RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 NR5A2O00482 541 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 TNPO2O14787 897 aaKnown RBP9.65□□□□□ -0.86
CCDC40-212ENST00000574799 GABBR2O75899 941 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 PTPN7P35236 360 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 HARS2P49590 506 aaKnown RBP9.65□□□□□ -0.86
CCDC40-212ENST00000574799 PDK2Q15119 407 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 PHKG1Q16816 387 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 PLD3Q8IV08 490 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 OR7A2PQ8NGA2 310 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 RAB2BQ8WUD1 216 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 SEPT1Q8WYJ6 367 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 EXT2Q93063 718 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 OMDQ99983 421 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 SDCBP2Q9H190 292 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 UNC93B1Q9H1C4 597 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 MRGBPQ9NV56 204 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 MKS1Q9NXB0 559 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 IFT80Q9P2H3 777 aaPredicted RBP9.65□□□□□ -0.86
CCDC40-212ENST00000574799 SIX4Q9UIU6 781 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 BAG5Q9UL15 447 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 EMCNQ9ULC0 261 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 SLC27A5Q9Y2P5 690 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 CPQQ9Y646 472 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 COPG1Q9Y678 874 aaKnown RBP9.65□□□□□ -0.86
CCDC40-212ENST00000574799 ATP6AP2A0A1C7CYW4 349 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 CCDC162PA2VCL2 907 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 TMEM114B3SHH9 223 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 SLCO1B7G3V0H7 640 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 CRCPO75575 148 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 ATP6AP2O75787 350 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 C2P06681 752 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 NR4A2P43354 598 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 ASPAP45381 313 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 SLC25A11Q02978 314 aaKnown RBP9.65□□□□□ -0.86
CCDC40-212ENST00000574799 FUT11Q495W5 492 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 ZNF667Q5HYK9 610 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 SH3PXD2AQ5TCZ1 1133 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 EEF1DP3Q658K8 133 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 PIWIL3Q7Z3Z3 882 aaKnown RBP9.65□□□□□ -0.86
CCDC40-212ENST00000574799 SLC22A16Q86VW1 577 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 PLD6Q8N2A8 252 aaKnown RBP9.65□□□□□ -0.86
CCDC40-212ENST00000574799 CNTD1Q8N815 330 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 OR2T34Q8NGX1 318 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 OR2T3Q8NH03 318 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 SUN5Q8TC36 379 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 BRI3BPQ8WY22 251 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 ACDQ96AP0 544 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 FAM49BQ9NUQ9 324 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 NCKIPSDQ9NZQ3 722 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 CNOT11Q9UKZ1 510 aaKnown RBP9.65□□□□□ -0.86
CCDC40-212ENST00000574799 NME7Q9Y5B8 376 aa9.65□□□□□ -0.86
CCDC40-212ENST00000574799 GLTPD2A6NH11 291 aa9.65□□□□□ -0.87
CCDC40-212ENST00000574799 NRP1O14786 923 aa9.65□□□□□ -0.87
CCDC40-212ENST00000574799 AURKAO14965 403 aa9.65□□□□□ -0.87
CCDC40-212ENST00000574799 RAD51BO15315 384 aa9.65□□□□□ -0.87
CCDC40-212ENST00000574799 DDHD2O94830 711 aa9.65□□□□□ -0.87
CCDC40-212ENST00000574799 GSNP06396 782 aa9.65□□□□□ -0.87
CCDC40-212ENST00000574799 NAT1P18440 290 aa9.65□□□□□ -0.87
CCDC40-212ENST00000574799 TGM2P21980 687 aa9.65□□□□□ -0.87
CCDC40-212ENST00000574799 ARL4AP40617 200 aa9.65□□□□□ -0.87
CCDC40-212ENST00000574799 DGCR6Q14129 220 aa9.65□□□□□ -0.87
CCDC40-212ENST00000574799 PPP2R2DQ66LE6 453 aa9.65□□□□□ -0.87
CCDC40-212ENST00000574799 CADM3Q8N126 398 aa9.65□□□□□ -0.87
CCDC40-212ENST00000574799 SPATA6LQ8N4H0 392 aa9.65□□□□□ -0.87
CCDC40-212ENST00000574799 PLD5Q8N7P1 536 aa9.65□□□□□ -0.87
CCDC40-212ENST00000574799 URGCPQ8TCY9 931 aa9.65□□□□□ -0.87
CCDC40-212ENST00000574799 CGRRF1Q99675 332 aa9.65□□□□□ -0.87
CCDC40-212ENST00000574799 SLX1AQ9BQ83 275 aa9.65□□□□□ -0.87
CCDC40-212ENST00000574799 APOL2Q9BQE5 337 aa9.65□□□□□ -0.87
CCDC40-212ENST00000574799 VTI1BQ9UEU0 232 aa9.65□□□□□ -0.87
CCDC40-212ENST00000574799 TMEM233B4DJY2 109 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 ZNF701M0R085 212 aaPredicted RBP9.64□□□□□ -0.87
CCDC40-212ENST00000574799 SNX2O60749 519 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 H2AFYO75367 372 aaKnown RBP9.64□□□□□ -0.87
CCDC40-212ENST00000574799 HOXD8P13378 290 aaPredicted RBP9.64□□□□□ -0.87
CCDC40-212ENST00000574799 HNRNPLP14866 589 aaKnown RBP eCLIP9.64□□□□□ -0.87
CCDC40-212ENST00000574799 IRF9Q00978 393 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 DUOXA2Q1HG44 320 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 INSCQ1MX18 579 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 NAPRTQ6XQN6 538 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 COLGALT1Q8NBJ5 622 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 SLC4A11Q8NBS3 891 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 TFAP2BQ92481 460 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 CERS2Q96G23 380 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 MAGED4Q96JG8 741 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 SIGLEC10Q96LC7 697 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 SLC2A11Q9BYW1 496 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 GDAP2Q9NXN4 497 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 CAB39Q9Y376 341 aaPredicted RBP9.64□□□□□ -0.87
CCDC40-212ENST00000574799 COL4A4P53420 1690 aaPredicted RBP9.64□□□□□ -0.87
CCDC40-212ENST00000574799 MGEA5O60502 916 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 SEC24AO95486 1093 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 SLC25A27O95847 323 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 LDLRP01130 860 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 PGAM1P18669 254 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 HPCAL1P37235 193 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 CDH8P55286 799 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 ARL13BQ3SXY8 428 aa9.64□□□□□ -0.87
CCDC40-212ENST00000574799 HABP4Q5JVS0 413 aaKnown RBP9.64□□□□□ -0.87
CCDC40-212ENST00000574799 ARMCX2Q7L311 632 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms