RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 ITM2CQ9NQX7 267 aa3.93□□□□□ -1.78
SCFD1-216ENST00000555550 ANKRD10Q9NXR5 420 aa3.93□□□□□ -1.78
SCFD1-216ENST00000555550 SLC45A1Q9Y2W3 748 aa3.93□□□□□ -1.78
SCFD1-216ENST00000555550 PCDHGB5Q9Y5G0 923 aa3.93□□□□□ -1.78
SCFD1-216ENST00000555550 NFS1Q9Y697 457 aa3.93□□□□□ -1.78
SCFD1-216ENST00000555550 IGLV5-37A0A075B6J1 123 aa3.92□□□□□ -1.78
SCFD1-216ENST00000555550 A0A0U1RQJ8 604 aa3.92□□□□□ -1.78
SCFD1-216ENST00000555550 hDV102S1A0JD36 115 aa3.92□□□□□ -1.78
SCFD1-216ENST00000555550 ARHGAP10A1A4S6 786 aa3.92□□□□□ -1.78
SCFD1-216ENST00000555550 SH2D7A6NKC9 451 aaPredicted RBP3.92□□□□□ -1.78
SCFD1-216ENST00000555550 PER2O15055 1255 aa3.92□□□□□ -1.78
SCFD1-216ENST00000555550 VNN2O95498 520 aa3.92□□□□□ -1.78
SCFD1-216ENST00000555550 SERPINB2P05120 415 aa3.92□□□□□ -1.78
SCFD1-216ENST00000555550 FMO4P31512 558 aa3.92□□□□□ -1.78
SCFD1-216ENST00000555550 TAF6P49848 677 aa3.92□□□□□ -1.78
SCFD1-216ENST00000555550 ARL4CP56559 192 aa3.92□□□□□ -1.78
SCFD1-216ENST00000555550 YWHAZP63104 245 aaKnown RBP3.92□□□□□ -1.78
SCFD1-216ENST00000555550 TBL3Q12788 808 aaKnown RBP3.92□□□□□ -1.78
SCFD1-216ENST00000555550 SNTA1Q13424 505 aa3.92□□□□□ -1.78
SCFD1-216ENST00000555550 RBM39Q14498 530 aaKnown RBP3.92□□□□□ -1.78
SCFD1-216ENST00000555550 ARHGEF6Q15052 776 aa3.92□□□□□ -1.78
SCFD1-216ENST00000555550 ZRSR1Q15695 479 aaKnown RBP3.92□□□□□ -1.78
SCFD1-216ENST00000555550 GRAMD1BQ3KR37 738 aa3.92□□□□□ -1.78
SCFD1-216ENST00000555550 RHBDF2Q6PJF5 856 aa3.92□□□□□ -1.78
SCFD1-216ENST00000555550 MOB3CQ70IA8 216 aa3.92□□□□□ -1.78
SCFD1-216ENST00000555550 SFTPA2Q8IWL1 248 aa3.92□□□□□ -1.78
SCFD1-216ENST00000555550 AADATQ8N5Z0 425 aa3.92□□□□□ -1.78
SCFD1-216ENST00000555550 USP38Q8NB14 1042 aa3.92□□□□□ -1.78
SCFD1-216ENST00000555550 ARRDC2Q8TBH0 407 aa3.92□□□□□ -1.78
SCFD1-216ENST00000555550 TMEM170AQ8WVE7 144 aa3.92□□□□□ -1.78
SCFD1-216ENST00000555550 ZC3HAV1LQ96H79 300 aaKnown RBP3.92□□□□□ -1.78
SCFD1-216ENST00000555550 OR1F2PQ96R84 312 aa3.92□□□□□ -1.78
SCFD1-216ENST00000555550 PKP4Q99569 1192 aa3.92□□□□□ -1.78
SCFD1-216ENST00000555550 PYM1Q9BRP8 204 aaKnown RBP3.92□□□□□ -1.78
SCFD1-216ENST00000555550 MMTAG2Q9BU76 263 aaKnown RBP3.92□□□□□ -1.78
SCFD1-216ENST00000555550 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP3.92□□□□□ -1.78
SCFD1-216ENST00000555550 LMAN2LQ9H0V9 348 aa3.92□□□□□ -1.78
SCFD1-216ENST00000555550 IL25Q9H293 177 aa3.92□□□□□ -1.78
SCFD1-216ENST00000555550 EPHX3Q9H6B9 360 aa3.92□□□□□ -1.78
SCFD1-216ENST00000555550 DONSONQ9NYP3 566 aa3.92□□□□□ -1.78
SCFD1-216ENST00000555550 NDRG3Q9UGV2 375 aa3.92□□□□□ -1.78
SCFD1-216ENST00000555550 SAA2-SAA4A0A096LPE2 208 aa3.91□□□□□ -1.78
SCFD1-216ENST00000555550 C17orf113A0A1B0GUU1 675 aa3.91□□□□□ -1.78
SCFD1-216ENST00000555550 CLGNO14967 610 aa3.91□□□□□ -1.78
SCFD1-216ENST00000555550 TSPAN3O60637 253 aa3.91□□□□□ -1.78
SCFD1-216ENST00000555550 MTA2O94776 668 aa3.91□□□□□ -1.78
SCFD1-216ENST00000555550 RGS11O94810 467 aa3.91□□□□□ -1.78
SCFD1-216ENST00000555550 CNPP09543 421 aaKnown RBP3.91□□□□□ -1.78
SCFD1-216ENST00000555550 PCNAP12004 261 aa3.91□□□□□ -1.78
SCFD1-216ENST00000555550 ZNF8P17098 575 aaPredicted RBP3.91□□□□□ -1.78
SCFD1-216ENST00000555550 TTKP33981 857 aa3.91□□□□□ -1.78
SCFD1-216ENST00000555550 DHX34Q14147 1143 aaKnown RBP3.91□□□□□ -1.78
SCFD1-216ENST00000555550 CALCRLQ16602 461 aa3.91□□□□□ -1.78
SCFD1-216ENST00000555550 DSTYKQ6XUX3 929 aa3.91□□□□□ -1.78
SCFD1-216ENST00000555550 SHFQ7M4L6 423 aa3.91□□□□□ -1.78
SCFD1-216ENST00000555550 ADGRG6Q86SQ4 1221 aa3.91□□□□□ -1.78
SCFD1-216ENST00000555550 HERC6Q8IVU3 1022 aa3.91□□□□□ -1.78
SCFD1-216ENST00000555550 PGBD5Q8N414 524 aa3.91□□□□□ -1.78
SCFD1-216ENST00000555550 RFWD2Q8NHY2 731 aa3.91□□□□□ -1.78
SCFD1-216ENST00000555550 LRFN5Q96NI6 719 aa3.91□□□□□ -1.78
SCFD1-216ENST00000555550 OBSCNQ5VST9 7968 aa3.91□□□□□ -1.78
SCFD1-216ENST00000555550 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.9□□□□□ -1.79
SCFD1-216ENST00000555550 J3KR12 359 aa3.9□□□□□ -1.79
SCFD1-216ENST00000555550 EBAG9O00559 213 aa3.9□□□□□ -1.79
SCFD1-216ENST00000555550 PEX14O75381 377 aa3.9□□□□□ -1.79
SCFD1-216ENST00000555550 AFPP02771 609 aaKnown RBP3.9□□□□□ -1.79
SCFD1-216ENST00000555550 F7P08709 466 aaPredicted RBP3.9□□□□□ -1.79
SCFD1-216ENST00000555550 SLC2A4P14672 509 aa3.9□□□□□ -1.79
SCFD1-216ENST00000555550 SSTR2P30874 369 aa3.9□□□□□ -1.79
SCFD1-216ENST00000555550 PIGAP37287 484 aa3.9□□□□□ -1.79
SCFD1-216ENST00000555550 BLKP51451 505 aa3.9□□□□□ -1.79
SCFD1-216ENST00000555550 ITGADQ13349 1161 aa3.9□□□□□ -1.79
SCFD1-216ENST00000555550 FBXO47Q5MNV8 452 aa3.9□□□□□ -1.79
SCFD1-216ENST00000555550 TBC1D26Q86UD7 250 aa3.9□□□□□ -1.79
SCFD1-216ENST00000555550 NOC3LQ8WTT2 800 aaKnown RBP3.9□□□□□ -1.79
SCFD1-216ENST00000555550 TAF15Q92804 592 aaKnown RBP eCLIP3.9□□□□□ -1.79
SCFD1-216ENST00000555550 HES6Q96HZ4 224 aa3.9□□□□□ -1.79
SCFD1-216ENST00000555550 EPYCQ99645 322 aa3.9□□□□□ -1.79
SCFD1-216ENST00000555550 NUF2Q9BZD4 464 aa3.9□□□□□ -1.79
SCFD1-216ENST00000555550 TAOK3Q9H2K8 898 aa3.9□□□□□ -1.79
SCFD1-216ENST00000555550 CYSLTR2Q9NS75 346 aa3.9□□□□□ -1.79
SCFD1-216ENST00000555550 BABAM1Q9NWV8 329 aa3.9□□□□□ -1.79
SCFD1-216ENST00000555550 IL1RAPL1Q9NZN1 696 aa3.9□□□□□ -1.79
SCFD1-216ENST00000555550 SNX9Q9Y5X1 595 aa3.9□□□□□ -1.79
SCFD1-216ENST00000555550 PABPN1LA6NDY0 278 aaKnown RBP3.89□□□□□ -1.79
SCFD1-216ENST00000555550 FAM90A7PA6NKC0 464 aa3.89□□□□□ -1.79
SCFD1-216ENST00000555550 FAM90A22PA8MWA6 464 aa3.89□□□□□ -1.79
SCFD1-216ENST00000555550 FAM90A12PA8MX19 464 aa3.89□□□□□ -1.79
SCFD1-216ENST00000555550 FAM90A23PA8MXZ1 464 aa3.89□□□□□ -1.79
SCFD1-216ENST00000555550 BMPR1BO00238 502 aa3.89□□□□□ -1.79
SCFD1-216ENST00000555550 SRD5A1P18405 259 aa3.89□□□□□ -1.79
SCFD1-216ENST00000555550 ESCO2Q56NI9 601 aa3.89□□□□□ -1.79
SCFD1-216ENST00000555550 CCDC129Q6ZRS4 1044 aa3.89□□□□□ -1.79
SCFD1-216ENST00000555550 FAM160B2Q86V87 743 aa3.89□□□□□ -1.79
SCFD1-216ENST00000555550 KIAA2013Q8IYS2 634 aa3.89□□□□□ -1.79
SCFD1-216ENST00000555550 NKAPQ8N5F7 415 aaKnown RBP3.89□□□□□ -1.79
SCFD1-216ENST00000555550 RFLNBQ8N5W9 214 aa3.89□□□□□ -1.79
SCFD1-216ENST00000555550 PARP16Q8N5Y8 322 aa3.89□□□□□ -1.79
SCFD1-216ENST00000555550 GJC3Q8NFK1 279 aa3.89□□□□□ -1.79
SCFD1-216ENST00000555550 NEK9Q8TD19 979 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms