RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 CYP4V2Q6ZWL3 525 aaPredicted RBP10.32□□□□□ -0.76
LDLR-214ENST00000560628 SRLQ86TD4 932 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 ZSWIM9Q86XI8 627 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 ARHGAP12Q8IWW6 846 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 PHACTR4Q8IZ21 702 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 NPWQ8N729 165 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 PAF1Q8N7H5 531 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 DCBLD1Q8N8Z6 715 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 FAM181AQ8N9Y4 354 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 TP53I13Q8NBR0 393 aaPredicted RBP10.32□□□□□ -0.76
LDLR-214ENST00000560628 DENND6BQ8NEG7 585 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 IFI44Q8TCB0 444 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 CPLX3Q8WVH0 158 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 CRELD1Q96HD1 420 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 FUCA2Q9BTY2 467 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.32□□□□□ -0.76
LDLR-214ENST00000560628 DUSP23Q9BVJ7 150 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 C1QTNF7Q9BXJ2 289 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 ABCG4Q9H172 646 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 CWC15Q9P013 229 aaKnown RBP10.32□□□□□ -0.76
LDLR-214ENST00000560628 SPASTQ9UBP0 616 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 PCDHB1Q9Y5F3 818 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 CSNK1G3Q9Y6M4 447 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 FAM208BQ5VWN6 2430 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 CACNA1GO43497 2377 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 ADAMTS20P59510 1910 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 A0A087WV48 116 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 SYCE3A1L190 88 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 TTC24A2A3L6 582 aaPredicted RBP10.31□□□□□ -0.76
LDLR-214ENST00000560628 A8MX80 341 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 RIOK3O14730 519 aaKnown RBP10.31□□□□□ -0.76
LDLR-214ENST00000560628 LZTS3O60299 673 aaPredicted RBP10.31□□□□□ -0.76
LDLR-214ENST00000560628 BRINP1O60477 761 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 LRCH4O75427 683 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 C6P13671 934 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 TCF4P15884 667 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 AMPD1P23109 780 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 IL1R2P27930 398 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 EIF2S3P41091 472 aaKnown RBP10.31□□□□□ -0.76
LDLR-214ENST00000560628 LIG3P49916 1009 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 YPEL5P62699 121 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 FANCCQ00597 558 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 PPARDQ03181 441 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 ELP6Q0PNE2 266 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 INPP5AQ14642 412 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 LRRC14Q15048 493 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 IRF4Q15306 451 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 SMTNL2Q2TAL5 461 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 AFMIDQ63HM1 303 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 ZCCHC8Q6NZY4 707 aaKnown RBP10.31□□□□□ -0.76
LDLR-214ENST00000560628 ERAP2Q6P179 960 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 GUSBP11Q6P575 273 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 CRTC1Q6UUV9 634 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 NYAP1Q6ZVC0 841 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 EFL1Q7Z2Z2 1120 aaKnown RBP10.31□□□□□ -0.76
LDLR-214ENST00000560628 RD3Q7Z3Z2 195 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 LUZP1Q86V48 1076 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 CACTIN-AS1Q8N1I8 211 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 MAPK15Q8TD08 544 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 HCAR2Q8TDS4 363 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 FNIP1Q8TF40 1166 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 BTN2A2Q8WVV5 523 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 HSPH1Q92598 858 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 TSACCQ96A04 125 aaPredicted RBP10.31□□□□□ -0.76
LDLR-214ENST00000560628 BTBD6Q96KE9 485 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 NSMCE3Q96MG7 304 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 ZNF641Q96N77 438 aaPredicted RBP10.31□□□□□ -0.76
LDLR-214ENST00000560628 IL12RB2Q99665 862 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 CINPQ9BW66 212 aaPredicted RBP10.31□□□□□ -0.76
LDLR-214ENST00000560628 EDEM3Q9BZQ6 932 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 SLC13A1Q9BZW2 595 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 ISCUQ9H1K1 167 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 ZWILCHQ9H900 591 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 SP110Q9HB58 689 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 CBX8Q9HC52 389 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 SCUBE2Q9NQ36 999 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 APOBEC3BQ9UH17 382 aaKnown RBP10.31□□□□□ -0.76
LDLR-214ENST00000560628 ASXL3Q9C0F0 2248 aa10.31□□□□□ -0.76
LDLR-214ENST00000560628 FREM2Q5SZK8 3169 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 TSPAN11A1L157 253 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 EIF3CLB5ME19 914 aaKnown RBP10.3□□□□□ -0.76
LDLR-214ENST00000560628 H3BRJ5 948 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 MUSKO15146 869 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 CASC3O15234 703 aaKnown RBP10.3□□□□□ -0.76
LDLR-214ENST00000560628 YY2O15391 372 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 CSO75390 466 aaKnown RBP10.3□□□□□ -0.76
LDLR-214ENST00000560628 MPOP05164 745 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 PCCBP05166 539 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 ANXA6P08133 673 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 CELA2BP08218 269 aaPredicted RBP10.3□□□□□ -0.76
LDLR-214ENST00000560628 TSHRP16473 764 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 TGM2P21980 687 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 CSNK1DP48730 415 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 HCAR3P49019 387 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 SCNN1BP51168 640 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 SUOXP51687 545 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 UBASH3AP57075 661 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 BCL2L1Q07817 233 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 IL10RBQ08334 325 aa10.3□□□□□ -0.76
LDLR-214ENST00000560628 DPYSQ14117 519 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms