RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 PIM1P11309 404 aaPredicted RBP12.43□□□□□ -0.42
LDLR-205ENST00000557933 CYP2B6P20813 491 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 FOXA1P55317 472 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 PIGFQ07326 219 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 TBCELQ5QJ74 424 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 C6orf10Q5SRN2 563 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 C9orf57Q5W0N0 161 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 KLHL23Q8NBE8 558 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 SPPL2BQ8TCT7 592 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 HASPINQ8TF76 798 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 STYXQ8WUJ0 223 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 VPS33AQ96AX1 596 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 TKTL2Q9H0I9 626 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 FAM96AQ9H5X1 160 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 PRDM16Q9HAZ2 1276 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 DUS2Q9NX74 493 aaKnown RBP12.43□□□□□ -0.42
LDLR-205ENST00000557933 NDUFA13Q9P0J0 144 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 OAZ3Q9UMX2 235 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 PIN4Q9Y237 131 aaKnown RBP12.43□□□□□ -0.42
LDLR-205ENST00000557933 A0A0C4DFX4 3053 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 ZNF236Q9UL36 1845 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 TMEM114B3SHH9 223 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 UBFD1O14562 309 aaKnown RBP12.43□□□□□ -0.42
LDLR-205ENST00000557933 TIMM44O43615 452 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 LRIG2O94898 1065 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 MPOP05164 745 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 ATP5BP06576 529 aaKnown RBP12.43□□□□□ -0.42
LDLR-205ENST00000557933 PCNAP12004 261 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 EDNRBP24530 442 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 ADRA1BP35368 520 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 SLC12A2P55011 1212 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 KCTD2Q14681 263 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 KIAA0319Q5VV43 1072 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 METTL21CQ5VZV1 264 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 ELMSAN1Q6PJG2 1045 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 NSUN5Q96P11 429 aaKnown RBP12.43□□□□□ -0.42
LDLR-205ENST00000557933 SLC2A11Q9BYW1 496 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 OR12D3Q9UGF7 316 aa12.43□□□□□ -0.42
LDLR-205ENST00000557933 H3BNH8 94 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 DCLK1O15075 740 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 MSI1O43347 362 aaKnown RBP12.42□□□□□ -0.42
LDLR-205ENST00000557933 TSPAN3O60637 253 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 KPNA6O60684 536 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 COL6A2P12110 1019 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 ZNF182P17025 639 aaPredicted RBP12.42□□□□□ -0.42
LDLR-205ENST00000557933 EEF1B2P24534 225 aaKnown RBP12.42□□□□□ -0.42
LDLR-205ENST00000557933 ARNTP27540 789 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 HOXA11P31270 313 aaPredicted RBP12.42□□□□□ -0.42
LDLR-205ENST00000557933 GLUD2P49448 558 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 CLCN2P51788 898 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 GNA12Q03113 381 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 TNFAIP2Q03169 654 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 ITKQ08881 620 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 SLC12A1Q13621 1099 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 DPYSQ14117 519 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 ZFP1Q6P2D0 407 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 CUZD1Q86UP6 607 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 ZNF354CQ86Y25 554 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 DDIASQ8IXT1 998 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 ISOC1Q96CN7 298 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 ASB9Q96DX5 294 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 GPR22Q99680 433 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 PLEKHA5Q9HAU0 1116 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 NCKIPSDQ9NZQ3 722 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 NCF1BA6NI72 391 aaPredicted RBP12.42□□□□□ -0.42
LDLR-205ENST00000557933 NCF1CA8MVU1 366 aaPredicted RBP12.42□□□□□ -0.42
LDLR-205ENST00000557933 NCF1P14598 390 aaPredicted RBP12.42□□□□□ -0.42
LDLR-205ENST00000557933 ZNF23P17027 643 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 PRDX6P30041 224 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 MAGEA12P43365 314 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 RAB10P61026 200 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 PMS2P3Q13401 168 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 RABL3Q5HYI8 236 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 EPHX4Q8IUS5 362 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 B3GALNT2Q8NCR0 500 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 APPL2Q8NEU8 664 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 MAGEE2Q8TD90 523 aaPredicted RBP12.42□□□□□ -0.42
LDLR-205ENST00000557933 TMEM40Q8WWA1 233 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 HAUS8Q9BT25 410 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 NAT9Q9BTE0 207 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 ZNF385DQ9H6B1 395 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 POLR1BQ9H9Y6 1135 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 CASS4Q9NQ75 786 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 SLAMF8Q9P0V8 285 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 IGSF9Q9P2J2 1179 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 ZNF510Q9Y2H8 683 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 KCTD3Q9Y597 815 aa12.42□□□□□ -0.42
LDLR-205ENST00000557933 EI24O14681 340 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 INPP4BO15327 924 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 CABYRO75952 493 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 GPR158Q5T848 1215 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 GPR141Q7Z602 305 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 CARM1Q86X55 608 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 DHFR2Q86XF0 187 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 OR6P1Q8NGX9 317 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 THAP11Q96EK4 314 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 TMEM74Q96NL1 305 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 GPR78Q96P69 363 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 PLEKHG4BQ96PX9 1271 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 RHOJQ9H4E5 214 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms