RNA–Protein interactions for RNA: ENST00000225441.11

RUNDC3A-201, Transcript of RUN domain containing 3A, humanhuman

TSL 1 (best) BASIC

Gene RUNDC3A, Length 1,821 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3A-201ENST00000225441 OVOS2Q6IE36 1432 aa32.01■■■□□ 2.71
RUNDC3A-201ENST00000225441 CT47B1P0C2W7 299 aaPredicted RBP32■■■□□ 2.71
RUNDC3A-201ENST00000225441 MAPK8IP3Q9UPT6 1336 aa31.99■■■□□ 2.71
RUNDC3A-201ENST00000225441 CLUAP1Q96AJ1 413 aa31.98■■■□□ 2.71
RUNDC3A-201ENST00000225441 PIK3C2AO00443 1686 aa31.98■■■□□ 2.71
RUNDC3A-201ENST00000225441 MYH16Q9H6N6 1097 aa31.98■■■□□ 2.71
RUNDC3A-201ENST00000225441 USP31Q70CQ4 1352 aa31.97■■■□□ 2.71
RUNDC3A-201ENST00000225441 PSME1Q06323 249 aa31.97■■■□□ 2.71
RUNDC3A-201ENST00000225441 RARSP54136 660 aaKnown RBP31.96■■■□□ 2.71
RUNDC3A-201ENST00000225441 AATKQ6ZMQ8 1374 aa31.96■■■□□ 2.71
RUNDC3A-201ENST00000225441 CANXP27824 592 aaKnown RBP31.96■■■□□ 2.71
RUNDC3A-201ENST00000225441 FOXO3O43524 673 aa31.95■■■□□ 2.7
RUNDC3A-201ENST00000225441 LTBP4Q8N2S1 1624 aa31.92■■■□□ 2.7
RUNDC3A-201ENST00000225441 VIRMAQ69YN4 1812 aaKnown RBP31.92■■■□□ 2.7
RUNDC3A-201ENST00000225441 SKAP1Q86WV1 359 aa31.92■■■□□ 2.7
RUNDC3A-201ENST00000225441 USP54Q70EL1 1684 aa31.91■■■□□ 2.7
RUNDC3A-201ENST00000225441 POLKQ9UBT6 870 aa31.9■■■□□ 2.7
RUNDC3A-201ENST00000225441 FBLN1P23142 703 aa31.89■■■□□ 2.7
RUNDC3A-201ENST00000225441 DAXXQ9UER7 740 aaPredicted RBP31.89■■■□□ 2.7
RUNDC3A-201ENST00000225441 ABTB2Q8N961 1025 aa31.88■■■□□ 2.69
RUNDC3A-201ENST00000225441 MAP2P11137 1827 aaKnown RBP31.87■■■□□ 2.69
RUNDC3A-201ENST00000225441 NLRP6P59044 892 aa31.87■■■□□ 2.69
RUNDC3A-201ENST00000225441 TRPM3Q9HCF6 1732 aaPredicted RBP31.87■■■□□ 2.69
RUNDC3A-201ENST00000225441 COL3A1P02461 1466 aaPredicted RBP31.87■■■□□ 2.69
RUNDC3A-201ENST00000225441 KRT28Q7Z3Y7 464 aa31.86■■■□□ 2.69
RUNDC3A-201ENST00000225441 MARF1Q9Y4F3 1742 aaKnown RBP31.86■■■□□ 2.69
RUNDC3A-201ENST00000225441 PNPLA6Q8IY17 1366 aa31.86■■■□□ 2.69
RUNDC3A-201ENST00000225441 IGHDP01880 384 aa31.86■■■□□ 2.69
RUNDC3A-201ENST00000225441 XPCQ01831 940 aaPredicted RBP31.86■■■□□ 2.69
RUNDC3A-201ENST00000225441 SLAIN2Q9P270 581 aa31.86■■■□□ 2.69
RUNDC3A-201ENST00000225441 IL16Q14005 1332 aa31.84■■■□□ 2.69
RUNDC3A-201ENST00000225441 NEFMP07197 916 aa31.84■■■□□ 2.69
RUNDC3A-201ENST00000225441 RGS3P49796 1198 aa31.84■■■□□ 2.69
RUNDC3A-201ENST00000225441 PNNQ9H307 717 aaKnown RBP31.84■■■□□ 2.69
RUNDC3A-201ENST00000225441 COG6Q9Y2V7 657 aa31.84■■■□□ 2.69
RUNDC3A-201ENST00000225441 EMILIN1Q9Y6C2 1016 aa31.84■■■□□ 2.69
RUNDC3A-201ENST00000225441 U2AF1L5P0DN76 240 aaPredicted RBP31.83■■■□□ 2.69
RUNDC3A-201ENST00000225441 U2AF1Q01081 240 aaKnown RBP eCLIP31.83■■■□□ 2.69
RUNDC3A-201ENST00000225441 NUTM2GQ5VZR2 741 aa31.83■■■□□ 2.69
RUNDC3A-201ENST00000225441 BRINP3Q76B58 766 aa31.83■■■□□ 2.69
RUNDC3A-201ENST00000225441 PANK1Q8TE04 598 aa31.83■■■□□ 2.69
RUNDC3A-201ENST00000225441 CDK12Q9NYV4 1490 aaPredicted RBP31.83■■■□□ 2.69
RUNDC3A-201ENST00000225441 NPHP3Q7Z494 1330 aa31.83■■■□□ 2.69
RUNDC3A-201ENST00000225441 RRS1Q15050 365 aaKnown RBP31.82■■■□□ 2.68
RUNDC3A-201ENST00000225441 NEUROD2Q15784 382 aa31.82■■■□□ 2.68
RUNDC3A-201ENST00000225441 RRP7AQ9Y3A4 280 aaKnown RBP31.82■■■□□ 2.68
RUNDC3A-201ENST00000225441 LAS1LQ9Y4W2 734 aaKnown RBP31.79■■■□□ 2.68
RUNDC3A-201ENST00000225441 DDX17Q92841 729 aaKnown RBP31.78■■■□□ 2.68
RUNDC3A-201ENST00000225441 FRAT1Q92837 279 aaPredicted RBP31.77■■■□□ 2.68
RUNDC3A-201ENST00000225441 PLEKHF1Q96S99 279 aa31.77■■■□□ 2.68
RUNDC3A-201ENST00000225441 RWDD1Q9H446 243 aaPredicted RBP31.77■■■□□ 2.68
RUNDC3A-201ENST00000225441 PXDNQ92626 1479 aa31.77■■■□□ 2.68
RUNDC3A-201ENST00000225441 SBNO1A3KN83 1393 aa31.76■■■□□ 2.68
RUNDC3A-201ENST00000225441 SOX12O15370 315 aa31.76■■■□□ 2.67
RUNDC3A-201ENST00000225441 ALS2Q96Q42 1657 aa31.75■■■□□ 2.67
RUNDC3A-201ENST00000225441 DIAPH1O60610 1272 aaKnown RBP31.75■■■□□ 2.67
RUNDC3A-201ENST00000225441 ZKSCAN2Q63HK3 967 aa31.73■■■□□ 2.67
RUNDC3A-201ENST00000225441 PEAK1Q9H792 1746 aa31.72■■■□□ 2.67
RUNDC3A-201ENST00000225441 MAP3K19Q56UN5 1328 aa31.72■■■□□ 2.67
RUNDC3A-201ENST00000225441 TMPOP42166 694 aaKnown RBP31.71■■■□□ 2.67
RUNDC3A-201ENST00000225441 MVPQ14764 893 aaKnown RBP31.7■■■□□ 2.67
RUNDC3A-201ENST00000225441 LMOD2Q6P5Q4 547 aa31.7■■■□□ 2.67
RUNDC3A-201ENST00000225441 TNS3Q68CZ2 1445 aa31.7■■■□□ 2.66
RUNDC3A-201ENST00000225441 SLIT3O75094 1523 aa31.69■■■□□ 2.66
RUNDC3A-201ENST00000225441 NFAT5O94916 1531 aa31.69■■■□□ 2.66
RUNDC3A-201ENST00000225441 USP19O94966 1318 aa31.68■■■□□ 2.66
RUNDC3A-201ENST00000225441 U2SURPO15042 1029 aaKnown RBP31.68■■■□□ 2.66
RUNDC3A-201ENST00000225441 KCNH5Q8NCM2 988 aa31.68■■■□□ 2.66
RUNDC3A-201ENST00000225441 RLBP1P12271 317 aa31.67■■■□□ 2.66
RUNDC3A-201ENST00000225441 DZIP1LQ8IYY4 767 aaKnown RBP31.66■■■□□ 2.66
RUNDC3A-201ENST00000225441 PCDHB15Q9Y5E8 787 aa31.66■■■□□ 2.66
RUNDC3A-201ENST00000225441 FLT4P35916 1363 aa31.66■■■□□ 2.66
RUNDC3A-201ENST00000225441 SPATA31A3Q5VYP0 1347 aa31.66■■■□□ 2.66
RUNDC3A-201ENST00000225441 NHSL1Q5SYE7 1610 aa31.66■■■□□ 2.66
RUNDC3A-201ENST00000225441 IL13P35225 146 aa31.65■■■□□ 2.66
RUNDC3A-201ENST00000225441 KIF24Q5T7B8 1368 aa31.65■■■□□ 2.66
RUNDC3A-201ENST00000225441 SOS2Q07890 1332 aaPredicted RBP31.65■■■□□ 2.66
RUNDC3A-201ENST00000225441 TRIM35Q9UPQ4 493 aa31.64■■■□□ 2.66
RUNDC3A-201ENST00000225441 AMPHP49418 695 aa31.63■■■□□ 2.65
RUNDC3A-201ENST00000225441 ZNF428Q96B54 188 aa31.62■■■□□ 2.65
RUNDC3A-201ENST00000225441 ARHGEF10O15013 1369 aa31.61■■■□□ 2.65
RUNDC3A-201ENST00000225441 FCHSD2O94868 740 aa31.61■■■□□ 2.65
RUNDC3A-201ENST00000225441 GCP02774 474 aa31.61■■■□□ 2.65
RUNDC3A-201ENST00000225441 BECN1Q14457 450 aa31.61■■■□□ 2.65
RUNDC3A-201ENST00000225441 NFKBIBQ15653 356 aa31.61■■■□□ 2.65
RUNDC3A-201ENST00000225441 HSP90AB2PQ58FF8 381 aa31.61■■■□□ 2.65
RUNDC3A-201ENST00000225441 MED1Q15648 1581 aaPredicted RBP31.61■■■□□ 2.65
RUNDC3A-201ENST00000225441 FTSJ3Q8IY81 847 aaKnown RBP31.61■■■□□ 2.65
RUNDC3A-201ENST00000225441 RTL1A6NKG5 1358 aa31.6■■■□□ 2.65
RUNDC3A-201ENST00000225441 DDX19BQ9UMR2 479 aa31.6■■■□□ 2.65
RUNDC3A-201ENST00000225441 LTN1O94822 1766 aa31.6■■■□□ 2.65
RUNDC3A-201ENST00000225441 EIF4A2Q14240 407 aaKnown RBP31.59■■■□□ 2.65
RUNDC3A-201ENST00000225441 UPF2Q9HAU5 1272 aaKnown RBP31.59■■■□□ 2.65
RUNDC3A-201ENST00000225441 ROBO1Q9Y6N7 1651 aa31.59■■■□□ 2.65
RUNDC3A-201ENST00000225441 HDAC1Q13547 482 aaPredicted RBP31.59■■■□□ 2.65
RUNDC3A-201ENST00000225441 PDZRN3Q9UPQ7 1066 aa31.59■■■□□ 2.65
RUNDC3A-201ENST00000225441 HOXC9P31274 260 aa31.57■■■□□ 2.64
RUNDC3A-201ENST00000225441 IPO8O15397 1037 aaKnown RBP31.56■■■□□ 2.64
RUNDC3A-201ENST00000225441 PLEKHG5O94827 1062 aa31.56■■■□□ 2.64
RUNDC3A-201ENST00000225441 EXOSC9Q06265 439 aaKnown RBP31.56■■■□□ 2.64
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms