RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 DAAM1Q9Y4D1 1078 aa11.77□□□□□ -0.53
USP3-220ENST00000561381 LRRK1Q38SD2 2015 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 PMS2P1A4D2B8 440 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 EME2A4GXA9 379 aaPredicted RBP11.76□□□□□ -0.53
USP3-220ENST00000561381 WASH4PA8MWX3 477 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 J3KR12 359 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 MUSKO15146 869 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 C1QL1O75973 258 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 TM7SF2O76062 418 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 PRKCGP05129 697 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 EIF4A3P38919 411 aaKnown RBP11.76□□□□□ -0.53
USP3-220ENST00000561381 THOP1P52888 689 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 ADKP55263 362 aaKnown RBP11.76□□□□□ -0.53
USP3-220ENST00000561381 YBEYP58557 167 aaPredicted RBP11.76□□□□□ -0.53
USP3-220ENST00000561381 IRF4Q15306 451 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 NR0B2Q15466 257 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 KIF26BQ2KJY2 2108 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 ISXQ2M1V0 245 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 INO80DQ53TQ3 878 aaPredicted RBP11.76□□□□□ -0.53
USP3-220ENST00000561381 FAXCQ5TGI0 409 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 APTXQ7Z2E3 356 aaKnown RBP11.76□□□□□ -0.53
USP3-220ENST00000561381 DNAAF5Q86Y56 855 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 SLC35F3Q8IY50 421 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 UMODL1-AS1Q8N2C9 162 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 CXorf40AQ8TE69 158 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 ATXN7L3BQ96GX2 97 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 CELF6Q96J87 481 aaKnown RBP11.76□□□□□ -0.53
USP3-220ENST00000561381 HIC2Q96JB3 615 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 ERGIC2Q96RQ1 377 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 LGMNQ99538 433 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 IL12RB2Q99665 862 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 CLPBQ9H078 707 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 POLR1BQ9H9Y6 1135 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 PDFQ9HBH1 243 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 SPASTQ9UBP0 616 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 DKK3Q9UBP4 350 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 SALL4Q9UJQ4 1053 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 MFHAS1Q9Y4C4 1052 aa11.76□□□□□ -0.53
USP3-220ENST00000561381 LRRC10BA6NIK2 292 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 TPP1O14773 563 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 ATXN7O15265 892 aaPredicted RBP11.75□□□□□ -0.53
USP3-220ENST00000561381 YY2O15391 372 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 LZTS3O60299 673 aaPredicted RBP11.75□□□□□ -0.53
USP3-220ENST00000561381 DXOO77932 396 aaKnown RBP11.75□□□□□ -0.53
USP3-220ENST00000561381 TSHRP16473 764 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 LSSP48449 732 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 PCBP4P57723 403 aaKnown RBP11.75□□□□□ -0.53
USP3-220ENST00000561381 CXADRP78310 365 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 MYL5Q02045 173 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 RAD51Q06609 339 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 PTK2BQ14289 1009 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 NCAPHQ15003 741 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 CA9Q16790 459 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 WSCD2Q2TBF2 565 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 PARP15Q460N3 678 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 C3orf38Q5JPI3 329 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 KCTD16Q68DU8 428 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 ACAD10Q6JQN1 1059 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 MACC1Q6ZN28 852 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 GPR155Q7Z3F1 870 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 ZSWIM9Q86XI8 627 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 MCOLN2Q8IZK6 566 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 ZNF248Q8NDW4 579 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 BTN2A2Q8WVV5 523 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 CASKIN2Q8WXE0 1202 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 ZNF578Q96N58 590 aaPredicted RBP11.75□□□□□ -0.53
USP3-220ENST00000561381 NCAPGQ9BPX3 1015 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 CNPY3Q9BT09 278 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 BOCQ9BWV1 1114 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 CPEB1Q9BZB8 566 aaKnown RBP11.75□□□□□ -0.53
USP3-220ENST00000561381 SLC13A1Q9BZW2 595 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 LRRC19Q9H756 370 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 CATSPERBQ9H7T0 1116 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 PCDH12Q9NPG4 1184 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 ASCL3Q9NQ33 180 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 EVA1BQ9NVM1 165 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 UBA2Q9UBT2 640 aaPredicted RBP11.75□□□□□ -0.53
USP3-220ENST00000561381 RABGEF1Q9UJ41 708 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 SATB2Q9UPW6 733 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 ENTPD2Q9Y5L3 495 aa11.75□□□□□ -0.53
USP3-220ENST00000561381 ANKRD62A6NC57 917 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 TMCO5BA8MYB1 307 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 LMO7DNF2Z398 122 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 BUB1BO60566 1050 aaPredicted RBP11.74□□□□□ -0.53
USP3-220ENST00000561381 ANXA6P08133 673 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 ATP1A3P13637 1013 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 C6P13671 934 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 CDK11BP21127 795 aaKnown RBP11.74□□□□□ -0.53
USP3-220ENST00000561381 XPAP23025 273 aaPredicted RBP11.74□□□□□ -0.53
USP3-220ENST00000561381 RGRP47804 291 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 TPI1P60174 286 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 YPEL5P62699 121 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 PPARDQ03181 441 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 UGP2Q16851 508 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 TMEM52BQ4KMG9 183 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 C6orf132Q5T0Z8 1188 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 DCUN1D2Q6PH85 259 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 SASS6Q6UVJ0 657 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 PCSK4Q6UW60 755 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 IRF2BP2Q7Z5L9 587 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms