RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 LRIG3Q6UXM1 1119 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 GDPD4Q6W3E5 623 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 Q6ZVU0 165 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 CYS1Q717R9 158 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 GABPB2Q8TAK5 448 aaPredicted RBP15.37■□□□□ 0.05
TRIM28-209ENST00000597423 BRSK1Q8TDC3 778 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 OR8D1Q8WZ84 308 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 RANBP9Q96S59 729 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 FUT8Q9BYC5 575 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 TRABDQ9H4I3 376 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 PPCSQ9HAB8 311 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 MRM3Q9HC36 420 aaKnown RBP15.37■□□□□ 0.05
TRIM28-209ENST00000597423 LRRC4CQ9HCJ2 640 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 THEGQ9P2T0 379 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 IL36AQ9UHA7 158 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 PHTF1Q9UMS5 762 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 CHMP2BQ9UQN3 213 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 PCDHB9Q9Y5E1 797 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.37■□□□□ 0.05
TRIM28-209ENST00000597423 FAM237BA0A1B0GVD1 139 aa15.36■□□□□ 0.05
TRIM28-209ENST00000597423 HTRA2O43464 458 aaPredicted RBP15.36■□□□□ 0.05
TRIM28-209ENST00000597423 SYNCRIPO60506 623 aaKnown RBP15.36■□□□□ 0.05
TRIM28-209ENST00000597423 GJB3O75712 270 aa15.36■□□□□ 0.05
TRIM28-209ENST00000597423 IVLP07476 585 aa15.36■□□□□ 0.05
TRIM28-209ENST00000597423 PAMP19021 973 aa15.36■□□□□ 0.05
TRIM28-209ENST00000597423 STX2P32856 288 aa15.36■□□□□ 0.05
TRIM28-209ENST00000597423 GRIA4P48058 902 aa15.36■□□□□ 0.05
TRIM28-209ENST00000597423 TRAF2Q12933 501 aa15.36■□□□□ 0.05
TRIM28-209ENST00000597423 STAT4Q14765 748 aa15.36■□□□□ 0.05
TRIM28-209ENST00000597423 TMEM196Q5HYL7 178 aa15.36■□□□□ 0.05
TRIM28-209ENST00000597423 BRAT1Q6PJG6 821 aa15.36■□□□□ 0.05
TRIM28-209ENST00000597423 CAMK1DQ8IU85 385 aa15.36■□□□□ 0.05
TRIM28-209ENST00000597423 CHPFQ8IZ52 775 aa15.36■□□□□ 0.05
TRIM28-209ENST00000597423 IQCKQ8N0W5 287 aa15.36■□□□□ 0.05
TRIM28-209ENST00000597423 CNPY4Q8N129 248 aa15.36■□□□□ 0.05
TRIM28-209ENST00000597423 GOLGA6L1Q8N7Z2 621 aa15.36■□□□□ 0.05
TRIM28-209ENST00000597423 LPCAT1Q8NF37 534 aa15.36■□□□□ 0.05
TRIM28-209ENST00000597423 OR6K2Q8NGY2 324 aa15.36■□□□□ 0.05
TRIM28-209ENST00000597423 CFAP36Q96G28 342 aa15.36■□□□□ 0.05
TRIM28-209ENST00000597423 MYO19Q96H55 970 aa15.36■□□□□ 0.05
TRIM28-209ENST00000597423 TRIB3Q96RU7 358 aa15.36■□□□□ 0.05
TRIM28-209ENST00000597423 KIFC1Q9BW19 673 aa15.36■□□□□ 0.05
TRIM28-209ENST00000597423 TMEM245Q9H330 911 aa15.36■□□□□ 0.05
TRIM28-209ENST00000597423 ZDHHC6Q9H6R6 413 aa15.36■□□□□ 0.05
TRIM28-209ENST00000597423 HEBP1Q9NRV9 189 aa15.36■□□□□ 0.05
TRIM28-209ENST00000597423 SYBUQ9NX95 663 aa15.36■□□□□ 0.05
TRIM28-209ENST00000597423 SOX13Q9UN79 622 aa15.36■□□□□ 0.05
TRIM28-209ENST00000597423 GOLGA6L10A6NI86 522 aa15.35■□□□□ 0.05
TRIM28-209ENST00000597423 C2orf81A6NN90 581 aa15.35■□□□□ 0.05
TRIM28-209ENST00000597423 MAP2K7O14733 419 aa15.35■□□□□ 0.05
TRIM28-209ENST00000597423 OPA1O60313 960 aa15.35■□□□□ 0.05
TRIM28-209ENST00000597423 FZD6O60353 706 aa15.35■□□□□ 0.05
TRIM28-209ENST00000597423 RNASEH1O60930 286 aaKnown RBP15.35■□□□□ 0.05
TRIM28-209ENST00000597423 USP1O94782 785 aa15.35■□□□□ 0.05
TRIM28-209ENST00000597423 NUDT17P0C025 328 aa15.35■□□□□ 0.05
TRIM28-209ENST00000597423 ATXN1LP0C7T5 689 aaKnown RBP15.35■□□□□ 0.05
TRIM28-209ENST00000597423 CHRNA4P43681 627 aa15.35■□□□□ 0.05
TRIM28-209ENST00000597423 MRPS21P82921 87 aaKnown RBP15.35■□□□□ 0.05
TRIM28-209ENST00000597423 MTM1Q13496 603 aa15.35■□□□□ 0.05
TRIM28-209ENST00000597423 OLIG2Q13516 323 aa15.35■□□□□ 0.05
TRIM28-209ENST00000597423 FRG1Q14331 258 aaKnown RBP15.35■□□□□ 0.05
TRIM28-209ENST00000597423 ELAVL3Q14576 367 aaKnown RBP15.35■□□□□ 0.05
TRIM28-209ENST00000597423 IHHQ14623 411 aa15.35■□□□□ 0.05
TRIM28-209ENST00000597423 POU6F1Q14863 301 aa15.35■□□□□ 0.05
TRIM28-209ENST00000597423 FASTKD3Q14CZ7 662 aaKnown RBP15.35■□□□□ 0.05
TRIM28-209ENST00000597423 SKIDA1Q1XH10 827 aa15.35■□□□□ 0.05
TRIM28-209ENST00000597423 KLHL38Q2WGJ6 581 aa15.35■□□□□ 0.05
TRIM28-209ENST00000597423 HSF5Q4G112 596 aaPredicted RBP15.35■□□□□ 0.05
TRIM28-209ENST00000597423 ARSIQ5FYB1 569 aa15.35■□□□□ 0.05
TRIM28-209ENST00000597423 ZNF449Q6P9G9 518 aa15.35■□□□□ 0.05
TRIM28-209ENST00000597423 ZNF513Q8N8E2 541 aaPredicted RBP15.35■□□□□ 0.05
TRIM28-209ENST00000597423 TMIEQ8NEW7 156 aa15.35■□□□□ 0.05
TRIM28-209ENST00000597423 GSDMBQ8TAX9 411 aa15.35■□□□□ 0.05
TRIM28-209ENST00000597423 FAM3CQ92520 227 aa15.35■□□□□ 0.05
TRIM28-209ENST00000597423 SPOCK2Q92563 424 aa15.35■□□□□ 0.05
TRIM28-209ENST00000597423 PTPRN2Q92932 1015 aa15.35■□□□□ 0.05
TRIM28-209ENST00000597423 PEX13Q92968 403 aa15.35■□□□□ 0.05
TRIM28-209ENST00000597423 SHDQ96IW2 340 aa15.35■□□□□ 0.05
TRIM28-209ENST00000597423 ROPN1BQ9BZX4 212 aaPredicted RBP15.35■□□□□ 0.05
TRIM28-209ENST00000597423 ROPN1Q9HAT0 212 aaPredicted RBP15.35■□□□□ 0.05
TRIM28-209ENST00000597423 MAGEE1Q9HCI5 957 aa15.35■□□□□ 0.05
TRIM28-209ENST00000597423 FBRSL1Q9HCM7 1045 aaKnown RBP15.35■□□□□ 0.05
TRIM28-209ENST00000597423 PIH1D1Q9NWS0 290 aaKnown RBP15.35■□□□□ 0.05
TRIM28-209ENST00000597423 DUSP12Q9UNI6 340 aa15.35■□□□□ 0.05
TRIM28-209ENST00000597423 PLAAQ9Y263 795 aa15.35■□□□□ 0.05
TRIM28-209ENST00000597423 MRPS17Q9Y2R5 130 aaKnown RBP15.35■□□□□ 0.05
TRIM28-209ENST00000597423 STON1Q9Y6Q2 735 aa15.35■□□□□ 0.05
TRIM28-209ENST00000597423 RPS6KL1Q9Y6S9 549 aa15.35■□□□□ 0.05
TRIM28-209ENST00000597423 CDH23Q9H251 3354 aa15.35■□□□□ 0.05
TRIM28-209ENST00000597423 MYOFQ9NZM1 2061 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 C1QTNF3-AMACRE9PGA6 284 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 K7EQS6 105 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 TRAFD1O14545 582 aaPredicted RBP15.34■□□□□ 0.05
TRIM28-209ENST00000597423 BANF1O75531 89 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 PAPSS2O95340 614 aaPredicted RBP15.34■□□□□ 0.05
TRIM28-209ENST00000597423 PRLP01236 227 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 EPHX1P07099 455 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 XPAP23025 273 aaPredicted RBP15.34■□□□□ 0.05
TRIM28-209ENST00000597423 SUOXP51687 545 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 CRADDP78560 199 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms