.5■□□□□ 0.23
CPSF6-201ENST00000266679 ZRANB1Q9UGI0 708 aa16.5■□□□□ 0.23
CPSF6-201ENST00000266679 DEKP35659 375 aaKnown RBP16.5■□□□□ 0.23
CPSF6-201ENST00000266679 DZIP1LQ8IYY4 767 aaKnown RBP16.5■□□□□ 0.23
CPSF6-201ENST00000266679 RSPH6AQ9H0K4 717 aa16.5■□□□□ 0.23
CPSF6-201ENST00000266679 NCOA3Q9Y6Q9 1424 aa16.49■□□□□ 0.23
CPSF6-201ENST00000266679 SSH1Q8WYL5 1049 aa16.49■□□□□ 0.23
CPSF6-201ENST00000266679 NUDT16Q96DE0 195 aaKnown RBP16.49■□□□□ 0.23
CPSF6-201ENST00000266679 EMILIN1Q9Y6C2 1016 aa16.49■□□□□ 0.23
CPSF6-201ENST00000266679 FCHSD2O94868 740 aa16.49■□□□□ 0.23
CPSF6-201ENST00000266679 ATF3P18847 181 aa16.49■□□□□ 0.23
CPSF6-201ENST00000266679 C19orf44Q9H6X5 657 aa16.49■□□□□ 0.23
CPSF6-201ENST00000266679 TECPR2O15040 1411 aa16.48■□□□□ 0.23
CPSF6-201ENST00000266679 HMOX1P09601 288 aa16.48■□□□□ 0.23
CPSF6-201ENST00000266679 CDK12Q9NYV4 1490 aaPredicted RBP16.47■□□□□ 0.23
CPSF6-201ENST00000266679 SLC4A3P48751 1232 aa16.47■□□□□ 0.23
CPSF6-201ENST00000266679 NEFMP07197 916 aa16.47■□□□□ 0.23
CPSF6-201ENST00000266679 TRIM27P14373 513 aa16.46■□□□□ 0.23
CPSF6-201ENST00000266679 CADPS2Q86UW7 1296 aa16.46■□□□□ 0.23
CPSF6-201ENST00000266679 RWDD1Q9H446 243 aaPredicted RBP16.46■□□□□ 0.23
CPSF6-201ENST00000266679 PDZRN3Q9UPQ7 1066 aa16.46■□□□□ 0.23
CPSF6-201ENST00000266679 NOB1Q9ULX3 412 aaKnown RBP16.46■□□□□ 0.23
CPSF6-201ENST00000266679 ITPRIPQ8IWB1 547 aa16.45■□□□□ 0.22
CPSF6-201ENST00000266679 ROBO2Q9HCK4 1378 aa16.45■□□□□ 0.22
CPSF6-201ENST00000266679 DLG5Q8TDM6 1919 aa16.45■□□□□ 0.22
CPSF6-201ENST00000266679 MST1RQ04912 1400 aa16.45■□□□□ 0.22
CPSF6-201ENST00000266679 ADGRL3Q9HAR2 1447 aa16.45■□□□□ 0.22
CPSF6-201ENST00000266679 AHDC1Q5TGY3 1603 aaPredicted RBP16.45■□□□□ 0.22
CPSF6-201ENST00000266679 DAXXQ9UER7 740 aaPredicted RBP16.45■□□□□ 0.22
CPSF6-201ENST00000266679 PRR36Q9H6K5 1346 aa16.44■□□□□ 0.22
CPSF6-201ENST00000266679 NFE2L2Q16236 605 aa16.44■□□□□ 0.22
CPSF6-201ENST00000266679 ATF7IPQ6VMQ6 1270 aa16.44■□□□□ 0.22
CPSF6-201ENST00000266679 COG3Q96JB2 828 aa16.44■□□□□ 0.22
CPSF6-201ENST00000266679 PHACTR3Q96KR7 559 aa16.44■□□□□ 0.22
CPSF6-201ENST00000266679 RGS17Q9UGC6 210 aaPredicted RBP16.44■□□□□ 0.22
CPSF6-201ENST00000266679 CCDC61Q9Y6R9 512 aa16.44■□□□□ 0.22
CPSF6-201ENST00000266679 IL13P35225 146 aa16.43■□□□□ 0.22
CPSF6-201ENST00000266679 BRINP3Q76B58 766 aa16.43■□□□□ 0.22
CPSF6-201ENST00000266679 RRS1Q15050 365 aaKnown RBP16.43■□□□□ 0.22
CPSF6-201ENST00000266679 SIRT1Q96EB6 747 aa16.43■□□□□ 0.22
CPSF6-201ENST00000266679 THUMPD2Q9BTF0 503 aaKnown RBP16.43■□□□□ 0.22
CPSF6-201ENST00000266679 DCCP43146 1447 aa16.43■□□□□ 0.22
CPSF6-201ENST00000266679 TOPAZ1Q8N9V7 1692 aa16.43■□□□□ 0.22
CPSF6-201ENST00000266679 AATKQ6ZMQ8 1374 aa16.42■□□□□ 0.22
CPSF6-201ENST00000266679 PTCH1Q13635 1447 aa16.42■□□□□ 0.22
CPSF6-201ENST00000266679 NRKQ7Z2Y5 1582 aa16.42■□□□□ 0.22
CPSF6-201ENST00000266679 NHSL1Q5SYE7 1610 aa16.42■□□□□ 0.22
CPSF6-201ENST00000266679 DDX17Q92841 729 aaKnown RBP16.42■□□□□ 0.22
CPSF6-201ENST00000266679 SEC24BO95487 1268 aa16.41■□□□□ 0.22
CPSF6-201ENST00000266679 TMEM57Q8N5G2 664 aa16.41■□□□□ 0.22
CPSF6-201ENST00000266679 LRP6O75581 1613 aa16.41■□□□□ 0.22
CPSF6-201ENST00000266679 KIF16BQ96L93 1317 aa16.41■□□□□ 0.22
CPSF6-201ENST00000266679 JCADQ9P266 1359 aa16.41■□□□□ 0.22
CPSF6-201ENST00000266679 DDX19BQ9UMR2 479 aa16.41■□□□□ 0.22
CPSF6-201ENST00000266679 USP19O94966 1318 aa16.4■□□□□ 0.22
CPSF6-201ENST00000266679 ALDH1L2Q3SY69 923 aa16.39■□□□□ 0.21
CPSF6-201ENST00000266679 NUTM2FA1L443 756 aa16.38■□□□□ 0.21
CPSF6-201ENST00000266679 IPO8O15397 1037 aaKnown RBP16.38■□□□□ 0.21
CPSF6-201ENST00000266679 CALD1Q05682 793 aaKnown RBP16.37■□□□□ 0.21
CPSF6-201ENST00000266679 ZNF692Q9BU19 519 aaPredicted RBP16.37■□□□□ 0.21
CPSF6-201ENST00000266679 POTEAQ6S8J7 498 aa16.36■□□□□ 0.21
CPSF6-201ENST00000266679 C1orf167Q5SNV9 1468 aa16.36■□□□□ 0.21
CPSF6-201ENST00000266679 GNAI1P63096 354 aa16.35■□□□□ 0.21
CPSF6-201ENST00000266679 HDAC1Q13547 482 aaPredicted RBP16.35■□□□□ 0.21
CPSF6-201ENST00000266679 IFT57Q9NWB7 429 aa16.35■□□□□ 0.21
CPSF6-201ENST00000266679 TTC21BQ7Z4L5 1316 aa16.35■□□□□ 0.21
CPSF6-201ENST00000266679 TSPYL6Q8N831 410 aa16.35■□□□□ 0.21
CPSF6-201ENST00000266679 MBIPQ9NS73 344 aa16.35■□□□□ 0.21
CPSF6-201ENST00000266679 ACEP12821 1306 aa16.34■□□□□ 0.21
CPSF6-201ENST00000266679 USP35Q9P2H5 1018 aa16.34■□□□□ 0.21
CPSF6-201ENST00000266679 PEAK1Q9H792 1746 aa16.34■□□□□ 0.21
CPSF6-201ENST00000266679 ZBTB40Q9NUA8 1239 aa16.34■□□□□ 0.21
CPSF6-201ENST00000266679 FAM83GA6ND36 823 aa16.33■□□□□ 0.2
CPSF6-201ENST00000266679 NUTM2BA6NNL0 878 aaPredicted RBP16.33■□□□□ 0.2
CPSF6-201ENST00000266679 NUTM2EB1AL46 878 aaPredicted RBP16.33■□□□□ 0.2
CPSF6-201ENST00000266679 ELL2O00472 640 aaPredicted RBP16.33■□□□□ 0.2
CPSF6-201ENST00000266679 VAMP4O75379 141 aa16.33■□□□□ 0.2
CPSF6-201ENST00000266679 LMOD3Q0VAK6 560 aa16.33■□□□□ 0.2
CPSF6-201ENST00000266679 NUTM2AQ8IVF1 878 aaPredicted RBP16.33■□□□□ 0.2
CPSF6-201ENST00000266679 MRPL50Q8N5N7 158 aaKnown RBP16.33■□□□□ 0.2
CPSF6-201ENST00000266679 ORAI2Q96SN7 254 aa16.33■□□□□ 0.2
CPSF6-201ENST00000266679 BCL11AQ9H165 835 aa16.33■□□□□ 0.2
CPSF6-201ENST00000266679 OVOS2A0A0J9YW53 1432 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms