RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 SLCO4A1Q96BD0 722 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 UNC93B1Q9H1C4 597 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 CYP3A43Q9HB55 503 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 INIPQ9NRY2 104 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 MAP3K20Q9NYL2 800 aaKnown RBP11.42□□□□□ -0.58
LDLR-208ENST00000558518 PKD2L2Q9NZM6 624 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 CPA4Q9UI42 421 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 PCDHGA4Q9Y5G9 962 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 OR51F1A6NGY5 319 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 ERI2A8K979 691 aaKnown RBP11.41□□□□□ -0.58
LDLR-208ENST00000558518 FUCA1P04066 466 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 USP17L7P0C7H9 530 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 ALOX15P16050 662 aaPredicted RBP11.41□□□□□ -0.58
LDLR-208ENST00000558518 MAGEA8P43361 318 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 RELAQ04206 551 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 DGCR6Q14129 220 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 METTL7BQ6UX53 244 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 DNAJC14Q6Y2X3 702 aaPredicted RBP11.41□□□□□ -0.58
LDLR-208ENST00000558518 STK32CQ86UX6 486 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 CENPLQ8N0S6 344 aaPredicted RBP11.41□□□□□ -0.58
LDLR-208ENST00000558518 BBS5Q8N3I7 341 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 KDM1BQ8NB78 822 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 ZC3H15Q8WU90 426 aaKnown RBP11.41□□□□□ -0.58
LDLR-208ENST00000558518 SLC35F5Q8WV83 523 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 LZICQ8WZA0 190 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 PDZD7Q9H5P4 517 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 VPS51Q9UID3 782 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 TIMM22Q9Y584 194 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 COL24A1Q17RW2 1714 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 GREB1LQ9C091 1923 aaPredicted RBP11.41□□□□□ -0.58
LDLR-208ENST00000558518 A0A0J9YYE9 177 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 H3BMQ9 156 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 GNGT2O14610 69 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 HALP42357 657 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 CLCN2P51788 898 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 BMXP51813 675 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 TKTL1P51854 596 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 RAB10P61026 200 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 YWHAHQ04917 246 aaPredicted RBP11.41□□□□□ -0.58
LDLR-208ENST00000558518 MERTKQ12866 999 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 INPP5AQ14642 412 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 TGFBIQ15582 683 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 TARBP2Q15633 366 aaKnown RBP11.41□□□□□ -0.58
LDLR-208ENST00000558518 SAMD4BQ5PRF9 694 aaKnown RBP11.41□□□□□ -0.58
LDLR-208ENST00000558518 STEAP4Q687X5 459 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 ELMSAN1Q6PJG2 1045 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 C4orf22Q6V702 233 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 FAM83AQ86UY5 434 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 GPR180Q86V85 440 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 NPWQ8N729 165 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 ELMO1Q92556 727 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 COG8Q96MW5 612 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 ZMAT2Q96NC0 199 aaKnown RBP11.41□□□□□ -0.58
LDLR-208ENST00000558518 MID1IP1Q9NPA3 183 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 GID8Q9NWU2 228 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 HOXC10Q9NYD6 342 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 CORINQ9Y5Q5 1042 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 NUP214P35658 2090 aaPredicted RBP11.41□□□□□ -0.58
LDLR-208ENST00000558518 FUOMA2VDF0 154 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 GFAPP14136 432 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 IL7RP16871 459 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 NFKBIAP25963 317 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 FPGSQ05932 587 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 BST2Q10589 180 aaKnown RBP11.41□□□□□ -0.58
LDLR-208ENST00000558518 NFYCQ13952 458 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 POLD3Q15054 466 aaPredicted RBP11.41□□□□□ -0.58
LDLR-208ENST00000558518 PIM3Q86V86 326 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 OR2T34Q8NGX1 318 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 OR2T3Q8NH03 318 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 HDAC10Q969S8 669 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 MAML3Q96JK9 1138 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 MLPHQ9BV36 600 aaPredicted RBP11.41□□□□□ -0.58
LDLR-208ENST00000558518 PRMT7Q9NVM4 692 aaPredicted RBP11.41□□□□□ -0.58
LDLR-208ENST00000558518 ZNF229Q9UJW7 825 aa11.41□□□□□ -0.58
LDLR-208ENST00000558518 PTPRFP10586 1907 aa11.4□□□□□ -0.58
LDLR-208ENST00000558518 SOWAHBA6NEL2 793 aa11.4□□□□□ -0.58
LDLR-208ENST00000558518 XYLBO75191 536 aa11.4□□□□□ -0.58
LDLR-208ENST00000558518 ALBP02768 609 aa11.4□□□□□ -0.58
LDLR-208ENST00000558518 FAM163BP0C2L3 166 aa11.4□□□□□ -0.58
LDLR-208ENST00000558518 YBX3P16989 372 aaKnown RBP eCLIP11.4□□□□□ -0.583e-8■□□□□ 9.8
LDLR-208ENST00000558518 GABRB3P28472 473 aa11.4□□□□□ -0.58
LDLR-208ENST00000558518 SLC1A2P43004 574 aa11.4□□□□□ -0.58
LDLR-208ENST00000558518 SULT2A1Q06520 285 aa11.4□□□□□ -0.58
LDLR-208ENST00000558518 NANOGP8Q6NSW7 305 aa11.4□□□□□ -0.58
LDLR-208ENST00000558518 CAMK1DQ8IU85 385 aa11.4□□□□□ -0.58
LDLR-208ENST00000558518 OR10Q1Q8NGQ4 319 aa11.4□□□□□ -0.58
LDLR-208ENST00000558518 SPPL2BQ8TCT7 592 aa11.4□□□□□ -0.58
LDLR-208ENST00000558518 NUDT8Q8WV74 236 aa11.4□□□□□ -0.58
LDLR-208ENST00000558518 GFM2Q969S9 779 aaKnown RBP11.4□□□□□ -0.58
LDLR-208ENST00000558518 FAM167AQ96KS9 214 aa11.4□□□□□ -0.58
LDLR-208ENST00000558518 WDR70Q9NW82 654 aa11.4□□□□□ -0.58
LDLR-208ENST00000558518 PLK2Q9NYY3 685 aa11.4□□□□□ -0.58
LDLR-208ENST00000558518 VTI1BQ9UEU0 232 aa11.4□□□□□ -0.58
LDLR-208ENST00000558518 TNFSF13BQ9Y275 285 aa11.4□□□□□ -0.58
LDLR-208ENST00000558518 NME7Q9Y5B8 376 aa11.4□□□□□ -0.58
LDLR-208ENST00000558518 U3KQV3 271 aa11.4□□□□□ -0.58
LDLR-208ENST00000558518 KDM4FA0A1W2PPD8 638 aa11.4□□□□□ -0.58
LDLR-208ENST00000558518 UBA6A0AVT1 1052 aaPredicted RBP11.4□□□□□ -0.58
LDLR-208ENST00000558518 AP2A1O95782 977 aa11.4□□□□□ -0.58
LDLR-208ENST00000558518 SBK3P0C264 359 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms