RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 SIPA1Q96FS4 1042 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 ZNF641Q96N77 438 aaPredicted RBP9.37□□□□□ -0.91
VPS35-211ENST00000569950 MCCC1Q96RQ3 725 aaPredicted RBP9.37□□□□□ -0.91
VPS35-211ENST00000569950 NAP1L3Q99457 506 aaPredicted RBP9.37□□□□□ -0.91
VPS35-211ENST00000569950 NEUROG2Q9H2A3 272 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 SUV39H2Q9H5I1 410 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 PCDH9Q9HC56 1237 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 POLMQ9NP87 494 aaPredicted RBP9.37□□□□□ -0.91
VPS35-211ENST00000569950 SCUBE2Q9NQ36 999 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 HOMER3Q9NSC5 361 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 WSB2Q9NYS7 404 aaPredicted RBP9.37□□□□□ -0.91
VPS35-211ENST00000569950 UBP1Q9NZI7 540 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 KLHL8Q9P2G9 620 aaPredicted RBP9.37□□□□□ -0.91
VPS35-211ENST00000569950 SLC8A2Q9UPR5 921 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 ITM2BQ9Y287 266 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 RAI2Q9Y5P3 530 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 SLCO1B1Q9Y6L6 691 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 GVINP1Q7Z2Y8 2422 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 RIF1Q5UIP0 2472 aaKnown RBP9.37□□□□□ -0.91
VPS35-211ENST00000569950 ZFHX2Q9C0A1 2572 aaPredicted RBP9.36□□□□□ -0.91
VPS35-211ENST00000569950 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.36□□□□□ -0.91
VPS35-211ENST00000569950 A0A1W2PP55 124 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 CCDC188H7C350 402 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 KPNA3O00505 521 aaPredicted RBP9.36□□□□□ -0.91
VPS35-211ENST00000569950 AXIN1O15169 862 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 LAMTOR5O43504 91 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 HRO43593 1189 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 PLRG1O43660 514 aaKnown RBP9.36□□□□□ -0.91
VPS35-211ENST00000569950 ADH1BP00325 375 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 PRKCGP05129 697 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 ADRB3P13945 408 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 CES1P23141 567 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 CHRNA4P43681 627 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 MAPK8P45983 427 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 NUBP1P53384 320 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 ADPRHP54922 357 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 WNT3AP56704 352 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 SEMG2Q02383 582 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 CSTF1Q05048 431 aaKnown RBP9.36□□□□□ -0.91
VPS35-211ENST00000569950 PTK6Q13882 451 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 KCNJ11Q14654 390 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 QPCTQ16769 361 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 PARP6Q2NL67 630 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 ANKRD22Q5VYY1 191 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 KIAA1324Q6UXG2 1013 aaKnown RBP9.36□□□□□ -0.91
VPS35-211ENST00000569950 USP30Q70CQ3 517 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 ERN2Q76MJ5 926 aaKnown RBP9.36□□□□□ -0.91
VPS35-211ENST00000569950 JAMLQ86YT9 394 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 KLHL7Q8IXQ5 586 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 AGGF1Q8N302 714 aaeCLIP9.36□□□□□ -0.91
VPS35-211ENST00000569950 RYBPQ8N488 228 aaPredicted RBP9.36□□□□□ -0.91
VPS35-211ENST00000569950 TAB3Q8N5C8 712 aaPredicted RBP9.36□□□□□ -0.91
VPS35-211ENST00000569950 KIF18AQ8NI77 898 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 HCAR2Q8TDS4 363 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 NSMCE1Q8WV22 266 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 ZNF592Q92610 1267 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 PRCCQ92733 491 aaPredicted RBP9.36□□□□□ -0.91
VPS35-211ENST00000569950 FUBP1Q96AE4 644 aaKnown RBP9.36□□□□□ -0.91
VPS35-211ENST00000569950 TRIM51Q9BSJ1 452 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 OSBPL1AQ9BXW6 950 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 ATP13A3Q9H7F0 1226 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 EBF2Q9HAK2 575 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 ETNK1Q9HBU6 452 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 FBXL12Q9NXK8 326 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 FZD4Q9ULV1 537 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 CHKBQ9Y259 395 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 INVSQ9Y283 1065 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 FARP1Q9Y4F1 1045 aaPredicted RBP9.36□□□□□ -0.91
VPS35-211ENST00000569950 TTLL3Q9Y4R7 772 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 PCDHB9Q9Y5E1 797 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 SPO11Q9Y5K1 396 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 FADS3Q9Y5Q0 445 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 DNAH14Q0VDD8 3507 aa9.36□□□□□ -0.91
VPS35-211ENST00000569950 LRP4O75096 1905 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 A0A0J9YYE9 177 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.35□□□□□ -0.91
VPS35-211ENST00000569950 NPIPB15A6NHN6 443 aaPredicted RBP9.35□□□□□ -0.91
VPS35-211ENST00000569950 UPK3BL1B0FP48 263 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 UPK3BL2E5RIL1 263 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 RIOK3O14730 519 aaKnown RBP9.35□□□□□ -0.91
VPS35-211ENST00000569950 TTI1O43156 1089 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 RAD51CO43502 376 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 USP12O75317 370 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 PMPCBO75439 489 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 TMEM63AO94886 807 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 SUN1O94901 812 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 AP2A1O95782 977 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 AGTP01019 485 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 IFNB1P01574 187 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 TRBC1P01850 177 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 KRT14P02533 472 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 IGHV4-34P06331 123 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 SERPINF2P08697 491 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 ALPIP09923 528 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 LHCGRP22888 699 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 SERPINA4P29622 427 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 MMP12P39900 470 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 RECQLP46063 649 aaPredicted RBP9.35□□□□□ -0.91
VPS35-211ENST00000569950 PPP2CBP62714 309 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 PPP2CAP67775 309 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms