RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 VASPP50552 380 aaPredicted RBP14.39□□□□□ -0.11
USP39-220ENST00000613444 PTPRNQ16849 979 aa14.39□□□□□ -0.11
USP39-220ENST00000613444 NAIF1Q69YI7 327 aaPredicted RBP14.39□□□□□ -0.11
USP39-220ENST00000613444 RIBC1Q8N443 379 aaPredicted RBP14.39□□□□□ -0.11
USP39-220ENST00000613444 OR2AP1Q8NGE2 309 aa14.39□□□□□ -0.11
USP39-220ENST00000613444 OR6K2Q8NGY2 324 aa14.39□□□□□ -0.11
USP39-220ENST00000613444 WFIKKN2Q8TEU8 576 aa14.39□□□□□ -0.11
USP39-220ENST00000613444 CYB5D2Q8WUJ1 264 aa14.39□□□□□ -0.11
USP39-220ENST00000613444 GAS2L1Q99501 681 aaPredicted RBP14.39□□□□□ -0.11
USP39-220ENST00000613444 TREX1Q9NSU2 369 aa14.39□□□□□ -0.11
USP39-220ENST00000613444 IL1RAPL1Q9NZN1 696 aa14.39□□□□□ -0.11
USP39-220ENST00000613444 BCCIPQ9P287 314 aaKnown RBP eCLIP14.39□□□□□ -0.11
USP39-220ENST00000613444 EVLQ9UI08 416 aaPredicted RBP14.39□□□□□ -0.11
USP39-220ENST00000613444 NOVA2Q9UNW9 492 aaKnown RBP14.39□□□□□ -0.11
USP39-220ENST00000613444 TCF20Q9UGU0 1960 aaKnown RBP14.38□□□□□ -0.11
USP39-220ENST00000613444 MROH6A6NGR9 719 aa14.38□□□□□ -0.11
USP39-220ENST00000613444 PRRT4C9JH25 899 aa14.38□□□□□ -0.11
USP39-220ENST00000613444 TRAFD1O14545 582 aaPredicted RBP14.38□□□□□ -0.11
USP39-220ENST00000613444 PRKCGP05129 697 aa14.38□□□□□ -0.11
USP39-220ENST00000613444 GJA4P35212 333 aa14.38□□□□□ -0.11
USP39-220ENST00000613444 OPRD1P41143 372 aa14.38□□□□□ -0.11
USP39-220ENST00000613444 HTR4Q13639 388 aa14.38□□□□□ -0.11
USP39-220ENST00000613444 DLG2Q15700 870 aa14.38□□□□□ -0.11
USP39-220ENST00000613444 ZNF449Q6P9G9 518 aa14.38□□□□□ -0.11
USP39-220ENST00000613444 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.38□□□□□ -0.11
USP39-220ENST00000613444 FRS2Q8WU20 508 aa14.38□□□□□ -0.11
USP39-220ENST00000613444 NXPE3Q969Y0 559 aa14.38□□□□□ -0.11
USP39-220ENST00000613444 CERS2Q96G23 380 aa14.38□□□□□ -0.11
USP39-220ENST00000613444 TBK1Q9UHD2 729 aa14.38□□□□□ -0.11
USP39-220ENST00000613444 NUMBLQ9Y6R0 609 aa14.38□□□□□ -0.11
USP39-220ENST00000613444 COL4A2P08572 1712 aa14.38□□□□□ -0.11
USP39-220ENST00000613444 FOXO6A8MYZ6 492 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 HTRA2O43464 458 aaPredicted RBP14.37□□□□□ -0.11
USP39-220ENST00000613444 LDB2O43679 373 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 UGT1A9O60656 530 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 GSRP00390 522 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 ALADP13716 330 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 ARNTP27540 789 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 GDI1P31150 447 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 GKP32189 559 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 ESRP1Q6NXG1 681 aaKnown RBP14.37□□□□□ -0.11
USP39-220ENST00000613444 LRRC6Q86X45 466 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 SFTPA1Q8IWL2 248 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 CPA6Q8N4T0 437 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 PCDH20Q8N6Y1 951 aaKnown RBP14.37□□□□□ -0.11
USP39-220ENST00000613444 PPHLN1Q8NEY8 458 aaKnown RBP14.37□□□□□ -0.11
USP39-220ENST00000613444 MZB1Q8WU39 189 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 MRRFQ96E11 262 aaKnown RBP14.37□□□□□ -0.11
USP39-220ENST00000613444 UGT1A7Q9HAW7 530 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 UGT1A10Q9HAW8 530 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 UGT1A8Q9HAW9 530 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 SLC17A6Q9P2U8 582 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 PSMC3IPQ9P2W1 217 aaPredicted RBP14.37□□□□□ -0.11
USP39-220ENST00000613444 DEC1Q9P2X7 70 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 SLC2A6Q9UGQ3 507 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 MYO10Q9HD67 2058 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 CCDC78A2IDD5 438 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 IGSF6O95976 241 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 DLDP09622 509 aaKnown RBP14.37□□□□□ -0.11
USP39-220ENST00000613444 ERVK-10P10266 1014 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 ARCN1P48444 511 aaKnown RBP14.37□□□□□ -0.11
USP39-220ENST00000613444 MAGOHP61326 146 aaKnown RBP14.37□□□□□ -0.11
USP39-220ENST00000613444 MTSS1LQ765P7 747 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 CAMK1DQ8IU85 385 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 PLPP6Q8IY26 295 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 YAF2Q8IY57 180 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 PPM1NQ8N819 430 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 TTC8Q8TAM2 541 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 SMIM14Q96QK8 99 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 TRMT61BQ9BVS5 477 aaKnown RBP14.37□□□□□ -0.11
USP39-220ENST00000613444 ELOVL2Q9NXB9 296 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 SPO11Q9Y5K1 396 aa14.37□□□□□ -0.11
USP39-220ENST00000613444 HEATR9A2RTY3 570 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 ANKRD66B4E2M5 251 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 FAM155BO75949 473 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 PGLSO95336 258 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 PIGNO95427 931 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 SP100P23497 879 aaPredicted RBP14.36□□□□□ -0.11
USP39-220ENST00000613444 MSH2P43246 934 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 MAPK8P45983 427 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 SNRPD1P62314 119 aaKnown RBP14.36□□□□□ -0.11
USP39-220ENST00000613444 MGAT5Q09328 741 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 QPCTQ16769 361 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 MYLK3Q32MK0 819 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 GRAMD4Q6IC98 578 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 DPY19L3Q6ZPD9 716 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 MARK2Q7KZI7 788 aaKnown RBP14.36□□□□□ -0.11
USP39-220ENST00000613444 EXOC3L1Q86VI1 746 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 OR13J1Q8NGT2 312 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 OR2A12Q8NGT7 310 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 CIPCQ9C0C6 399 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 SCN8AQ9UQD0 1980 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.36□□□□□ -0.11
USP39-220ENST00000613444 TTC34A8MYJ7 566 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 POLR3GO15318 223 aaPredicted RBP14.36□□□□□ -0.11
USP39-220ENST00000613444 SOCS5O75159 536 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 PAPSS2O95340 614 aaPredicted RBP14.36□□□□□ -0.11
USP39-220ENST00000613444 ASLP04424 464 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 SRPRAP08240 638 aaKnown RBP14.36□□□□□ -0.11
USP39-220ENST00000613444 PIRTP0C851 137 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms