RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 SLCO6A1Q86UG4 719 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 FAM35AQ86V20 835 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 SYTL1Q8IYJ3 562 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 C8orf59Q8N0T1 100 aaPredicted RBP11.11□□□□□ -0.63
CLN3-244ENST00000636147 HEXDCQ8WVB3 486 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 HDAC10Q969S8 669 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 ZNF560Q96MR9 790 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 FCRL3Q96P31 734 aaPredicted RBP11.11□□□□□ -0.63
CLN3-244ENST00000636147 PPP1R10Q96QC0 940 aaKnown RBP11.11□□□□□ -0.63
CLN3-244ENST00000636147 MRPL57Q9BQC6 102 aaKnown RBP11.11□□□□□ -0.63
CLN3-244ENST00000636147 SPON2Q9BUD6 331 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 ROGDIQ9GZN7 287 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 HIPK3Q9H422 1215 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 RUBCNLQ9H714 662 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 SMPD3Q9NY59 655 aaPredicted RBP11.11□□□□□ -0.63
CLN3-244ENST00000636147 ERAP1Q9NZ08 941 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 CD274Q9NZQ7 290 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 HACD3Q9P035 362 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 PHRF1Q9P1Y6 1649 aaKnown RBP11.11□□□□□ -0.63
CLN3-244ENST00000636147 IQCA1LA6NCM1 817 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 FAM189A1O60320 539 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 RHOBTB1O94844 696 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 GNAO1P09471 354 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 ZNF12P17014 697 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 S100A5P33763 92 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 SOWAHAQ2M3V2 549 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 TRIM60Q495X7 471 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 PABPC1LQ4VXU2 614 aaKnown RBP11.11□□□□□ -0.63
CLN3-244ENST00000636147 PIGGQ5H8A4 983 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 FNDC5Q8NAU1 212 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 ITFG1Q8TB96 612 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 HM13Q8TCT9 377 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 SEPT8Q92599 483 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 EGFL8Q99944 293 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 ULBP1Q9BZM6 244 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 DPEP3Q9H4B8 488 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 EXOSC4Q9NPD3 245 aaKnown RBP11.11□□□□□ -0.63
CLN3-244ENST00000636147 GPC6Q9Y625 555 aaPredicted RBP11.11□□□□□ -0.63
CLN3-244ENST00000636147 KANSL1LA0AUZ9 987 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 C7orf72A4D263 438 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 CCDC154A6NI56 674 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 E5RI56 91 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 NRP1O14786 923 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 ZNF829Q3KNS6 432 aaPredicted RBP11.11□□□□□ -0.63
CLN3-244ENST00000636147 FBXO47Q5MNV8 452 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 ZC3H7AQ8IWR0 971 aaKnown RBP11.11□□□□□ -0.63
CLN3-244ENST00000636147 TP53INP2Q8IXH6 220 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 FIBCD1Q8N539 461 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 PNPLA1Q8N8W4 532 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 OTUD5Q96G74 571 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 XYLT2Q9H1B5 865 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 ZNF408Q9H9D4 720 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 NT5MQ9NPB1 228 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 SCN3BQ9NY72 215 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 RNF112Q9ULX5 631 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 FAM50BQ9Y247 325 aa11.11□□□□□ -0.63
CLN3-244ENST00000636147 H3BMM5 538 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 FKBP9O95302 570 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 JUNP05412 331 aaKnown RBP11.1□□□□□ -0.63
CLN3-244ENST00000636147 USP17L7P0C7H9 530 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 CCR1P32246 355 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 RPL26P61254 145 aaKnown RBP11.1□□□□□ -0.63
CLN3-244ENST00000636147 VAC14Q08AM6 782 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 ARHGAP17Q68EM7 881 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 NCBP2-AS2Q69YL0 99 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 FKBP9P1Q75LS8 142 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 FAM126BQ8IXS8 530 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 MICALL2Q8IY33 904 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 POC5Q8NA72 575 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 KBTBD7Q8WVZ9 684 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 VPS33AQ96AX1 596 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 ULK4Q96C45 1275 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 PPM1MQ96MI6 270 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 HBEGFQ99075 208 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 TKTL2Q9H0I9 626 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 RGS18Q9NS28 235 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 FAIMQ9NVQ4 179 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 OR12D3Q9UGF7 316 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 TIMM22Q9Y584 194 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 ADAMTS7Q9UKP4 1686 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 RGS5O15539 181 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 SYNCRIPO60506 623 aaKnown RBP11.1□□□□□ -0.63
CLN3-244ENST00000636147 NPM3O75607 178 aaKnown RBP11.1□□□□□ -0.63
CLN3-244ENST00000636147 FBXO21O94952 628 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 HMBSP08397 361 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 ALOX12P18054 663 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 FAM98BQ52LJ0 330 aaKnown RBP11.1□□□□□ -0.63
CLN3-244ENST00000636147 BTBD8Q5XKL5 378 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 TFAP2DQ7Z6R9 452 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 DPP9Q86TI2 863 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 IFNLR1Q8IU57 520 aaPredicted RBP11.1□□□□□ -0.63
CLN3-244ENST00000636147 WNT8BQ93098 351 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 C18orf25Q96B23 403 aaPredicted RBP11.1□□□□□ -0.63
CLN3-244ENST00000636147 EIF2AQ9BY44 585 aaKnown RBP11.1□□□□□ -0.63
CLN3-244ENST00000636147 SENP6Q9GZR1 1112 aaPredicted RBP11.1□□□□□ -0.63
CLN3-244ENST00000636147 IFT80Q9P2H3 777 aaPredicted RBP11.1□□□□□ -0.63
CLN3-244ENST00000636147 SIX4Q9UIU6 781 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 TNFSF13BQ9Y275 285 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 NFASCO94856 1347 aa11.1□□□□□ -0.63
CLN3-244ENST00000636147 HMX2A2RU54 273 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms