RNA–Protein interactions for RNA: ENST00000229829.6

HLA-DOA-201, Transcript of major histocompatibility complex, class II, DO alpha, humanhuman

APPRIS P1 BASIC

Gene HLA-DOA, Length 3,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOA-201ENST00000229829 GGNBP2Q9H3C7 697 aa11.92□□□□□ -0.5
HLA-DOA-201ENST00000229829 U2SURPO15042 1029 aaKnown RBP11.92□□□□□ -0.5
HLA-DOA-201ENST00000229829 HAP1P54257 671 aaPredicted RBP11.92□□□□□ -0.5
HLA-DOA-201ENST00000229829 CCDC27Q2M243 656 aa11.92□□□□□ -0.5
HLA-DOA-201ENST00000229829 ZNF831Q5JPB2 1677 aa11.92□□□□□ -0.5
HLA-DOA-201ENST00000229829 TNRQ92752 1358 aa11.92□□□□□ -0.5
HLA-DOA-201ENST00000229829 TRIM44Q96DX7 344 aaPredicted RBP11.92□□□□□ -0.5
HLA-DOA-201ENST00000229829 EVC2Q86UK5 1308 aa11.92□□□□□ -0.5
HLA-DOA-201ENST00000229829 TULP4Q9NRJ4 1543 aa11.91□□□□□ -0.5
HLA-DOA-201ENST00000229829 GOLGA6L3A6NEY3 463 aa11.91□□□□□ -0.5
HLA-DOA-201ENST00000229829 RRP9O43818 475 aaKnown RBP11.91□□□□□ -0.5
HLA-DOA-201ENST00000229829 EXOSC9Q06265 439 aaKnown RBP11.91□□□□□ -0.5
HLA-DOA-201ENST00000229829 MVPQ14764 893 aaKnown RBP11.91□□□□□ -0.5
HLA-DOA-201ENST00000229829 RAPGEF3O95398 923 aa11.91□□□□□ -0.5
HLA-DOA-201ENST00000229829 RBM10P98175 930 aaKnown RBP11.91□□□□□ -0.5
HLA-DOA-201ENST00000229829 PLCB2Q00722 1185 aa11.91□□□□□ -0.5
HLA-DOA-201ENST00000229829 MYH16Q9H6N6 1097 aa11.91□□□□□ -0.5
HLA-DOA-201ENST00000229829 ANKRD36BQ8N2N9 1353 aa11.9□□□□□ -0.5
HLA-DOA-201ENST00000229829 FTSJ3Q8IY81 847 aaKnown RBP11.9□□□□□ -0.5
HLA-DOA-201ENST00000229829 RWDD1Q9H446 243 aaPredicted RBP11.9□□□□□ -0.5
HLA-DOA-201ENST00000229829 ZBTB7CA1YPR0 619 aa11.9□□□□□ -0.51
HLA-DOA-201ENST00000229829 ZKSCAN2Q63HK3 967 aa11.9□□□□□ -0.51
HLA-DOA-201ENST00000229829 DZIP1LQ8IYY4 767 aaKnown RBP11.9□□□□□ -0.51
HLA-DOA-201ENST00000229829 NPHP4O75161 1426 aaPredicted RBP11.89□□□□□ -0.51
HLA-DOA-201ENST00000229829 SRPK2P78362 688 aaKnown RBP11.89□□□□□ -0.51
HLA-DOA-201ENST00000229829 TBC1D32Q96NH3 1257 aa11.89□□□□□ -0.51
HLA-DOA-201ENST00000229829 TRIM35Q9UPQ4 493 aa11.89□□□□□ -0.51
HLA-DOA-201ENST00000229829 BECN1Q14457 450 aa11.89□□□□□ -0.51
HLA-DOA-201ENST00000229829 SSH1Q8WYL5 1049 aa11.89□□□□□ -0.51
HLA-DOA-201ENST00000229829 TBC1D2Q9BYX2 928 aa11.89□□□□□ -0.51
HLA-DOA-201ENST00000229829 SMC4Q9NTJ3 1288 aa11.89□□□□□ -0.51
HLA-DOA-201ENST00000229829 RPGRIP1LQ68CZ1 1315 aa11.89□□□□□ -0.51
HLA-DOA-201ENST00000229829 A0A1W2PP64 1363 aa11.89□□□□□ -0.51
HLA-DOA-201ENST00000229829 TRIM27P14373 513 aa11.88□□□□□ -0.51
HLA-DOA-201ENST00000229829 IDI1Q13907 227 aa11.88□□□□□ -0.51
HLA-DOA-201ENST00000229829 PLEKHF1Q96S99 279 aa11.88□□□□□ -0.51
HLA-DOA-201ENST00000229829 ANTXR1Q9H6X2 564 aa11.88□□□□□ -0.51
HLA-DOA-201ENST00000229829 VGFO15240 615 aaPredicted RBP11.88□□□□□ -0.51
HLA-DOA-201ENST00000229829 TMPOP42166 694 aaKnown RBP11.88□□□□□ -0.51
HLA-DOA-201ENST00000229829 PHLPP1O60346 1717 aa11.88□□□□□ -0.51
HLA-DOA-201ENST00000229829 FBLN1P23142 703 aa11.87□□□□□ -0.51
HLA-DOA-201ENST00000229829 MINK1Q8N4C8 1332 aaPredicted RBP11.87□□□□□ -0.51
HLA-DOA-201ENST00000229829 FAM135BQ49AJ0 1406 aa11.87□□□□□ -0.51
HLA-DOA-201ENST00000229829 AAMPQ13685 434 aa11.87□□□□□ -0.51
HLA-DOA-201ENST00000229829 ITPRIPQ8IWB1 547 aa11.87□□□□□ -0.51
HLA-DOA-201ENST00000229829 UPF2Q9HAU5 1272 aaKnown RBP11.87□□□□□ -0.51
HLA-DOA-201ENST00000229829 FYB1O15117 783 aa11.86□□□□□ -0.51
HLA-DOA-201ENST00000229829 NOB1Q9ULX3 412 aaKnown RBP11.86□□□□□ -0.51
HLA-DOA-201ENST00000229829 THSD7AQ9UPZ6 1657 aa11.86□□□□□ -0.51
HLA-DOA-201ENST00000229829 TMEM2Q9UHN6 1383 aa11.85□□□□□ -0.51
HLA-DOA-201ENST00000229829 XRCC6P12956 609 aaKnown RBP eCLIP11.85□□□□□ -0.51
HLA-DOA-201ENST00000229829 MFAP1P55081 439 aaKnown RBP11.85□□□□□ -0.51
HLA-DOA-201ENST00000229829 RIPK4P57078 832 aa11.85□□□□□ -0.51
HLA-DOA-201ENST00000229829 FAM13BQ9NYF5 915 aa11.85□□□□□ -0.51
HLA-DOA-201ENST00000229829 RREB1Q92766 1687 aa11.84□□□□□ -0.51
HLA-DOA-201ENST00000229829 TMEM57Q8N5G2 664 aa11.84□□□□□ -0.51
HLA-DOA-201ENST00000229829 NSD2O96028 1365 aa11.84□□□□□ -0.51
HLA-DOA-201ENST00000229829 ABCC11Q96J66 1382 aa11.84□□□□□ -0.51
HLA-DOA-201ENST00000229829 ATF7IPQ6VMQ6 1270 aa11.84□□□□□ -0.51
HLA-DOA-201ENST00000229829 SIRT1Q96EB6 747 aa11.84□□□□□ -0.51
HLA-DOA-201ENST00000229829 PUS7Q96PZ0 661 aaKnown RBP11.84□□□□□ -0.51
HLA-DOA-201ENST00000229829 PRAM1Q96QH2 718 aa11.84□□□□□ -0.51
HLA-DOA-201ENST00000229829 COL18A1P39060 1754 aa11.84□□□□□ -0.51
HLA-DOA-201ENST00000229829 PEAK1Q9H792 1746 aa11.82□□□□□ -0.52
HLA-DOA-201ENST00000229829 C22orf23Q9BZE7 217 aa11.82□□□□□ -0.52
HLA-DOA-201ENST00000229829 COL3A1P02461 1466 aaPredicted RBP11.82□□□□□ -0.52
HLA-DOA-201ENST00000229829 DDX19BQ9UMR2 479 aa11.81□□□□□ -0.52
HLA-DOA-201ENST00000229829 GLI3P10071 1580 aa11.81□□□□□ -0.52
HLA-DOA-201ENST00000229829 PRDM10Q9NQV6 1147 aa11.81□□□□□ -0.52
HLA-DOA-201ENST00000229829 HDAC1Q13547 482 aaPredicted RBP11.81□□□□□ -0.52
HLA-DOA-201ENST00000229829 DIAPH1O60610 1272 aaKnown RBP11.8□□□□□ -0.52
HLA-DOA-201ENST00000229829 CT47B1P0C2W7 299 aaPredicted RBP11.8□□□□□ -0.52
HLA-DOA-201ENST00000229829 ZBTB40Q9NUA8 1239 aa11.8□□□□□ -0.52
HLA-DOA-201ENST00000229829 CABP1Q9NZU7 370 aa11.8□□□□□ -0.52
HLA-DOA-201ENST00000229829 CD163L1Q9NR16 1453 aa11.8□□□□□ -0.52
HLA-DOA-201ENST00000229829 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.8□□□□□ -0.52
HLA-DOA-201ENST00000229829 PARP4Q9UKK3 1724 aaKnown RBP11.8□□□□□ -0.52
HLA-DOA-201ENST00000229829 TRHP20396 242 aaPredicted RBP11.8□□□□□ -0.52
HLA-DOA-201ENST00000229829 FBXO31Q5XUX0 539 aaPredicted RBP11.8□□□□□ -0.52
HLA-DOA-201ENST00000229829 SMC5Q8IY18 1101 aa11.8□□□□□ -0.52
HLA-DOA-201ENST00000229829 THUMPD2Q9BTF0 503 aaKnown RBP11.8□□□□□ -0.52
HLA-DOA-201ENST00000229829 LNPKQ9C0E8 428 aa11.8□□□□□ -0.52
HLA-DOA-201ENST00000229829 ZHX1Q9UKY1 873 aaPredicted RBP11.8□□□□□ -0.52
HLA-DOA-201ENST00000229829 ESPNB1AK53 854 aa11.79□□□□□ -0.52
HLA-DOA-201ENST00000229829 CLCN1P35523 988 aa11.79□□□□□ -0.52
HLA-DOA-201ENST00000229829 TERF2IPQ9NYB0 399 aa11.79□□□□□ -0.52
HLA-DOA-201ENST00000229829 CDK19Q9BWU1 502 aa11.79□□□□□ -0.52
HLA-DOA-201ENST00000229829 PLEKHG2Q9H7P9 1386 aa11.78□□□□□ -0.52
HLA-DOA-201ENST00000229829 HMOX1P09601 288 aa11.78□□□□□ -0.52
HLA-DOA-201ENST00000229829 PHACTR3Q96KR7 559 aa11.78□□□□□ -0.52
HLA-DOA-201ENST00000229829 ELL2O00472 640 aaPredicted RBP11.77□□□□□ -0.52
HLA-DOA-201ENST00000229829 PRKAR2BP31323 418 aa11.77□□□□□ -0.52
HLA-DOA-201ENST00000229829 KIAA1211Q6ZU35 1233 aa11.77□□□□□ -0.52
HLA-DOA-201ENST00000229829 C1orf115Q9H7X2 142 aa11.77□□□□□ -0.52
HLA-DOA-201ENST00000229829 IL16Q14005 1332 aa11.76□□□□□ -0.53
HLA-DOA-201ENST00000229829 SLC52A1Q9NWF4 448 aa11.76□□□□□ -0.53
HLA-DOA-201ENST00000229829 ATAD2Q6PL18 1390 aa11.76□□□□□ -0.53
HLA-DOA-201ENST00000229829 MCM4P33991 863 aa11.76□□□□□ -0.53
HLA-DOA-201ENST00000229829 WAPLQ7Z5K2 1190 aa11.76□□□□□ -0.53
HLA-DOA-201ENST00000229829 TSPYL6Q8N831 410 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms