RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 RBM44Q6ZP01 1051 aaKnown RBP16.32■□□□□ 0.2
CLN3-246ENST00000636228 MON1BQ7L1V2 547 aa16.32■□□□□ 0.2
CLN3-246ENST00000636228 HID1Q8IV36 788 aa16.32■□□□□ 0.2
CLN3-246ENST00000636228 ZNF843Q8N446 348 aa16.32■□□□□ 0.2
CLN3-246ENST00000636228 PRR11Q96HE9 360 aaPredicted RBP16.32■□□□□ 0.2
CLN3-246ENST00000636228 CELF6Q96J87 481 aaKnown RBP16.32■□□□□ 0.2
CLN3-246ENST00000636228 SLC46A1Q96NT5 459 aa16.32■□□□□ 0.2
CLN3-246ENST00000636228 AGPAT1Q99943 283 aa16.32■□□□□ 0.2
CLN3-246ENST00000636228 NCAPGQ9BPX3 1015 aa16.32■□□□□ 0.2
CLN3-246ENST00000636228 CCDC3Q9BQI4 270 aa16.32■□□□□ 0.2
CLN3-246ENST00000636228 THSD1Q9NS62 852 aa16.32■□□□□ 0.2
CLN3-246ENST00000636228 NCKIPSDQ9NZQ3 722 aa16.32■□□□□ 0.2
CLN3-246ENST00000636228 DKK3Q9UBP4 350 aa16.32■□□□□ 0.2
CLN3-246ENST00000636228 PADI4Q9UM07 663 aa16.32■□□□□ 0.2
CLN3-246ENST00000636228 MFHAS1Q9Y4C4 1052 aa16.32■□□□□ 0.2
CLN3-246ENST00000636228 TRPM6Q9BX84 2022 aa16.31■□□□□ 0.2
CLN3-246ENST00000636228 DOCK4Q8N1I0 1966 aa16.31■□□□□ 0.2
CLN3-246ENST00000636228 BUB1BO60566 1050 aaPredicted RBP16.31■□□□□ 0.2
CLN3-246ENST00000636228 RPIAP49247 311 aa16.31■□□□□ 0.2
CLN3-246ENST00000636228 TMPRSS3P57727 454 aa16.31■□□□□ 0.2
CLN3-246ENST00000636228 YBEYP58557 167 aaPredicted RBP16.31■□□□□ 0.2
CLN3-246ENST00000636228 OGDHQ02218 1023 aa16.31■□□□□ 0.2
CLN3-246ENST00000636228 LRRC14Q15048 493 aa16.31■□□□□ 0.2
CLN3-246ENST00000636228 C6orf132Q5T0Z8 1188 aa16.31■□□□□ 0.2
CLN3-246ENST00000636228 KCTD16Q68DU8 428 aa16.31■□□□□ 0.2
CLN3-246ENST00000636228 ENPP7Q6UWV6 458 aa16.31■□□□□ 0.2
CLN3-246ENST00000636228 ZSWIM9Q86XI8 627 aa16.31■□□□□ 0.2
CLN3-246ENST00000636228 DNAAF5Q86Y56 855 aa16.31■□□□□ 0.2
CLN3-246ENST00000636228 CAMK1DQ8IU85 385 aa16.31■□□□□ 0.2
CLN3-246ENST00000636228 CASKIN2Q8WXE0 1202 aa16.31■□□□□ 0.2
CLN3-246ENST00000636228 GLMNQ92990 594 aa16.31■□□□□ 0.2
CLN3-246ENST00000636228 C1QTNF7Q9BXJ2 289 aa16.31■□□□□ 0.2
CLN3-246ENST00000636228 SUV39H2Q9H5I1 410 aa16.31■□□□□ 0.2
CLN3-246ENST00000636228 PCDH12Q9NPG4 1184 aa16.31■□□□□ 0.2
CLN3-246ENST00000636228 UBA2Q9UBT2 640 aaPredicted RBP16.31■□□□□ 0.2
CLN3-246ENST00000636228 RABGEF1Q9UJ41 708 aa16.31■□□□□ 0.2
CLN3-246ENST00000636228 DOLKQ9UPQ8 538 aa16.31■□□□□ 0.2
CLN3-246ENST00000636228 DAAM1Q9Y4D1 1078 aa16.31■□□□□ 0.2
CLN3-246ENST00000636228 OR1A2Q9Y585 309 aa16.31■□□□□ 0.2
CLN3-246ENST00000636228 GCN1Q92616 2671 aaKnown RBP16.31■□□□□ 0.2
CLN3-246ENST00000636228 WASH4PA8MWX3 477 aa16.3■□□□□ 0.2
CLN3-246ENST00000636228 LZTS3O60299 673 aaPredicted RBP16.3■□□□□ 0.2
CLN3-246ENST00000636228 PCCBP05166 539 aa16.3■□□□□ 0.2
CLN3-246ENST00000636228 C6P13671 934 aa16.3■□□□□ 0.2
CLN3-246ENST00000636228 RGRP47804 291 aa16.3■□□□□ 0.2
CLN3-246ENST00000636228 UBXN1Q04323 297 aa16.3■□□□□ 0.2
CLN3-246ENST00000636228 INPP5AQ14642 412 aa16.3■□□□□ 0.2
CLN3-246ENST00000636228 UGP2Q16851 508 aa16.3■□□□□ 0.2
CLN3-246ENST00000636228 ALG11Q2TAA5 492 aa16.3■□□□□ 0.2
CLN3-246ENST00000636228 PARP15Q460N3 678 aa16.3■□□□□ 0.2
CLN3-246ENST00000636228 TAF1BQ53T94 588 aaPredicted RBP16.3■□□□□ 0.2
CLN3-246ENST00000636228 PPP1R15BQ5SWA1 713 aa16.3■□□□□ 0.2
CLN3-246ENST00000636228 ESRP1Q6NXG1 681 aaKnown RBP16.3■□□□□ 0.2
CLN3-246ENST00000636228 UMODL1-AS1Q8N2C9 162 aa16.3■□□□□ 0.2
CLN3-246ENST00000636228 TPCN2Q8NHX9 752 aa16.3■□□□□ 0.2
CLN3-246ENST00000636228 PCDH19Q8TAB3 1148 aa16.3■□□□□ 0.2
CLN3-246ENST00000636228 CNPY3Q9BT09 278 aa16.3■□□□□ 0.2
CLN3-246ENST00000636228 APOOQ9BUR5 198 aa16.3■□□□□ 0.2
CLN3-246ENST00000636228 CPEB1Q9BZB8 566 aaKnown RBP16.3■□□□□ 0.2
CLN3-246ENST00000636228 CATSPERBQ9H7T0 1116 aa16.3■□□□□ 0.2
CLN3-246ENST00000636228 TAS2R14Q9NYV8 317 aa16.3■□□□□ 0.2
CLN3-246ENST00000636228 LIMA1Q9UHB6 759 aaKnown RBP16.3■□□□□ 0.2
CLN3-246ENST00000636228 ANKRD62A6NC57 917 aa16.29■□□□□ 0.2
CLN3-246ENST00000636228 LGALS16A8MUM7 142 aa16.29■□□□□ 0.2
CLN3-246ENST00000636228 TMCO5BA8MYB1 307 aa16.29■□□□□ 0.2
CLN3-246ENST00000636228 AGRPO00253 132 aa16.29■□□□□ 0.2
CLN3-246ENST00000636228 CTSEP14091 401 aa16.29■□□□□ 0.2
CLN3-246ENST00000636228 LIG3P49916 1009 aa16.29■□□□□ 0.2
CLN3-246ENST00000636228 HK3P52790 923 aa16.29■□□□□ 0.2
CLN3-246ENST00000636228 PDX1P52945 283 aa16.29■□□□□ 0.2
CLN3-246ENST00000636228 CFHR1Q03591 330 aa16.29■□□□□ 0.2
CLN3-246ENST00000636228 ELP6Q0PNE2 266 aa16.29■□□□□ 0.2
CLN3-246ENST00000636228 CA9Q16790 459 aa16.29■□□□□ 0.2
CLN3-246ENST00000636228 DCUN1D2Q6PH85 259 aa16.29■□□□□ 0.2
CLN3-246ENST00000636228 MCOLN2Q8IZK6 566 aa16.29■□□□□ 0.2
CLN3-246ENST00000636228 KYQ8NBH2 561 aa16.29■□□□□ 0.2
CLN3-246ENST00000636228 PLA2G15Q8NCC3 412 aa16.29■□□□□ 0.2
CLN3-246ENST00000636228 LSM14AQ8ND56 463 aaKnown RBP16.29■□□□□ 0.2
CLN3-246ENST00000636228 EDEM3Q9BZQ6 932 aa16.29■□□□□ 0.2
CLN3-246ENST00000636228 SLC39A8Q9C0K1 460 aa16.29■□□□□ 0.2
CLN3-246ENST00000636228 LRRC19Q9H756 370 aa16.29■□□□□ 0.2
CLN3-246ENST00000636228 PDFQ9HBH1 243 aa16.29■□□□□ 0.2
CLN3-246ENST00000636228 WDR70Q9NW82 654 aa16.29■□□□□ 0.2
CLN3-246ENST00000636228 RIOK3O14730 519 aaKnown RBP16.28■□□□□ 0.2
CLN3-246ENST00000636228 TCEA3O75764 348 aa16.28■□□□□ 0.2
CLN3-246ENST00000636228 TNFSF15O95150 251 aa16.28■□□□□ 0.2
CLN3-246ENST00000636228 PAPOLAP51003 745 aaKnown RBP16.28■□□□□ 0.2
CLN3-246ENST00000636228 TPI1P60174 286 aa16.28■□□□□ 0.2
CLN3-246ENST00000636228 SRP54P61011 504 aaKnown RBP16.28■□□□□ 0.2
CLN3-246ENST00000636228 CCL7P80098 99 aa16.28■□□□□ 0.2
CLN3-246ENST00000636228 SPIDRQ14159 915 aa16.28■□□□□ 0.2
CLN3-246ENST00000636228 ACAD10Q6JQN1 1059 aa16.28■□□□□ 0.2
CLN3-246ENST00000636228 B3GNT8Q7Z7M8 397 aa16.28■□□□□ 0.2
CLN3-246ENST00000636228 ZNF605Q86T29 641 aa16.28■□□□□ 0.2
CLN3-246ENST00000636228 ARL10Q8N8L6 244 aa16.28■□□□□ 0.2
CLN3-246ENST00000636228 TSEN2Q8NCE0 465 aaKnown RBP16.28■□□□□ 0.2
CLN3-246ENST00000636228 NAT6Q93015 286 aa16.28■□□□□ 0.2
CLN3-246ENST00000636228 CCDC74AQ96AQ1 378 aa16.28■□□□□ 0.2
CLN3-246ENST00000636228 TBATAQ96M53 351 aa16.28■□□□□ 0.2
CLN3-246ENST00000636228 DPH1Q9BZG8 443 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms