RNA–Protein interactions for RNA: ENST00000216639.7

VRK1-201, Transcript of vaccinia related kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VRK1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-201ENST00000216639 PEAK1Q9H792 1746 aa22.5■■□□□ 1.19
VRK1-201ENST00000216639 MAP3K19Q56UN5 1328 aa22.5■■□□□ 1.19
VRK1-201ENST00000216639 PAK3O75914 559 aaPredicted RBP22.49■■□□□ 1.19
VRK1-201ENST00000216639 PROSER2Q86WR7 435 aaPredicted RBP22.49■■□□□ 1.19
VRK1-201ENST00000216639 KIF24Q5T7B8 1368 aa22.49■■□□□ 1.19
VRK1-201ENST00000216639 AMPHP49418 695 aa22.48■■□□□ 1.19
VRK1-201ENST00000216639 ESCO1Q5FWF5 840 aa22.48■■□□□ 1.19
VRK1-201ENST00000216639 HSP90AB2PQ58FF8 381 aa22.48■■□□□ 1.19
VRK1-201ENST00000216639 TSR2Q969E8 191 aaKnown RBP22.47■■□□□ 1.19
VRK1-201ENST00000216639 PSME1Q06323 249 aa22.46■■□□□ 1.19
VRK1-201ENST00000216639 SULT6B1Q6IMI4 303 aa22.46■■□□□ 1.19
VRK1-201ENST00000216639 EXOSC9Q06265 439 aaKnown RBP22.45■■□□□ 1.18
VRK1-201ENST00000216639 ARHGEF10O15013 1369 aa22.45■■□□□ 1.18
VRK1-201ENST00000216639 RGPD1P0DJD0 1748 aa22.44■■□□□ 1.18
VRK1-201ENST00000216639 FRAT1Q92837 279 aaPredicted RBP22.43■■□□□ 1.18
VRK1-201ENST00000216639 GNAI1P63096 354 aa22.43■■□□□ 1.18
VRK1-201ENST00000216639 C19orf44Q9H6X5 657 aa22.43■■□□□ 1.18
VRK1-201ENST00000216639 MARF1Q9Y4F3 1742 aaKnown RBP22.42■■□□□ 1.18
VRK1-201ENST00000216639 NUTM2GQ5VZR2 741 aa22.42■■□□□ 1.18
VRK1-201ENST00000216639 IFT57Q9NWB7 429 aa22.41■■□□□ 1.18
VRK1-201ENST00000216639 MS4A1P11836 297 aa22.4■■□□□ 1.18
VRK1-201ENST00000216639 AEBP1Q8IUX7 1158 aa22.4■■□□□ 1.18
VRK1-201ENST00000216639 ZNF428Q96B54 188 aa22.4■■□□□ 1.18
VRK1-201ENST00000216639 RBM19Q9Y4C8 960 aaKnown RBP22.4■■□□□ 1.18
VRK1-201ENST00000216639 NCOA3Q9Y6Q9 1424 aa22.39■■□□□ 1.18
VRK1-201ENST00000216639 RTL1A6NKG5 1358 aa22.39■■□□□ 1.18
VRK1-201ENST00000216639 AAMPQ13685 434 aa22.39■■□□□ 1.17
VRK1-201ENST00000216639 LAS1LQ9Y4W2 734 aaKnown RBP22.39■■□□□ 1.17
VRK1-201ENST00000216639 DLG5Q8TDM6 1919 aa22.38■■□□□ 1.17
VRK1-201ENST00000216639 KCNH5Q8NCM2 988 aa22.38■■□□□ 1.17
VRK1-201ENST00000216639 BCL2L13Q9BXK5 485 aa22.38■■□□□ 1.17
VRK1-201ENST00000216639 SMC4Q9NTJ3 1288 aa22.38■■□□□ 1.17
VRK1-201ENST00000216639 KIF1AQ12756 1690 aa22.38■■□□□ 1.17
VRK1-201ENST00000216639 HOXC9P31274 260 aa22.37■■□□□ 1.17
VRK1-201ENST00000216639 ZKSCAN2Q63HK3 967 aa22.37■■□□□ 1.17
VRK1-201ENST00000216639 CENPQQ7L2Z9 268 aaPredicted RBP22.37■■□□□ 1.17
VRK1-201ENST00000216639 ORAI2Q96SN7 254 aa22.37■■□□□ 1.17
VRK1-201ENST00000216639 IGSF1Q8N6C5 1336 aa22.36■■□□□ 1.17
VRK1-201ENST00000216639 KDRP35968 1356 aa22.36■■□□□ 1.17
VRK1-201ENST00000216639 ATF3P18847 181 aa22.35■■□□□ 1.17
VRK1-201ENST00000216639 ALDH1L2Q3SY69 923 aa22.35■■□□□ 1.17
VRK1-201ENST00000216639 PANK1Q8TE04 598 aa22.35■■□□□ 1.17
VRK1-201ENST00000216639 CFAP44Q96MT7 982 aa22.35■■□□□ 1.17
VRK1-201ENST00000216639 C1orf167Q5SNV9 1468 aa22.35■■□□□ 1.17
VRK1-201ENST00000216639 DCCP43146 1447 aa22.35■■□□□ 1.17
VRK1-201ENST00000216639 ZNF853P0CG23 659 aa22.34■■□□□ 1.17
VRK1-201ENST00000216639 THUMPD2Q9BTF0 503 aaKnown RBP22.34■■□□□ 1.17
VRK1-201ENST00000216639 COG6Q9Y2V7 657 aa22.34■■□□□ 1.17
VRK1-201ENST00000216639 FOXO3O43524 673 aa22.34■■□□□ 1.17
VRK1-201ENST00000216639 TMEM94Q12767 1356 aa22.33■■□□□ 1.17
VRK1-201ENST00000216639 TCERG1O14776 1098 aaKnown RBP22.33■■□□□ 1.17
VRK1-201ENST00000216639 SSH1Q8WYL5 1049 aa22.33■■□□□ 1.17
VRK1-201ENST00000216639 EYA1Q99502 592 aa22.33■■□□□ 1.17
VRK1-201ENST00000216639 KDM2BQ8NHM5 1336 aa22.33■■□□□ 1.16
VRK1-201ENST00000216639 KIF16BQ96L93 1317 aa22.33■■□□□ 1.16
VRK1-201ENST00000216639 HSPA2P54652 639 aa22.32■■□□□ 1.16
VRK1-201ENST00000216639 IPO8O15397 1037 aaKnown RBP22.31■■□□□ 1.16
VRK1-201ENST00000216639 FTSJ3Q8IY81 847 aaKnown RBP22.31■■□□□ 1.16
VRK1-201ENST00000216639 CLUAP1Q96AJ1 413 aa22.31■■□□□ 1.16
VRK1-201ENST00000216639 MBIPQ9NS73 344 aa22.31■■□□□ 1.16
VRK1-201ENST00000216639 NFAT5O94916 1531 aa22.31■■□□□ 1.16
VRK1-201ENST00000216639 GAS2L2Q8NHY3 880 aa22.31■■□□□ 1.16
VRK1-201ENST00000216639 LTN1O94822 1766 aa22.3■■□□□ 1.16
VRK1-201ENST00000216639 FAM83GA6ND36 823 aa22.3■■□□□ 1.16
VRK1-201ENST00000216639 DZIP1LQ8IYY4 767 aaKnown RBP22.3■■□□□ 1.16
VRK1-201ENST00000216639 IP6K1Q92551 441 aa22.3■■□□□ 1.16
VRK1-201ENST00000216639 KRT28Q7Z3Y7 464 aa22.29■■□□□ 1.16
VRK1-201ENST00000216639 STRCP1A6NGW2 1772 aa22.28■■□□□ 1.16
VRK1-201ENST00000216639 CADPS2Q86UW7 1296 aa22.28■■□□□ 1.16
VRK1-201ENST00000216639 RTF1Q92541 710 aaKnown RBP22.28■■□□□ 1.16
VRK1-201ENST00000216639 MST1RQ04912 1400 aa22.27■■□□□ 1.16
VRK1-201ENST00000216639 KDM4FA0A1W2PPD8 638 aa22.27■■□□□ 1.16
VRK1-201ENST00000216639 HAP1P54257 671 aaPredicted RBP22.27■■□□□ 1.16
VRK1-201ENST00000216639 BRPF1P55201 1214 aaPredicted RBP22.27■■□□□ 1.16
VRK1-201ENST00000216639 DCTN1Q14203 1278 aa22.27■■□□□ 1.16
VRK1-201ENST00000216639 ATF7IPQ6VMQ6 1270 aa22.27■■□□□ 1.16
VRK1-201ENST00000216639 TRPM3Q9HCF6 1732 aaPredicted RBP22.27■■□□□ 1.16
VRK1-201ENST00000216639 SLIT3O75094 1523 aa22.27■■□□□ 1.15
VRK1-201ENST00000216639 PHRF1Q9P1Y6 1649 aaKnown RBP22.26■■□□□ 1.15
VRK1-201ENST00000216639 VAMP4O75379 141 aa22.26■■□□□ 1.15
VRK1-201ENST00000216639 RLBP1P12271 317 aa22.26■■□□□ 1.15
VRK1-201ENST00000216639 MVPQ14764 893 aaKnown RBP22.26■■□□□ 1.15
VRK1-201ENST00000216639 XPCQ01831 940 aaPredicted RBP22.26■■□□□ 1.15
VRK1-201ENST00000216639 MTHFSDQ2M296 383 aaKnown RBP22.26■■□□□ 1.15
VRK1-201ENST00000216639 LTV1Q96GA3 475 aaPredicted RBP22.26■■□□□ 1.15
VRK1-201ENST00000216639 NOB1Q9ULX3 412 aaKnown RBP22.26■■□□□ 1.15
VRK1-201ENST00000216639 LMTK3Q96Q04 1460 aa22.25■■□□□ 1.15
VRK1-201ENST00000216639 TRIM27P14373 513 aa22.25■■□□□ 1.15
VRK1-201ENST00000216639 LMOD2Q6P5Q4 547 aa22.25■■□□□ 1.15
VRK1-201ENST00000216639 MSH6P52701 1360 aa22.25■■□□□ 1.15
VRK1-201ENST00000216639 HTATSF1O43719 755 aaKnown RBP22.24■■□□□ 1.15
VRK1-201ENST00000216639 GCP02774 474 aa22.24■■□□□ 1.15
VRK1-201ENST00000216639 TWISTNBQ3B726 338 aaPredicted RBP22.24■■□□□ 1.15
VRK1-201ENST00000216639 MCM10Q7L590 875 aa22.24■■□□□ 1.15
VRK1-201ENST00000216639 TNNQ9UQP3 1299 aa22.23■■□□□ 1.15
VRK1-201ENST00000216639 USP19O94966 1318 aa22.23■■□□□ 1.15
VRK1-201ENST00000216639 CHL1O00533 1208 aa22.23■■□□□ 1.15
VRK1-201ENST00000216639 DDX19BQ9UMR2 479 aa22.22■■□□□ 1.15
VRK1-201ENST00000216639 ZBTB7CA1YPR0 619 aa22.21■■□□□ 1.15
VRK1-201ENST00000216639 ARHGEF25Q86VW2 580 aa22.2■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms