RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, human

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13C-208	ENST00000559119	OR13A1	Q8NGR1	328 aa		4.58	□□□□□ -1.68
VPS13C-208	ENST00000559119	CREB3L4	Q8TEY5	395 aa		4.58	□□□□□ -1.68
VPS13C-208	ENST00000559119	TANK	Q92844	425 aa		4.58	□□□□□ -1.68
VPS13C-208	ENST00000559119	TRMT61B	Q9BVS5	477 aa	Known RBP	4.58	□□□□□ -1.68
VPS13C-208	ENST00000559119	WDR12	Q9GZL7	423 aa	Known RBP	4.58	□□□□□ -1.68
VPS13C-208	ENST00000559119	ZNF334	Q9HCZ1	680 aa	Predicted RBP	4.58	□□□□□ -1.68
VPS13C-208	ENST00000559119	TYW5	A2RUC4	315 aa	Known RBP	4.57	□□□□□ -1.68
VPS13C-208	ENST00000559119	C16orf97	H3BN30	126 aa		4.57	□□□□□ -1.68
VPS13C-208	ENST00000559119	EDIL3	O43854	480 aa		4.57	□□□□□ -1.68
VPS13C-208	ENST00000559119	CDKN1A	P38936	164 aa		4.57	□□□□□ -1.68
VPS13C-208	ENST00000559119	ZNF155	Q12901	538 aa	Predicted RBP	4.57	□□□□□ -1.68
VPS13C-208	ENST00000559119	ZNF484	Q5JVG2	852 aa		4.57	□□□□□ -1.68
VPS13C-208	ENST00000559119	SH2D4B	Q5SQS7	431 aa		4.57	□□□□□ -1.68
VPS13C-208	ENST00000559119	PLA2G4F	Q68DD2	849 aa		4.57	□□□□□ -1.68
VPS13C-208	ENST00000559119	FAM122C	Q6P4D5	195 aa		4.57	□□□□□ -1.68
VPS13C-208	ENST00000559119	LURAP1L	Q8IV03	231 aa		4.57	□□□□□ -1.68
VPS13C-208	ENST00000559119	RBM17	Q96I25	401 aa	Known RBP	4.57	□□□□□ -1.68
VPS13C-208	ENST00000559119	C1QTNF5	Q9BXJ0	243 aa		4.57	□□□□□ -1.68
VPS13C-208	ENST00000559119	LRRC4	Q9HBW1	653 aa		4.57	□□□□□ -1.68
VPS13C-208	ENST00000559119	NOX4	Q9NPH5	578 aa		4.57	□□□□□ -1.68
VPS13C-208	ENST00000559119	G6PC2	Q9NQR9	355 aa		4.57	□□□□□ -1.68
VPS13C-208	ENST00000559119	ZFP57	Q9NU63	452 aa		4.57	□□□□□ -1.68
VPS13C-208	ENST00000559119	HDAC6	Q9UBN7	1215 aa		4.57	□□□□□ -1.68
VPS13C-208	ENST00000559119	ATXN2	Q99700	1313 aa	Known RBP	4.56	□□□□□ -1.68
VPS13C-208	ENST00000559119	ZIC3	O60481	467 aa		4.56	□□□□□ -1.68
VPS13C-208	ENST00000559119	ATP2C2	O75185	946 aa		4.56	□□□□□ -1.68
VPS13C-208	ENST00000559119	RGS11	O94810	467 aa		4.56	□□□□□ -1.68
VPS13C-208	ENST00000559119	IFIT2	P09913	472 aa	Known RBP	4.56	□□□□□ -1.68
VPS13C-208	ENST00000559119	CD72	P21854	359 aa		4.56	□□□□□ -1.68
VPS13C-208	ENST00000559119	PIGA	P37287	484 aa		4.56	□□□□□ -1.68
VPS13C-208	ENST00000559119	IL15	P40933	162 aa	Predicted RBP	4.56	□□□□□ -1.68
VPS13C-208	ENST00000559119	OASL	Q15646	514 aa	Known RBP	4.56	□□□□□ -1.68
VPS13C-208	ENST00000559119	AMZ1	Q400G9	498 aa		4.56	□□□□□ -1.68
VPS13C-208	ENST00000559119	FBXO43	Q4G163	708 aa		4.56	□□□□□ -1.68
VPS13C-208	ENST00000559119	ATP13A5	Q4VNC0	1218 aa		4.56	□□□□□ -1.68
VPS13C-208	ENST00000559119	CES5A	Q6NT32	575 aa		4.56	□□□□□ -1.68
VPS13C-208	ENST00000559119	C19orf48	Q6RUI8	117 aa		4.56	□□□□□ -1.68
VPS13C-208	ENST00000559119	CHD1L	Q86WJ1	897 aa		4.56	□□□□□ -1.68
VPS13C-208	ENST00000559119	LINS1	Q8NG48	757 aa		4.56	□□□□□ -1.68
VPS13C-208	ENST00000559119	LNX1	Q8TBB1	728 aa	Predicted RBP	4.56	□□□□□ -1.68
VPS13C-208	ENST00000559119	CSGALNACT1	Q8TDX6	532 aa		4.56	□□□□□ -1.68
VPS13C-208	ENST00000559119	HSPH1	Q92598	858 aa		4.56	□□□□□ -1.68
VPS13C-208	ENST00000559119	TAF15	Q92804	592 aa	Known RBP eCLIP	4.56	□□□□□ -1.68
VPS13C-208	ENST00000559119	TMEM19	Q96HH6	336 aa		4.56	□□□□□ -1.68
VPS13C-208	ENST00000559119	PCGF6	Q9BYE7	350 aa		4.56	□□□□□ -1.68
VPS13C-208	ENST00000559119	TTC12	Q9H892	705 aa	Predicted RBP	4.56	□□□□□ -1.68
VPS13C-208	ENST00000559119	PTPRH	Q9HD43	1115 aa		4.56	□□□□□ -1.68
VPS13C-208	ENST00000559119	TLR8	Q9NR97	1041 aa	Known RBP	4.56	□□□□□ -1.68
VPS13C-208	ENST00000559119	CYSLTR2	Q9NS75	346 aa		4.56	□□□□□ -1.68
VPS13C-208	ENST00000559119	NDRG3	Q9UGV2	375 aa		4.56	□□□□□ -1.68
VPS13C-208	ENST00000559119	ZNF711	Q9Y462	761 aa		4.56	□□□□□ -1.68
VPS13C-208	ENST00000559119	CGNL1	Q0VF96	1302 aa		4.55	□□□□□ -1.68
VPS13C-208	ENST00000559119	WNT9B	O14905	357 aa		4.55	□□□□□ -1.68
VPS13C-208	ENST00000559119	FUT6	P51993	359 aa		4.55	□□□□□ -1.68
VPS13C-208	ENST00000559119	TANGO2	Q6ICL3	276 aa		4.55	□□□□□ -1.68
VPS13C-208	ENST00000559119	TMEM170A	Q8WVE7	144 aa		4.55	□□□□□ -1.68
VPS13C-208	ENST00000559119	MASTL	Q96GX5	879 aa		4.55	□□□□□ -1.68
VPS13C-208	ENST00000559119	EGLN1	Q9GZT9	426 aa		4.55	□□□□□ -1.68
VPS13C-208	ENST00000559119	KCNS2	Q9ULS6	477 aa		4.55	□□□□□ -1.68
VPS13C-208	ENST00000559119	SNED1	Q8TER0	1413 aa		4.55	□□□□□ -1.68
VPS13C-208	ENST00000559119	PRC1	O43663	620 aa		4.54	□□□□□ -1.68
VPS13C-208	ENST00000559119	SETSIP	P0DME0	302 aa		4.54	□□□□□ -1.68
VPS13C-208	ENST00000559119	SRC	P12931	536 aa		4.54	□□□□□ -1.68
VPS13C-208	ENST00000559119	HNF1B	P35680	557 aa		4.54	□□□□□ -1.68
VPS13C-208	ENST00000559119	ARHGEF6	Q15052	776 aa		4.54	□□□□□ -1.68
VPS13C-208	ENST00000559119	IRAK1BP1	Q5VVH5	260 aa		4.54	□□□□□ -1.68
VPS13C-208	ENST00000559119	IL20RB	Q6UXL0	311 aa		4.54	□□□□□ -1.68
VPS13C-208	ENST00000559119	EPHX4	Q8IUS5	362 aa		4.54	□□□□□ -1.68
VPS13C-208	ENST00000559119	GDPD5	Q8WTR4	605 aa		4.54	□□□□□ -1.68
VPS13C-208	ENST00000559119	RNFT2	Q96EX2	444 aa		4.54	□□□□□ -1.68
VPS13C-208	ENST00000559119	TTC14	Q96N46	770 aa		4.54	□□□□□ -1.68
VPS13C-208	ENST00000559119	FBRSL1	Q9HCM7	1045 aa	Known RBP	4.54	□□□□□ -1.68
VPS13C-208	ENST00000559119	CD207	Q9UJ71	328 aa		4.54	□□□□□ -1.68
VPS13C-208	ENST00000559119	CDC14A	Q9UNH5	594 aa		4.54	□□□□□ -1.68
VPS13C-208	ENST00000559119	ZNF587B	E7ETH6	402 aa		4.53	□□□□□ -1.68
VPS13C-208	ENST00000559119	EBAG9	O00559	213 aa		4.53	□□□□□ -1.68
VPS13C-208	ENST00000559119	MID1	O15344	667 aa		4.53	□□□□□ -1.68
VPS13C-208	ENST00000559119	MTA2	O94776	668 aa		4.53	□□□□□ -1.68
VPS13C-208	ENST00000559119	TBX6	O95947	436 aa	Predicted RBP	4.53	□□□□□ -1.68
VPS13C-208	ENST00000559119	AMBP	P02760	352 aa		4.53	□□□□□ -1.68
VPS13C-208	ENST00000559119	CSTB	P04080	98 aa	Known RBP	4.53	□□□□□ -1.68
VPS13C-208	ENST00000559119	RNF224	P0DH78	156 aa		4.53	□□□□□ -1.68
VPS13C-208	ENST00000559119	MARK3	P27448	753 aa		4.53	□□□□□ -1.68
VPS13C-208	ENST00000559119	CST5	P28325	142 aa	Predicted RBP	4.53	□□□□□ -1.68
VPS13C-208	ENST00000559119	STX2	P32856	288 aa		4.53	□□□□□ -1.68
VPS13C-208	ENST00000559119	PRKAA2	P54646	552 aa		4.53	□□□□□ -1.68
VPS13C-208	ENST00000559119	RUNX2	Q13950	521 aa		4.53	□□□□□ -1.68
VPS13C-208	ENST00000559119	SLC18A3	Q16572	532 aa		4.53	□□□□□ -1.68
VPS13C-208	ENST00000559119	C14orf177	Q52M58	125 aa		4.53	□□□□□ -1.68
VPS13C-208	ENST00000559119	HSP90AB2P	Q58FF8	381 aa		4.53	□□□□□ -1.68
VPS13C-208	ENST00000559119	NAPEPLD	Q6IQ20	393 aa		4.53	□□□□□ -1.68
VPS13C-208	ENST00000559119	CCNI2	Q6ZMN8	369 aa	Predicted RBP	4.53	□□□□□ -1.68
VPS13C-208	ENST00000559119	SLC9B2	Q86UD5	537 aa		4.53	□□□□□ -1.68
VPS13C-208	ENST00000559119	SATL1	Q86VE3	508 aa		4.53	□□□□□ -1.68
VPS13C-208	ENST00000559119	CIART	Q8N365	385 aa	Predicted RBP	4.53	□□□□□ -1.68
VPS13C-208	ENST00000559119	ZNF485	Q8NCK3	441 aa		4.53	□□□□□ -1.68
VPS13C-208	ENST00000559119	DBF4B	Q8NFT6	615 aa		4.53	□□□□□ -1.68
VPS13C-208	ENST00000559119	DMBX1	Q8NFW5	382 aa		4.53	□□□□□ -1.68
VPS13C-208	ENST00000559119	RUBCN	Q92622	972 aa		4.53	□□□□□ -1.68
VPS13C-208	ENST00000559119	CRB3	Q9BUF7	120 aa		4.53	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 146.2 ms