RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 OXR1Q8N573 874 aa10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 OR13H1Q8NG92 308 aa10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 PCDH19Q8TAB3 1148 aa10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 FAF2Q96CS3 445 aa10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 ECHDC3Q96DC8 303 aa10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 ZNF641Q96N77 438 aaPredicted RBP10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 TUBGCP5Q96RT8 1024 aa10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 CDC6Q99741 560 aa10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 CAAP1Q9H8G2 361 aa10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 KLHL11Q9NVR0 708 aa10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 SEPT3Q9UH03 358 aa10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 LCMT1Q9UIC8 334 aa10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 GCN1Q92616 2671 aaKnown RBP10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 FLNBO75369 2602 aaKnown RBP10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 TTC24A2A3L6 582 aaPredicted RBP10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 A6NNZ2 444 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 NEMP1O14524 444 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 TRAFD1O14545 582 aaPredicted RBP10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 RIOK3O14730 519 aaKnown RBP10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 HYAL3O43820 417 aaPredicted RBP10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 MMP20O60882 483 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 TRIM16O95361 564 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 ITGAVP06756 1048 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 KRT7P08729 469 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 ATXN1LP0C7T5 689 aaKnown RBP10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 GJC1P36383 396 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 ARHGAP25P42331 645 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 SUOXP51687 545 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 ZNF75DP51815 510 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 PFN3P60673 137 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 SGCGQ13326 291 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 MESDQ14696 234 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 PAFAH1B3Q15102 231 aaKnown RBP10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 PDK2Q15119 407 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 ANKRD20A8PQ5CZ79 823 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 TPRG1LQ5T0D9 272 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 NCBP2-AS2Q69YL0 99 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 KYAT3Q6YP21 454 aaKnown RBP10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 KDM7AQ6ZMT4 941 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 CHCHD4Q8N4Q1 142 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 PQLC3Q8N755 202 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 PNPLA1Q8N8W4 532 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 KCTD6Q8NC69 237 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 DENND6BQ8NEG7 585 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 NBEAQ8NFP9 2946 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 FAM174AQ8TBP5 190 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 ADAMTS14Q8WXS8 1223 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 RAPGEF5Q92565 580 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 CENPTQ96BT3 561 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 ZNF670Q9BS34 389 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 CINPQ9BW66 212 aaPredicted RBP10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 SCNM1Q9BWG6 230 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 TMEM121BQ9BXQ6 578 aaPredicted RBP10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 PCDH12Q9NPG4 1184 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 NYNRINQ9P2P1 1898 aaKnown RBP10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 INTUQ9ULD6 942 aa10.37□□□□□ -0.75
CCDC88C-206ENST00000553437 PCNX2A6NKB5 2137 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 FAM221BA6H8Z2 402 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 C3orf70A6NLC5 250 aaPredicted RBP10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 TMEM110-MUSTN1A8MSY1 372 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 HTRA2O43464 458 aaPredicted RBP10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 TNFSF14O43557 240 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 MFSD11O43934 449 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 LCA5LO95447 670 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 PRKCGP05129 697 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 SERPINA4P29622 427 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 SERPINB6P35237 376 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 HSPA9P38646 679 aaKnown RBP10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 SCNN1BP51168 640 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 RENBPP51606 427 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 AP1S1P61966 158 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 BCL2L1Q07817 233 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 GALNT2Q10471 571 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 FZD2Q14332 565 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 BRAT1Q6PJG6 821 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 DCP2Q8IU60 420 aaKnown RBP10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 LRRC49Q8IUZ0 686 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 RHOT2Q8IXI1 618 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 SLC25A45Q8N413 288 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 ATPAF2Q8N5M1 289 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 TEX26Q8N6G2 289 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 TP53I13Q8NBR0 393 aaPredicted RBP10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 CXorf40AQ8TE69 158 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 RFFLQ8WZ73 363 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 SPOCK2Q92563 424 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 MRFAP1L1Q96HT8 127 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 MGME1Q9BQP7 344 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 WRAP53Q9BUR4 548 aaKnown RBP10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 CALN1Q9BXU9 219 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 ATP13A3Q9H7F0 1226 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 MBNL1Q9NR56 388 aaKnown RBP10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 KLK13Q9UKR3 277 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 NEUROG3Q9Y4Z2 214 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 PLXNA2O75051 1894 aa10.36□□□□□ -0.75
CCDC88C-206ENST00000553437 SPTY2D1-AS1A0A0U1RR47 76 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 FPGTO14772 594 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 SDC3O75056 442 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 TM7SF2O76062 418 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 GIMD1P0DJR0 217 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 FECHP22830 423 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms