RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 KDM1BQ8NB78 822 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 ADCY4Q8NFM4 1077 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 NACA2Q9H009 215 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 CRTAC1Q9NQ79 661 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 RAB26Q9ULW5 256 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 DNAJC25-GNG10A0A024R161 153 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 PIRO00625 290 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 TADA2AO75478 443 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 DAOAP59103 153 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 SCAMP5Q8TAC9 235 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 STYXQ8WUJ0 223 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 SMOQ99835 787 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 MRPS26Q9BYN8 205 aaKnown RBP15.38■□□□□ 0.05
UPF1-204ENST00000596842 WDR6Q9NNW5 1121 aaKnown RBP15.38■□□□□ 0.05
UPF1-204ENST00000596842 NDFIP2Q9NV92 336 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 SH3GLB1Q9Y371 365 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 IPPQ9Y573 584 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 TTC3P53804 2025 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 PLOD2O00469 737 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 STAU1O95793 577 aaKnown RBP15.38■□□□□ 0.05
UPF1-204ENST00000596842 CES1P23141 567 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 STX1BP61266 288 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 BEX3Q00994 111 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 REP15Q6BDI9 236 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 PKN3Q6P5Z2 889 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 CUZD1Q86UP6 607 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 ANKRD13AQ8IZ07 590 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 CNDP1Q96KN2 507 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 KLHL5Q96PQ7 755 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 HNRNPABQ99729 332 aaKnown RBP15.38■□□□□ 0.05
UPF1-204ENST00000596842 MROH8Q9H579 483 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 FBXW11Q9UKB1 542 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 ZNF487B1APH4 448 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 H2AFYO75367 372 aaKnown RBP15.37■□□□□ 0.05
UPF1-204ENST00000596842 BCAS2O75934 225 aaPredicted RBP15.37■□□□□ 0.05
UPF1-204ENST00000596842 CPB1P15086 417 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 CHRM3P20309 590 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 ZBTB6Q15916 424 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 NEPROQ6NW34 567 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 C16orf87Q6PH81 154 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 FAM35AQ86V20 835 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 ZNF410Q86VK4 478 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 NLGN2Q8NFZ4 835 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 CANT1Q8WVQ1 401 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 LRCH3Q96II8 777 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 PAAF1Q9BRP4 392 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 NDUFA13Q9P0J0 144 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 VTI1BQ9UEU0 232 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 MAGEB16A2A368 324 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 TRPC5OSA6NMA1 111 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 MYL3P08590 195 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 DARSP14868 501 aaKnown RBP15.37■□□□□ 0.05
UPF1-204ENST00000596842 STX5Q13190 355 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 TRIM25Q14258 630 aaKnown RBP15.37■□□□□ 0.05
UPF1-204ENST00000596842 UGP2Q16851 508 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 PCID2Q5JVF3 399 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 SCIMPQ6UWF3 145 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 DNAJC14Q6Y2X3 702 aaPredicted RBP15.37■□□□□ 0.05
UPF1-204ENST00000596842 TAC4Q86UU9 113 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 PIM3Q86V86 326 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 CENPOQ9BU64 300 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 CCDC28BQ9BUN5 200 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 UPF3AQ9H1J1 476 aaKnown RBP15.37■□□□□ 0.05
UPF1-204ENST00000596842 PTTG2Q9NZH5 202 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 DENRO43583 198 aaKnown RBP15.37■□□□□ 0.05
UPF1-204ENST00000596842 STRNO43815 780 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 TRMUO75648 421 aaKnown RBP15.37■□□□□ 0.05
UPF1-204ENST00000596842 MMP3P08254 477 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 SMIM10L2AP0DMW4 78 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 SMIM10L2BP0DMW5 78 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 EIF2B2P49770 351 aaKnown RBP15.37■□□□□ 0.05
UPF1-204ENST00000596842 CLVS1Q8IUQ0 354 aaPredicted RBP15.37■□□□□ 0.05
UPF1-204ENST00000596842 CASP10Q92851 521 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 C1QTNF1Q9BXJ1 281 aa15.37■□□□□ 0.05
UPF1-204ENST00000596842 NCF1BA6NI72 391 aaPredicted RBP15.36■□□□□ 0.05
UPF1-204ENST00000596842 NCF1CA8MVU1 366 aaPredicted RBP15.36■□□□□ 0.05
UPF1-204ENST00000596842 PPP6CO00743 305 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 SRP72O76094 671 aaKnown RBP15.36■□□□□ 0.05
UPF1-204ENST00000596842 NCF1P14598 390 aaPredicted RBP15.36■□□□□ 0.05
UPF1-204ENST00000596842 TSTD2Q5T7W7 516 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 GPR158Q5T848 1215 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 SPPL2CQ8IUH8 684 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 SCN4BQ8IWT1 228 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 AFAP1L2Q8N4X5 818 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 GPRC5AQ8NFJ5 357 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 ZFRQ96KR1 1074 aaKnown RBP15.36■□□□□ 0.05
UPF1-204ENST00000596842 OSBPL2Q9H1P3 480 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 NT5MQ9NPB1 228 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 TRHDEQ9UKU6 1024 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 BTRCQ9Y297 605 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 LRRC14BA6NHZ5 514 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 CRCPO75575 148 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 SIX3O95343 332 aaPredicted RBP15.36■□□□□ 0.05
UPF1-204ENST00000596842 SLC5A2P31639 672 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 CLCNKBP51801 687 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 SULT2A1Q06520 285 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 PTPRCAPQ14761 206 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 VPS26BQ4G0F5 336 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 KLC3Q6P597 504 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 ANKRD23Q86SG2 305 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms